mRNA_1494 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161670
Unique NamemRNA_1494
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|161670 vs. uniprot
Match: A0A836CFM8_9STRA (Kinase-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFM8_9STRA)

HSP 1 Score: 664 bits (1712), Expect = 7.370e-241
Identity = 326/334 (97.60%), Postives = 332/334 (99.40%), Query Frame = 1
Query:    1 MYQRSVVREARHKSTRTSVLYRCESQGFVSVVPVVRSSKVTSVNGVIVAVNEHVISGRLGKGATAQVFECHSPQFGKAALKILEKSTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMVSGLECQRVTSDIVSGLTHMHSKGFLHCDVKPANIVRTAEGISKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPFNSHLRGGTARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDLTKFNHFCKTGLQKSPARRSTLGQWRQHEWLYYAVLKSVR 1002
            MYQRSVVREARHKSTRTSVLYRCESQGFVSVVPVVRSSKVTSVNGVIV VNEHVISGRLG+GATAQVFECHSPQFGKAALKILEK+TGCESLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMVSGLECQRVTSDIVSGL HMHSKGFLHCDVKPANIVRTAEG+SKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPFNSHLRGG+ARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDD+TKFNHFCKTGLQKSPARRSTLGQWRQHEWLYYAVLKSV+
Sbjct:    1 MYQRSVVREARHKSTRTSVLYRCESQGFVSVVPVVRSSKVTSVNGVIVGVNEHVISGRLGRGATAQVFECHSPQFGKAALKILEKTTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMVSGLECQRVTSDIVSGLMHMHSKGFLHCDVKPANIVRTAEGVSKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPFNSHLRGGSARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDVTKFNHFCKTGLQKSPARRSTLGQWRQHEWLYYAVLKSVK 334          
BLAST of jgi.p|Trimin1|161670 vs. uniprot
Match: A0A835ZCT2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT2_9STRA)

HSP 1 Score: 431 bits (1109), Expect = 8.870e-149
Identity = 204/287 (71.08%), Postives = 241/287 (83.97%), Query Frame = 1
Query:  145 AVNEHVISGRLGKGATAQVFECHSPQFGKAALKILEKSTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMVSGLECQRVTSDIVSGLTHMHSKGFLHCDVKPANIVRTAEGISKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPFNSHLRGGTARR--VREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDLTKFNHFCKTGLQKSPARRSTLGQWRQHEWLYYAVLKSV 999
            +VN++V+SGRLG G TAQV+ECHSPQ+GKAALK++EKSTG ESLHRE+MALQALK+HSNIISL++IIDD  SDIT LV EMAERGSLVGVM+SG+ECQR+  +IV GL HMHSKGF+H DVKPANI+R A G SKLADFGCCVRM EGG  A++++FMGTPAFMAPE FKDG+VTPAVDVWS ASTLHYVVYGTLPF++ +RGGT  +    ++  IEDSIM+ EP LG N R R++ N+E  WHSDD+TKFNHFCK GL K+P  R TLGQWRQHEWLY+  +  V
Sbjct:    2 SVNDYVVSGRLGAGVTAQVYECHSPQYGKAALKVIEKSTGRESLHRELMALQALKDHSNIISLFSIIDDQKSDITWLVEEMAERGSLVGVMMSGMECQRMGYEIVCGLAHMHSKGFIHRDVKPANILRAANGTSKLADFGCCVRMEEGGDTARNKHFMGTPAFMAPETFKDGVVTPAVDVWSFASTLHYVVYGTLPFDTRVRGGTKGKNAAVDDAAIEDSIMFYEPYLGTNARPRHMKNMEKRWHSDDVTKFNHFCKMGLHKNPTHRCTLGQWRQHEWLYFYYIPLV 288          
