mRNA_1467 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161674
Unique NamemRNA_1467
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|161674 vs. uniprot
Match: A0A835YZ59_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ59_9STRA)

HSP 1 Score: 238 bits (607), Expect = 2.290e-79
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 1 
Query:    1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLDIEVPFSTFGRIVNKPGLSVDNEIDVYSPIIEHSGNVGVILYNHGDNDFIVTTGDCVAQLVVEQAVIVQVREGSCVYS 372
            MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDL++EVPFSTFGRIVNKPGLSVDNEIDVYSPIIEHSGNVGV+LYNHGDNDFIV TG CVAQLVVEQAVIVQVREGSCVYS
Sbjct:    1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLEMEVPFSTFGRIVNKPGLSVDNEIDVYSPIIEHSGNVGVVLYNHGDNDFIVATGGCVAQLVVEQAVIVQVREGSCVYS 124
[Close]
BLAST of jgi.p|Trimin1|161674 vs. uniprot
Match: A0A835ZE92_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE92_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.140e-54
Identity = 86/123 (69.92%), Postives = 103/123 (83.74%), Query Frame = 1 
Query:    1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLDIEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVILYNHGDNDFIVTTGDCVAQLVVEQAVIVQVREGSC 363
            M+ VRRLS NA+ PTKK   SVCLQLYSAH+VTVP+H KALVQTDL+IE+P ST+GRIVNKPGLSVDNE+DVYSPIIE  +S NVG+++YNHG +DF V  GDC+AQL+V QAVI  ++E  C
Sbjct:    1 MLTVRRLSVNAQPPTKKTPTSVCLQLYSAHNVTVPAHDKALVQTDLEIELPVSTYGRIVNKPGLSVDNEMDVYSPIIEAQNSSNVGIVIYNHGSSDFQVVRGDCIAQLIVHQAVIAHIQEQGC 123
[Close]
BLAST of jgi.p|Trimin1|161674 vs. uniprot
Match: A0A835ZCC1_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC1_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.260e-38
Identity = 65/126 (51.59%), Postives = 93/126 (73.81%), Query Frame = 1 
Query:    1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLDIEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVILYNHGDNDFIVTTGDCVAQLVVEQAVIVQVREGSCVYS 372
            M+ V+RLS NA LPT+ A ++V   LYSAH   +P+H  ALV+TDL ++VP S +GRI NK  L + N+++VY+ I++  H+GNVGV+L+NH D D  V  GDC+AQL++EQ VI Q++EG+ VY+
Sbjct:    1 MLNVQRLSENATLPTR-AHNAVGFDLYSAHSAVIPAHNNALVETDLSMQVPESAYGRITNKRRLGLKNKLEVYAGIVDGTHTGNVGVVLFNHADEDVTVNKGDCIAQLILEQVVIAQIKEGNNVYA 125
[Close]
BLAST of jgi.p|Trimin1|161674 vs. uniprot
Match: UPI001F0DC996 (probable deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F0DC996)

HSP 1 Score: 108 bits (271), Expect = 2.100e-27
Identity = 49/120 (40.83%), Postives = 86/120 (71.67%), Query Frame = 1 
Query:    1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLDIEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVILYNHGDNDFIVTTGDCVAQLVVEQAVIVQVRE 354
            ++K++RLS++A+LPT+ +  +    LY+AHD  +P+ GK +++TD+ I++P   +GR+  + GL++ N ID+ + +I+  + GNVGVI++NHGD  F VT GD +AQL++E+ +  +V E
Sbjct:   46 VLKIKRLSADARLPTRGSKLAAGYDLYAAHDAIIPARGKIMIKTDISIQIPSGYYGRVAPRSGLALKNSIDIGAGVIDEDYRGNVGVIIFNHGDQAFTVTCGDRIAQLLLEKIITPEVIE 165
[Close]
BLAST of jgi.p|Trimin1|161674 vs. uniprot
Match: A4S9G9_OSTLU (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S9G9_OSTLU)

