mRNA_1242 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154888
Unique NamemRNA_1242
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|154888 vs. uniprot
Match: A0A835Z580_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z580_9STRA)

HSP 1 Score: 444 bits (1141), Expect = 3.950e-158
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1 
Query:    1 GQLEVMQWLRNSAACVWHDDCVTMLIKSRFWTALSWALTAGCPVPNEAMRTAAREGNLSLLRRLNRHGGSMDAAADGAAMGNHLHILKWAFDNMPHRPASVLELAAGQGHVGVYRWAKEQGCVCRSVSMVGSLFGHGYISDFKQAVLEGAVCDCSIFNAAVARGDLGVVQWLRAQGVEWDKHTCRAAIKHVHVLKWLREEKCRWGD 618
            GQLEVMQWLRNSAACVWHDDCVTMLIKSRFWTALSWALTAGCPVPNEAMRTAAREGNLSLLRRLNRHGGSMDAAADGAAMGNHLHILKWAFDNMPHRPASVLELAAGQGHVGVYRWAKEQGCVCRSVSMVGSLFGHGYISDFKQAVLEGAVCDCSIFNAAVARGDLGVVQWLRAQGVEWDKHTCRAAIKHVHVLKWLREEKCRWGD
Sbjct:    1 GQLEVMQWLRNSAACVWHDDCVTMLIKSRFWTALSWALTAGCPVPNEAMRTAAREGNLSLLRRLNRHGGSMDAAADGAAMGNHLHILKWAFDNMPHRPASVLELAAGQGHVGVYRWAKEQGCVCRSVSMVGSLFGHGYISDFKQAVLEGAVCDCSIFNAAVARGDLGVVQWLRAQGVEWDKHTCRAAIKHVHVLKWLREEKCRWGD 206
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154888 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z580_9STRA3.950e-158100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:19804..20757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154888|gw1.18.328.1
KEGG TC1.I.1
BRITEko00000,ko03009
KEGG koko:K20224
DescriptionImportin-9
COG categoryUY
Max annot lvl3041|Chlorophyta
EggNOG OGsCOG5657@1|root,KOG2274@2759|Eukaryota,37QA4@33090|Viridiplantae,34JGE@3041|Chlorophyta
Evalue1.84e-06
Seed ortholog3067.XP_002951127.1
Hectar predicted targeting categoryother localisation
TranscriptId155210
TrackFilteredModels1
ProteinId154888
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154888gene_1242Tribonema minus UTEX_B_3156 geneContig_18 19804..20757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154888Trimin1|154888|gw1.18.328.1Tribonema minus UTEX_B_3156 polypeptideContig_18 19804..20757 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1242_2exon_1242_2Tribonema minus UTEX_B_3156 exonContig_18 19804..20353 -
exon_1242_1exon_1242_1Tribonema minus UTEX_B_3156 exonContig_18 20690..20757 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1242CDS_1242Tribonema minus UTEX_B_3156 CDSContig_18 20690..20757 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1242 ID=mRNA_1242|Name=jgi.p|Trimin1|154888|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=618bp|location=Sequence derived from alignment at Contig_18:19804..20757- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCCAACTGGAGGTCATGCAATGGCTGCGCAACTCAGCGGCGTGTGTCTG
GCATGACGACTGCGTCACGATGCTCATCAAGTCAAGGTTCTGGACTGCGC
TCAGCTGGGCCCTCACCGCAGGATGTCCGGTTCCCAACGAAGCCATGCGC
ACGGCGGCGCGTGAAGGGAACTTGAGCTTGCTGCGACGGCTAAATCGTCA
CGGGGGGAGCATGGACGCGGCAGCTGATGGGGCGGCAATGGGCAACCACC
TGCACATTCTGAAGTGGGCGTTCGATAACATGCCGCACAGGCCTGCTTCA
GTGTTGGAGCTAGCGGCTGGTCAGGGGCATGTCGGTGTCTACCGCTGGGC
GAAGGAGCAGGGGTGCGTTTGTCGAAGTGTGTCTATGGTAGGGAGCCTGT
TCGGGCATGGTTACATTAGTGATTTCAAGCAGGCGGTGTTGGAGGGCGCT
GTGTGTGACTGCAGCATATTCAATGCAGCCGTGGCGCGGGGGGACTTGGG
GGTAGTGCAGTGGTTGAGAGCACAGGGGGTGGAGTGGGATAAGCACACGT
GCCGTGCGGCCATCAAGCATGTGCACGTGCTCAAGTGGCTGAGAGAGGAG
AAATGCAGATGGGGTGAC
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protein sequence of jgi.p|Trimin1|154888