BLAST of jgi.p|Trimin1|161670 vs. uniprot
Match: A0A835Z3R1_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3R1_9STRA)

HSP 1 Score: 278 bits (711), Expect = 1.360e-89
Identity = 141/284 (49.65%), Postives = 194/284 (68.31%), Query Frame = 1
Query:  133 GVIVAVNEHVISGRLGKGATAQVFECHSPQFGKAALKILEKSTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGV-MVSGLECQRVTSDIVSGLTHMHSKGFLHCDVKPANIVRTAEGISKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPFNSHLRGGTARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDLTKFNHFCKTGLQKSPARRSTLGQWRQHEWLYY 981
            G +  VNE  I+G +G G+TA+VFEC S   GK A+K++ KS   ESLHREIMALQ LK H NI++L  +I+DP  D+  LV E+A +GSLVGV M + L+CQ V SD +S LT+MHS+G++H DVKPANI+  ++G +KL DFGC +R+++  + A+   FMGTPAFMAPE+F  GI+T A+DVWSL  T+H+VVYG+LPF +           E   +  S+MY  P++G  +  R L  +  NW +DD+++F HFCK G +K P +R TL +  QH+WL Y
Sbjct:    2 GSLKEVNEFSITGHMGTGSTARVFECSSDVHGKVAMKMVYKSKAKESLHREIMALQDLK-HKNIVNLLVVINDPRLDVAFLVEELATKGSLVGVVMKTSLQCQHVASDTMSALTYMHSRGYVHRDVKPANILIMSDGKAKLTDFGCAIRVSDCLTRAK---FMGTPAFMAPELFSTGIITTAIDVWSLVGTMHHVVYGSLPFGA-----------EGLVLSQSVMYSSPAMGTTMSPRCLKMMNENWTNDDISRFKHFCKEGFRKDPDKRITLEKLAQHDWLTY 270          
BLAST of jgi.p|Trimin1|161670 vs. uniprot
Match: A0A836CE44_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE44_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.300e-32
Identity = 98/282 (34.75%), Postives = 132/282 (46.81%), Query Frame = 1
Query:  172 RLGKGATAQVFECHSPQFGKAALKILEKSTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVV-EMAERGSLVGVMVSGLECQRVTSDIVSGLTHMHSKGFLHCDVKPANIVRTAEGISKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKD--GIVTPAVDVWSLASTLHYVVYGTLPFNSHLRGGTARRVREEGDIEDSIMY-------CEPSLGNNVRSRYLTNIESNWHSDDLTKFNHFCKTGLQKSPARRSTLGQWRQHEWLYYAV 987
            R+G G T  V+          ALK++          RE+ ALQAL+ H NI+ +             L+V E+AE GSL GV++   E     +++ S L  +H +G+ H DVKP NI+R A+G  KL DFGCC R  E  +E + R   GTPAFM PE F+      T AVD W LA+T   +V G  PF+   RG           + DSI+Y       C+   GN+               DD     +F   GL K+P  R ++ Q  QH WL  A 
Sbjct:   58 RIGGGGTGSVYAARDEYGADVALKVVANDAAAYG--REVRALQALQ-HRNIVQMVDTQGGQEGKGPYLIVMELAEWGSLAGVVLRSAEAAAYVAEVASALQFIHERGYAHGDVKPGNILRFADGTVKLCDFGCCER-PEAAAETRGRP-RGTPAFMPPEAFQGTGSGWTAAVDSWGLAATSFCLVRGRPPFSVAGRG-----------LFDSILYGRANLTACQGERGNDA--------------DDEADLANFVAWGLTKAPRGRPSMEQVLQHPWLTKAA 309          
BLAST of jgi.p|Trimin1|161670 vs. uniprot
Match: A0A835YXT3_9STRA (Kinase-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT3_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.750e-27
Identity = 84/271 (31.00%), Postives = 134/271 (49.45%), Query Frame = 1