HSP 1 Score: 104 bits (260), Expect = 3.600e-26
Identity = 54/119 (45.38%), Postives = 79/119 (66.39%), Query Frame = 1 
Query:    4 IKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLDIEVPFSTFGRIVNKPGLSVDNEIDVYSPIIEHS--GNVGVILYNHGDNDFIVTTGDCVAQLVVEQAVIVQVRE 354
            ++V+RLS +A +PT+ +  +    L SAHD  VP+ GK LV+TDL I +P  T+ R+  + GL+    IDV + ++++   GNVGVIL+NHGD DF V  GD VAQL++EQ +  +V E
Sbjct:    6 LRVKRLSDDATMPTRGSEGAAGYDLASAHDCVVPARGKELVKTDLSIAIPLGTYARVAPRSGLAWKKFIDVGAGVVDYDYRGNVGVILFNHGDEDFEVKKGDRVAQLILEQILTPEVVE 124
[Close]
BLAST of jgi.p|Trimin1|161674 vs. uniprot
Match: A0A2T7A060_TUBBO (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Tuber borchii TaxID=42251 RepID=A0A2T7A060_TUBBO)

HSP 1 Score: 106 bits (264), Expect = 7.260e-26
Identity = 53/119 (44.54%), Postives = 82/119 (68.91%), Query Frame = 1 
Query:    4 IKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLDIEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVILYNHGDNDFIVTTGDCVAQLVVEQAVIVQVRE 354
            +++RRLS+ A++P + ++ +    LYSAHD T+  HGKALV TD+ + +P  T+GRI  + GL+  N IDV + +I+  + G V V+L+NHGD DF+V  GD +AQL++E+ V  +V E
Sbjct:   99 LRIRRLSTKARIPKRGSALAAGYDLYSAHDTTIIRHGKALVDTDIQMMIPVGTYGRIAPRSGLASKNFIDVGAGVIDADYRGQVKVLLFNHGDADFVVKEGDRIAQLILERIVTPEVVE 217
[Close]
BLAST of jgi.p|Trimin1|161674 vs. uniprot
Match: UPI001C2049DD (deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Aricia agestis TaxID=91739 RepID=UPI001C2049DD)

HSP 1 Score: 103 bits (257), Expect = 8.220e-26
Identity = 51/122 (41.80%), Postives = 81/122 (66.39%), Query Frame = 1 
Query:    1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLDIEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVILYNHGDNDFIVTTGDCVAQLVVEQAVIVQVREGS 360
            ++K  RL++NA  P+K +  +    L SA+D  VP+ GK L++TD+ IE+P   +GR+  + GL+V N IDV + +I+  + GNVGV+L+NH DNDF+V  GD +AQL+ E+    ++ E +
Sbjct:    8 VLKFTRLTTNAFAPSKGSEKAAGFDLKSAYDYVVPARGKELIKTDIQIELPSGCYGRVAPRSGLAVKNFIDVGAGVIDEDYRGNVGVVLFNHSDNDFVVNKGDRIAQLICEKIFYPEIVEAN 129
[Close]
BLAST of jgi.p|Trimin1|161674 vs. uniprot
Match: A0A2R5GQR2_9STRA (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQR2_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.190e-25
Identity = 51/120 (42.50%), Postives = 80/120 (66.67%), Query Frame = 1 
Query:    1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLDIEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVILYNHGDNDFIVTTGDCVAQLVVEQAVIVQVRE 354
            M+ V +LS  A +PT+ ++++  L LY+AHD  +P+ GK LV+TDL ++VP  T+GR+  + GL+    +DV + +I+  + GNVGV+L+NH   D  V  GD +AQLV+E+  +  VRE
Sbjct:   12 MVLVSKLSEKATVPTRGSAEAAGLDLYAAHDAVIPAAGKGLVKTDLAMQVPLGTYGRVAPRSGLAWKKHVDVGAGVIDRDYRGNVGVVLFNHAQEDLEVKVGDRIAQLVLEKVSMAPVRE 131
[Close]
BLAST of jgi.p|Trimin1|161674 vs. uniprot
Match: A0A1Z3GCM5_9POXV (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Seal parapoxvirus TaxID=187984 RepID=A0A1Z3GCM5_9POXV)