>Trimin1|154888|gw1.18.328.1 ID=Trimin1|154888|gw1.18.328.1|Name=jgi.p|Trimin1|154888|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=206bp
GQLEVMQWLRNSAACVWHDDCVTMLIKSRFWTALSWALTAGCPVPNEAMR
TAAREGNLSLLRRLNRHGGSMDAAADGAAMGNHLHILKWAFDNMPHRPAS
VLELAAGQGHVGVYRWAKEQGCVCRSVSMVGSLFGHGYISDFKQAVLEGA
VCDCSIFNAAVARGDLGVVQWLRAQGVEWDKHTCRAAIKHVHVLKWLREE
KCRWGD
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mRNA from alignment at Contig_18:19804..20757-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1242 ID=mRNA_1242|Name=jgi.p|Trimin1|154888|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=954bp|location=Sequence derived from alignment at Contig_18:19804..20757- (Tribonema minus UTEX_B_3156 )
GGCCAACTGGAGGTCATGCAATGGCTGCGCAACTCAGCGGCGTGTGTCTG
GCATGACGACTGCGTCACGTAAGTGCGACAAACTTTATTGATTGATGGTA
ATGAACCTGCACACAAATGTGAACGCATTACGCTCAGAAGCTCACAATTC
CAGGCGAGGCCTCGCCCAAGCAACGCGAATGATGTTGTGTACTGTGTACT
GCATGTCTGTGCTTGCTTTCATAGAGACATAGATATCAATTGCTTTCTGC
AGCCACCAGTGCGCAGTGCCGTTGTCATGGTCTCGCTACGGCCACGTGTT
TGGGTCGCCCACGCACAATTGATGTGAATTGCTCAAACGCACATTTGGTC
ACTCGTAGGAATATCACATAACCGTGCAACTGCGTGATGTGTGCGCATGC
GCAGGATGCTCATCAAGTCAAGGTTCTGGACTGCGCTCAGCTGGGCCCTC
ACCGCAGGATGTCCGGTTCCCAACGAAGCCATGCGCACGGCGGCGCGTGA
AGGGAACTTGAGCTTGCTGCGACGGCTAAATCGTCACGGGGGGAGCATGG
ACGCGGCAGCTGATGGGGCGGCAATGGGCAACCACCTGCACATTCTGAAG
TGGGCGTTCGATAACATGCCGCACAGGCCTGCTTCAGTGTTGGAGCTAGC
GGCTGGTCAGGGGCATGTCGGTGTCTACCGCTGGGCGAAGGAGCAGGGGT
GCGTTTGTCGAAGTGTGTCTATGGTAGGGAGCCTGTTCGGGCATGGTTAC
ATTAGTGATTTCAAGCAGGCGGTGTTGGAGGGCGCTGTGTGTGACTGCAG
CATATTCAATGCAGCCGTGGCGCGGGGGGACTTGGGGGTAGTGCAGTGGT
TGAGAGCACAGGGGGTGGAGTGGGATAAGCACACGTGCCGTGCGGCCATC
AAGCATGTGCACGTGCTCAAGTGGCTGAGAGAGGAGAAATGCAGATGGGG
TGAC
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Coding sequence (CDS) from alignment at Contig_18:19804..20757-

>mRNA_1242 ID=mRNA_1242|Name=jgi.p|Trimin1|154888|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=618bp|location=Sequence derived from alignment at Contig_18:19804..20757- (Tribonema minus UTEX_B_3156 )
GGCCAACTGGAGGTCATGCAATGGCTGCGCAACTCAGCGGCGTGTGTCTG
GCATGACGACTGCGTCACGATGCTCATCAAGTCAAGGTTCTGGACTGCGC
TCAGCTGGGCCCTCACCGCAGGATGTCCGGTTCCCAACGAAGCCATGCGC
ACGGCGGCGCGTGAAGGGAACTTGAGCTTGCTGCGACGGCTAAATCGTCA
CGGGGGGAGCATGGACGCGGCAGCTGATGGGGCGGCAATGGGCAACCACC
TGCACATTCTGAAGTGGGCGTTCGATAACATGCCGCACAGGCCTGCTTCA
GTGTTGGAGCTAGCGGCTGGTCAGGGGCATGTCGGTGTCTACCGCTGGGC
GAAGGAGCAGGGGTGCGTTTGTCGAAGTGTGTCTATGGTAGGGAGCCTGT
TCGGGCATGGTTACATTAGTGATTTCAAGCAGGCGGTGTTGGAGGGCGCT
GTGTGTGACTGCAGCATATTCAATGCAGCCGTGGCGCGGGGGGACTTGGG
GGTAGTGCAGTGGTTGAGAGCACAGGGGGTGGAGTGGGATAAGCACACGT
GCCGTGCGGCCATCAAGCATGTGCACGTGCTCAAGTGGCTGAGAGAGGAG
AAATGCAGATGGGGTGAC
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