Query:  172 RLGKGATAQVFECHSPQFGKAALKILEKSTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDIT---CLVVEMAERGSLVGVMVSGLECQRVTSDIVSGLTHMHSKGFLHCDVKPANIVRTAEGISKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPFNSHLRGGTARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDLTKFNHFCKTGLQKSPARRSTLGQWRQHEWL 975
            RLG GATA V+E  + +    ALK++ +     +  RE+  L+ ++ H  I+ L+   ++ +   T    +V+E+   GSL G+++ G E  +   D+   L ++H KG++H D+KPAN++R   G  K+ DFGCC ++A    +   R   GTPAFM+PE ++    T A DVWSLA+T+  VV G  PF                ++ + IMY  P    + RS  +   E      + +   H    GL K    R ++     H W+
Sbjct:   22 RLGSGATATVYEACTEKNEVVALKVVMRDRN--TYMRELRVLKEMR-HDRIVKLFRSEENESYRKTGPFLIVMELEPWGSLSGLVLWGSEAAQCMRDVAIALQYIHRKGYIHGDIKPANLLRDGCGRIKVCDFGCCKKIATD-DDTVFRRPQGTPAFMSPEAYRGHGGTTACDVWSLAATIFCVVRGHPPFMGQ-------------NLVEKIMYGAPD---SHRSAPVVCCE------EESNLAHLVNWGLSKPARDRPSVDDVLHHPWM 266          
BLAST of jgi.p|Trimin1|161670 vs. uniprot
Match: F0WLC1_9STRA (cGMP-dependent protein kinase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLC1_9STRA)

HSP 1 Score: 119 bits (297), Expect = 8.420e-26
Identity = 100/293 (34.13%), Postives = 145/293 (49.49%), Query Frame = 1
Query:  148 VNEHVISGRLGKGATAQVFECHSPQFGKA-ALKILEKS-----TGCE-----SLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMVS-GLECQ---RVTSDIVSGLTHMHSKGFLHCDVKPANIVRTAEGISKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVT--PAVDVWSLASTLHYVVYGTLPFNSHLRGGTARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDLTKFNHFCKTGLQKSPARRSTLGQWRQHEWL 975
            VNE+VI G LGKG   +V  C + Q  K  A+KIL KS      G E     +L REI  ++ L+ H N++ L  +IDDP+S    LV E  +   +  + +  GL  Q   R   D++ GL ++H    +H D+KP NI+ +AEG++K+ADFG   RM    SE       GTPAFMAPEMF        P+VD+WSL +TL+ +V G  P+ +      + +V+++         C PS        +L N+                +  L K P  R +L    +HEW+
Sbjct:  587 VNEYVIQGDLGKGTYGRVKLCQNEQDNKLYAVKILHKSFVSRMAGKEDLLRDALRREIAIMKKLQ-HRNVVRLVEVIDDPSSAKIYLVQEYVKHNLMDQIAIMRGLTEQVARRYLRDLLLGLHYLHLHRVIHRDIKPGNILVSAEGVAKIADFGTA-RMIMNESETLSGA-KGTPAFMAPEMFDIDATYRGPSVDIWSLGATLYMMVIGHPPWLADNEIVLSEKVQKDE-------LCFPSEAETSVDPHLKNL---------------LQRMLTKDPKLRISLPGCFKHEWV 854          
BLAST of jgi.p|Trimin1|161670 vs. uniprot
Match: A0A523VB14_9CHLR (Non-specific serine/threonine protein kinase n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A523VB14_9CHLR)

HSP 1 Score: 107 bits (267), Expect = 8.120e-23
Identity = 68/202 (33.66%), Postives = 105/202 (51.98%), Query Frame = 1
Query:  154 EHVISGRLGKGATAQVFECHSPQFGK-AALKILEKSTGCESLHREIMALQALK----NHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMVSGLECQ---RVTSDIVSGLTHMHSKGFLHCDVKPANIVRTAEGISKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPF 735