HSP 1 Score: 102 bits (253), Expect = 4.330e-25
Identity = 53/120 (44.17%), Postives = 81/120 (67.50%), Query Frame = 1 
Query:    1 MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLDIEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVILYNHGDNDFIVTTGDCVAQLVVEQAVIVQVRE 354
            +++V RLS++A LPT+ ++ +    LYSAHD TVP+ G+A+V TD+ + VP   +GR+  + GL+V   +DV + +I+  + GNVGV+L+N G  DF V  GD VAQL+ E+  +  VRE
Sbjct:    9 VLRVVRLSASATLPTRGSALAAGCDLYSAHDCTVPARGRAVVFTDIQVGVPHGCYGRVAPRSGLAVSRFVDVGAGVIDADYRGNVGVLLFNFGAEDFQVRRGDRVAQLICERVALPSVRE 128
[Close]
BLAST of jgi.p|Trimin1|161674 vs. uniprot
Match: A0A317SWK9_9PEZI (Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Tuber magnatum TaxID=42249 RepID=A0A317SWK9_9PEZI)

HSP 1 Score: 103 bits (258), Expect = 4.550e-25
Identity = 53/119 (44.54%), Postives = 83/119 (69.75%), Query Frame = 1 
Query:    4 IKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLDIEVPFSTFGRIVNKPGLSVDNEIDVYSPIIE--HSGNVGVILYNHGDNDFIVTTGDCVAQLVVEQAVIVQVRE 354
            +++R+ SS A++PT+ ++ +    LYSA D T+P+ GKALV TDL++ VP  T+GRI  + GL+  N IDV + +I+  + G+V V+L+NH D +F+V  GD VAQL++E+ V  +V E
Sbjct:   89 LRIRKTSSKARIPTRGSALAAGYDLYSARDTTIPTRGKALVDTDLEMVVPVETYGRIAPRSGLAWKNFIDVGAGVIDADYRGHVRVLLFNHSDENFVVKEGDRVAQLILERIVTPEVVE 207
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161674 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZ59_9STRA2.290e-7995.97Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A835ZE92_9STRA1.140e-5469.92Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A835ZCC1_9STRA2.260e-3851.59Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
UPI001F0DC9962.100e-2740.83probable deoxyuridine 5'-triphosphate nucleotidohy... [more]
A4S9G9_OSTLU3.600e-2645.38Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A2T7A060_TUBBO7.260e-2644.54Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
UPI001C2049DD8.220e-2641.80deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A2R5GQR2_9STRA3.190e-2542.50Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A1Z3GCM5_9POXV4.330e-2544.17Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]
A0A317SWK9_9PEZI4.550e-2544.54Deoxyuridine 5'-triphosphate nucleotidohydrolase n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1127306..1127680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161674|e_gw1.18.77.1
BRITEko00000,ko00001,ko00002,ko01000,ko03400
KEGG rclassRC00002
KEGG ReactionR02100,R11896
KEGG ModuleM00053
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG koko:K01520
EC3.6.1.23
DescriptiondUTPase
COG categoryF
Max annot lvl3041|Chlorophyta
EggNOG OGsCOG0756@1|root,KOG3370@2759|Eukaryota,37TVP@33090|Viridiplantae,34KN2@3041|Chlorophyta
Evalue5.91e-27
Seed ortholog242159.ABP00357
Hectar predicted targeting categorymitochondrion
TranscriptId161996
TrackFilteredModels1
ProteinId161674
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161674gene_1467Tribonema minus UTEX_B_3156 geneContig_18 1127306..1127680 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1467_1exon_1467_1Tribonema minus UTEX_B_3156 exonContig_18 1127306..1127680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1467CDS_1467Tribonema minus UTEX_B_3156 CDSContig_18 1127306..1127680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161674Trimin1|161674|e_gw1.18.77.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1127306..1127680 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1467 ID=mRNA_1467|Name=jgi.p|Trimin1|161674|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_18:1127306..1127680- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATCAAAGTACGCAGACTTTCCAGCAATGCAAAGCTACCGACAAAGAA
AGCTAGCGATTCAGTTTGTTTACAGTTGTATTCTGCACATGATGTAACTG
TGCCAAGTCACGGCAAGGCACTGGTGCAAACAGACCTGGACATCGAGGTT
CCATTCAGCACATTTGGCCGCATAGTAAACAAGCCAGGTCTCAGTGTAGA
CAATGAGATTGATGTTTACTCCCCTATTATTGAGCACAGTGGAAACGTTG
GGGTCATACTGTACAACCACGGCGACAATGACTTCATCGTGACAACGGGA
GACTGCGTTGCTCAGCTCGTCGTAGAACAGGCAGTAATAGTCCAAGTGCG
TGAAGGATCGTGTGTGTATAGTTAA
back to top