            E+ I   + +GATA V++ + P+  +  A+K+L      E   RE  A +A      +H NI+ +Y    D   D+  +VV+  + GSL  +M   +      ++   + S L+H HS+G +H DVKPANI+   E    LADFG    + E  +  Q    MGTPA++APE      V    D++SLA+TL  ++ G +PF
Sbjct:   12 EYRIVEHIARGATANVYKAYQPKLNRNVAIKVLSPLYAKEEDFRERFAREAKAIAQLDHPNIVPVYDF--DRQGDLVYIVVQYVDTGSLADLMGERMPLDLAVKILDQVASALSHAHSRGIIHRDVKPANILLGQEDWVLLADFGLAKMLEESATITQPGSGMGTPAYIAPEQATGESVDARSDIYSLAATLFQMITGRVPF 211          
BLAST of jgi.p|Trimin1|161670 vs. uniprot
Match: A0A197JSI3_9FUNG (Pkinase-domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JSI3_9FUNG)

HSP 1 Score: 109 bits (273), Expect = 8.280e-23
Identity = 77/252 (30.56%), Postives = 123/252 (48.81%), Query Frame = 1
Query:  250 EKSTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMV--------SGLECQRVTSDIVSGLTHMHSKGFLHCDVKPANIVRTAEGISKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKD-GIVT-PAVDVWSLASTLHYVVYGTLPFNSHLRGGTARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDLTKFNHFCKTGLQKSPARRSTLGQWRQHEWL 975
            E+ +  + +  EI  L+ L NH NI+ LY ++D    D   +V E+ E G+L  V V        +  EC+ V   +V G+ ++H    +H D+KP N++R+A+G  K+ DFG      + G +   +   G+PAFMAPE+ +  G V+    D+WS+  TL  + YG LPF S +     + + E+          EP LG+    R+ T I         T+        L+K P++R T+ + R   WL
Sbjct:  282 EEKSPLDLIRGEIAILKKL-NHVNIVKLYEVLDVAAEDSMYMVFELCELGALTEVSVGDKPGKIFTDSECRDVFQQMVLGIEYLHEHDIIHRDIKPDNLLRSADGTLKIVDFGVSEMFTKKGDDMIKKS-AGSPAFMAPELCRSHGEVSGKPTDLWSMGVTLFCIRYGRLPFKSGMSLELQKMINED----------EPDLGDEQDPRFRTTI---------TRL-------LEKDPSKRITIDELRNDPWL 505          
BLAST of jgi.p|Trimin1|161670 vs. uniprot
Match: A0A232LZ32_9EURO (Protein kinase domain-containing protein n=1 Tax=Elaphomyces granulatus TaxID=519963 RepID=A0A232LZ32_9EURO)

HSP 1 Score: 109 bits (273), Expect = 9.060e-23
Identity = 72/244 (29.51%), Postives = 122/244 (50.00%), Query Frame = 1
Query:  274 LHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMVSGL-------ECQRVTSDIVSGLTHMHSKGFLHCDVKPANIVRTAEGISKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEM--FKDGIVT-PAVDVWSLASTLHYVVYGTLPFNSHLRGGTARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDLTKFNHFCKTGLQKSPARRSTLGQWRQHEWL 975
            L +E +A+    NHSN++SL+ ++DDP  D   +V+EM ++G ++ V +          +C+    D++ G+ ++H++G +H D+KP N + T E + K+ DFG     A+  S+       G+PAF+ PE+   K G V+  A D+WS+  TL+ + YG +PF            +   ++ +SI   E +LG                 +D     H     LQK PA+R T+ + R H W+
Sbjct:  163 LIKEEIAIMKKLNHSNLVSLFEVLDDPNEDSLYMVMEMCQKGVIMKVGLGDRADPYDDDQCRCWFRDLILGIEYLHAQGIVHRDIKPDNCLLTNEDVLKVVDFGVSQMFAKD-SDMYTAKSAGSPAFLPPELCVVKHGDVSGKAADIWSMGVTLYCLRYGRIPFEK----------QSIFELYESIKNDEVNLGEET-------------DEDFKDLLHRI---LQKDPAKRITMRELRDHPWV 379          
BLAST of jgi.p|Trimin1|161670 vs. uniprot
Match: A0A2U1KT37_ARTAN (Phosphoenolpyruvate carboxylase-related kinase 2 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1KT37_ARTAN)

HSP 1 Score: 108 bits (270), Expect = 1.020e-22
Identity = 83/295 (28.14%), Postives = 136/295 (46.10%), Query Frame = 1
Query:  148 VNEHVISGRLGKGATAQVFECHSPQFG-KAALKILEKSTGCESLHREIMALQALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMV-----SGLECQRVTSDIVSGLTHMHSKGFLHCDVKPANIVRTAEGISKLADFGCCVRMAEGGSEAQHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPFNSHLRGGTARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDLTKFNHFCKTGLQKSPAR----RSTLGQWRQHEWLYYAVLKSVR 1002
            V +++    +GKG    V+ C     G + A K L K  G E++HRE+  +Q L  H  +++L  + ++P S    LV+E+   G L+  M      S      +  ++++ + + H  G +H DVKP NI+ TA G  KLADFG  VR+  G S A      G+PA++APE+   G  +  VDVWS    LH ++ G LPF              +GD  + +               + N+E N+H+      +   +  L++   R    R T  +   H W+ +   +++R
Sbjct:  107 VEDYIKGDSIGKGKFGSVWLCRCRASGVEFACKTLVK--GEETVHREVEIMQHLSGHPGVVTLKAVYEEPES--FHLVMELCSGGRLIDQMTKEGRYSEQRAANIFKELMTVIKYCHDMGVVHRDVKPENILLTASGKIKLADFGLAVRITNGQSLAG---LAGSPAYVAPEVIT-GSYSEKVDVWSAGILLHALLVGVLPF--------------QGDSLEDVFEA------------IKNVELNFHTGIWESVSKPARDLLERILTRNVDSRITAEEVLSHPWIIFYTERNLR 367          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161670 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CFM8_9STRA7.370e-24197.60Kinase-like domain-containing protein n=2 Tax=Trib... [more]
A0A835ZCT2_9STRA8.870e-14971.08Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835Z3R1_9STRA1.360e-8949.65Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A836CE44_9STRA3.300e-3234.75Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835YXT3_9STRA1.750e-2731.00Kinase-like domain-containing protein n=2 Tax=Trib... [more]
F0WLC1_9STRA8.420e-2634.13cGMP-dependent protein kinase n=1 Tax=Albugo laiba... [more]
A0A523VB14_9CHLR8.120e-2333.66Non-specific serine/threonine protein kinase n=1 T... [more]
A0A197JSI3_9FUNG8.280e-2330.56Pkinase-domain-containing protein n=1 Tax=Linneman... [more]
A0A232LZ32_9EURO9.060e-2329.51Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A2U1KT37_ARTAN1.020e-2228.14Phosphoenolpyruvate carboxylase-related kinase 2 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1243461..1244465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161670|e_gw1.18.54.1
DescriptionCalcium calmodulin-dependent protein kinase kinase. Source PGD
COG categoryT
Max annot lvl121069|Pythiales
EggNOG OGsCOG0631@1|root,COG0664@1|root,KOG0585@1|root,KOG0585@2759|Eukaryota,KOG0698@2759|Eukaryota,KOG1113@2759|Eukaryota,1MC03@121069|Pythiales
Evalue2.04e-28
Seed ortholog36331.EPrPI00000020186