protein sequence of jgi.p|Trimin1|161674

>Trimin1|161674|e_gw1.18.77.1 ID=Trimin1|161674|e_gw1.18.77.1|Name=jgi.p|Trimin1|161674|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=125bp
MIKVRRLSSNAKLPTKKASDSVCLQLYSAHDVTVPSHGKALVQTDLDIEV
PFSTFGRIVNKPGLSVDNEIDVYSPIIEHSGNVGVILYNHGDNDFIVTTG
DCVAQLVVEQAVIVQVREGSCVYS*
back to top

mRNA from alignment at Contig_18:1127306..1127680-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1467 ID=mRNA_1467|Name=jgi.p|Trimin1|161674|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=375bp|location=Sequence derived from alignment at Contig_18:1127306..1127680- (Tribonema minus UTEX_B_3156 )
ATGATCAAAGTACGCAGACTTTCCAGCAATGCAAAGCTACCGACAAAGAA
AGCTAGCGATTCAGTTTGTTTACAGTTGTATTCTGCACATGATGTAACTG
TGCCAAGTCACGGCAAGGCACTGGTGCAAACAGACCTGGACATCGAGGTT
CCATTCAGCACATTTGGCCGCATAGTAAACAAGCCAGGTCTCAGTGTAGA
CAATGAGATTGATGTTTACTCCCCTATTATTGAGCACAGTGGAAACGTTG
GGGTCATACTGTACAACCACGGCGACAATGACTTCATCGTGACAACGGGA
GACTGCGTTGCTCAGCTCGTCGTAGAACAGGCAGTAATAGTCCAAGTGCG
TGAAGGATCGTGTGTGTATAGTTAA
back to top

Coding sequence (CDS) from alignment at Contig_18:1127306..1127680-

>mRNA_1467 ID=mRNA_1467|Name=jgi.p|Trimin1|161674|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=375bp|location=Sequence derived from alignment at Contig_18:1127306..1127680- (Tribonema minus UTEX_B_3156 )
ATGATCAAAGTACGCAGACTTTCCAGCAATGCAAAGCTACCGACAAAGAA
AGCTAGCGATTCAGTTTGTTTACAGTTGTATTCTGCACATGATGTAACTG
TGCCAAGTCACGGCAAGGCACTGGTGCAAACAGACCTGGACATCGAGGTT
CCATTCAGCACATTTGGCCGCATAGTAAACAAGCCAGGTCTCAGTGTAGA
CAATGAGATTGATGTTTACTCCCCTATTATTGAGCACAGTGGAAACGTTG
GGGTCATACTGTACAACCACGGCGACAATGACTTCATCGTGACAACGGGA
GACTGCGTTGCTCAGCTCGTCGTAGAACAGGCAGTAATAGTCCAAGTGCG
TGAAGGATCGTGTGTGTATAGTTAA
back to top