Hectar predicted targeting categoryother localisation
TranscriptId161992
TrackFilteredModels1
ProteinId161670
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161670gene_1494Tribonema minus UTEX_B_3156 geneContig_18 1243461..1244465 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1494_1exon_1494_1Tribonema minus UTEX_B_3156 exonContig_18 1243461..1244465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1494CDS_1494Tribonema minus UTEX_B_3156 CDSContig_18 1243461..1244465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161670Trimin1|161670|e_gw1.18.54.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1243461..1244465 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1494 ID=mRNA_1494|Name=jgi.p|Trimin1|161670|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1005bp|location=Sequence derived from alignment at Contig_18:1243461..1244465+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCAGAGAAGTGTAGTGCGTGAAGCACGTCACAAGTCTACCCGCAC
ATCGGTATTGTACAGATGTGAATCTCAAGGGTTTGTGTCCGTTGTTCCTG
TAGTGAGGAGCTCCAAAGTTACAAGCGTAAATGGCGTCATTGTCGCTGTC
AATGAGCATGTCATCTCAGGCAGGCTGGGTAAAGGTGCAACTGCCCAAGT
GTTTGAGTGTCATAGTCCTCAGTTTGGAAAAGCAGCTCTGAAGATACTGG
AGAAAAGCACAGGGTGCGAGTCGCTCCACCGTGAGATCATGGCGCTGCAG
GCTCTTAAGAACCACTCAAATATTATATCCCTGTACACTATAATAGATGA
TCCCACATCAGACATCACCTGTCTAGTAGTGGAGATGGCAGAGAGAGGGT
CGCTGGTAGGTGTGATGGTGTCGGGCCTGGAATGTCAGAGGGTCACCAGC
GACATTGTGAGTGGGTTAACACACATGCACTCGAAAGGCTTCTTACACTG
TGATGTAAAACCCGCTAATATCGTGAGAACAGCTGAAGGAATTTCAAAGC
TAGCAGATTTTGGCTGCTGTGTGCGCATGGCAGAAGGAGGGAGCGAGGCT
CAACACAGGTACTTTATGGGAACGCCGGCATTCATGGCACCTGAGATGTT
TAAGGACGGTATCGTAACCCCAGCTGTAGATGTTTGGTCGCTGGCTTCGA
CGCTCCACTATGTGGTGTATGGCACACTGCCGTTCAACTCACATCTCAGA
GGAGGGACTGCAAGGAGGGTCAGAGAAGAGGGAGACATTGAAGATTCGAT
CATGTACTGTGAGCCTTCACTCGGCAACAATGTGCGCTCTCGATACTTGA
CAAATATCGAAAGCAATTGGCACAGTGACGACTTGACAAAGTTCAATCAC
TTCTGCAAGACTGGGCTGCAAAAGAGCCCAGCACGAAGAAGCACGCTCGG
ACAGTGGAGACAGCATGAATGGTTGTATTACGCAGTGCTTAAATCTGTAA
GGTAG
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protein sequence of jgi.p|Trimin1|161670

>Trimin1|161670|e_gw1.18.54.1 ID=Trimin1|161670|e_gw1.18.54.1|Name=jgi.p|Trimin1|161670|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=335bp
MYQRSVVREARHKSTRTSVLYRCESQGFVSVVPVVRSSKVTSVNGVIVAV
NEHVISGRLGKGATAQVFECHSPQFGKAALKILEKSTGCESLHREIMALQ
ALKNHSNIISLYTIIDDPTSDITCLVVEMAERGSLVGVMVSGLECQRVTS
DIVSGLTHMHSKGFLHCDVKPANIVRTAEGISKLADFGCCVRMAEGGSEA
QHRYFMGTPAFMAPEMFKDGIVTPAVDVWSLASTLHYVVYGTLPFNSHLR
GGTARRVREEGDIEDSIMYCEPSLGNNVRSRYLTNIESNWHSDDLTKFNH
FCKTGLQKSPARRSTLGQWRQHEWLYYAVLKSVR*
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mRNA from alignment at Contig_18:1243461..1244465+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1494 ID=mRNA_1494|Name=jgi.p|Trimin1|161670|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1005bp|location=Sequence derived from alignment at Contig_18:1243461..1244465+ (Tribonema minus UTEX_B_3156 )
ATGTACCAGAGAAGTGTAGTGCGTGAAGCACGTCACAAGTCTACCCGCAC ATCGGTATTGTACAGATGTGAATCTCAAGGGTTTGTGTCCGTTGTTCCTG TAGTGAGGAGCTCCAAAGTTACAAGCGTAAATGGCGTCATTGTCGCTGTC AATGAGCATGTCATCTCAGGCAGGCTGGGTAAAGGTGCAACTGCCCAAGT GTTTGAGTGTCATAGTCCTCAGTTTGGAAAAGCAGCTCTGAAGATACTGG AGAAAAGCACAGGGTGCGAGTCGCTCCACCGTGAGATCATGGCGCTGCAG GCTCTTAAGAACCACTCAAATATTATATCCCTGTACACTATAATAGATGA TCCCACATCAGACATCACCTGTCTAGTAGTGGAGATGGCAGAGAGAGGGT CGCTGGTAGGTGTGATGGTGTCGGGCCTGGAATGTCAGAGGGTCACCAGC GACATTGTGAGTGGGTTAACACACATGCACTCGAAAGGCTTCTTACACTG TGATGTAAAACCCGCTAATATCGTGAGAACAGCTGAAGGAATTTCAAAGC TAGCAGATTTTGGCTGCTGTGTGCGCATGGCAGAAGGAGGGAGCGAGGCT CAACACAGGTACTTTATGGGAACGCCGGCATTCATGGCACCTGAGATGTT TAAGGACGGTATCGTAACCCCAGCTGTAGATGTTTGGTCGCTGGCTTCGA CGCTCCACTATGTGGTGTATGGCACACTGCCGTTCAACTCACATCTCAGA GGAGGGACTGCAAGGAGGGTCAGAGAAGAGGGAGACATTGAAGATTCGAT CATGTACTGTGAGCCTTCACTCGGCAACAATGTGCGCTCTCGATACTTGA CAAATATCGAAAGCAATTGGCACAGTGACGACTTGACAAAGTTCAATCAC TTCTGCAAGACTGGGCTGCAAAAGAGCCCAGCACGAAGAAGCACGCTCGG ACAGTGGAGACAGCATGAATGGTTGTATTACGCAGTGCTTAAATCTGTAA GGTAG
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Coding sequence (CDS) from alignment at Contig_18:1243461..1244465+

>mRNA_1494 ID=mRNA_1494|Name=jgi.p|Trimin1|161670|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1005bp|location=Sequence derived from alignment at Contig_18:1243461..1244465+ (Tribonema minus UTEX_B_3156 )
ATGTACCAGAGAAGTGTAGTGCGTGAAGCACGTCACAAGTCTACCCGCAC
ATCGGTATTGTACAGATGTGAATCTCAAGGGTTTGTGTCCGTTGTTCCTG
TAGTGAGGAGCTCCAAAGTTACAAGCGTAAATGGCGTCATTGTCGCTGTC
AATGAGCATGTCATCTCAGGCAGGCTGGGTAAAGGTGCAACTGCCCAAGT
GTTTGAGTGTCATAGTCCTCAGTTTGGAAAAGCAGCTCTGAAGATACTGG
AGAAAAGCACAGGGTGCGAGTCGCTCCACCGTGAGATCATGGCGCTGCAG
GCTCTTAAGAACCACTCAAATATTATATCCCTGTACACTATAATAGATGA
TCCCACATCAGACATCACCTGTCTAGTAGTGGAGATGGCAGAGAGAGGGT
CGCTGGTAGGTGTGATGGTGTCGGGCCTGGAATGTCAGAGGGTCACCAGC
GACATTGTGAGTGGGTTAACACACATGCACTCGAAAGGCTTCTTACACTG
TGATGTAAAACCCGCTAATATCGTGAGAACAGCTGAAGGAATTTCAAAGC
TAGCAGATTTTGGCTGCTGTGTGCGCATGGCAGAAGGAGGGAGCGAGGCT
CAACACAGGTACTTTATGGGAACGCCGGCATTCATGGCACCTGAGATGTT
TAAGGACGGTATCGTAACCCCAGCTGTAGATGTTTGGTCGCTGGCTTCGA
CGCTCCACTATGTGGTGTATGGCACACTGCCGTTCAACTCACATCTCAGA
GGAGGGACTGCAAGGAGGGTCAGAGAAGAGGGAGACATTGAAGATTCGAT
CATGTACTGTGAGCCTTCACTCGGCAACAATGTGCGCTCTCGATACTTGA
CAAATATCGAAAGCAATTGGCACAGTGACGACTTGACAAAGTTCAATCAC
TTCTGCAAGACTGGGCTGCAAAAGAGCCCAGCACGAAGAAGCACGCTCGG
ACAGTGGAGACAGCATGAATGGTTGTATTACGCAGTGCTTAAATCTGTAA
GGTAG
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