mRNA_1420 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|153606
Unique NamemRNA_1420
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: A0A835ZED3_9STRA (SET domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZED3_9STRA)

HSP 1 Score: 276 bits (707), Expect = 2.390e-94
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1
Query:    1 ETNLKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCNAGDRPGHGLTCNARFTETGWLVATRTIPAGAEIITKYGGGYWRSFN 399
            ETNLKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCNAGDRPGHGLTCNARFTETGWLVATRTIPAGAEIITKYGGGYWRSFN
Sbjct:    1 ETNLKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCNAGDRPGHGLTCNARFTETGWLVATRTIPAGAEIITKYGGGYWRSFN 133          
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: A0A351ZVZ4_9BACT (SET domain-containing protein-lysine N-methyltransferase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A351ZVZ4_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 3.900e-15
Identity = 51/125 (40.80%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   10 LKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCNAGDRPGHGLTCNARFTETG---WLVATRTIPAGAEIITKYG 375
            + V  S+IP AGLGL++ ++ EV         RI++YTGE+LT +Q   RY    +    GL       +DAR T + VARY  A D  G G   NA +   G   W+VATR I  G EI+T YG
Sbjct:   42 VSVRKSSIPKAGLGLYAERSFEVDD-------RIVEYTGEKLTTDQYERRYK-SDQLGSYGLALSEKYVIDARRTDAGVARY--ACDYHGSGRKPNAEYVNFGGRVWIVATRRIKQGEEILTDYG 156          
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: A0A3D3JGT2_9BACT (SET domain-containing protein-lysine N-methyltransferase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3D3JGT2_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 3.690e-12
Identity = 49/125 (39.20%), Postives = 66/125 (52.80%), Query Frame = 1
Query:   10 LKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCNAGDRPGHGLTCNARFTETGW---LVATRTIPAGAEIITKYG 375
            L+VA STIP AG+GLF+ +  +           I +Y GE+LT +Q + RYG        G++  +   +DAR T + VARY  A D  G G   NA +   G    +VA R I AG EI+T YG
Sbjct:   42 LRVAKSTIPLAGMGLFATRGFKKDEV-------ICEYGGEKLTVDQYDRRYGDDAMGS-YGIQLDSKHVIDARKTSAGVARY--ACDYHGSGRRPNAEYVTDGGKIHIVAMRRIAAGEEILTDYG 156          
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: A0A7C1JRQ2_9BACT (SET domain-containing protein n=1 Tax=Chlorobi bacterium TaxID=2268192 RepID=A0A7C1JRQ2_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 4.750e-12
Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 1
Query:   10 LKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARYG-VGPRPYVLGLRRPAGMNVDARSTQSSVAR----YCNAGDRPGHGLTCNARFTETGWLVATRTIPAGAEIITKYG 375
            ++V PSTIPGAGLGLF+V+ +         GV +  Y G++L+    NARY  +G  PY + L   A + +DAR T + VAR    Y  +G RP      + +  E  W +A   I  G E++  YG
Sbjct:   55 VEVRPSTIPGAGLGLFAVRYLP-------KGVFLFNYDGDRLSVADYNARYADMGFGPYAIELT--ASVIIDARRTDAGVARFICSYHGSGKRPNVEYVSSGKCVEV-WTIAP--IETGEELLADYG 169          
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: A0A1M3QX06_9SPHI (SET domain-containing protein-lysine N-methyltransferase n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1M3QX06_9SPHI)

HSP 1 Score: 67.0 bits (162), Expect = 1.800e-11
Identity = 50/136 (36.76%), Postives = 68/136 (50.00%), Query Frame = 1
Query:    1 ETNLKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCNAGDRPG----HGLTCNARFTETG---WLVATRTIPAGAEIITKYGGGYW 387
            E  L V  ST+P AG GLF+ KTI         G RI++Y G   T ++V+  +  G   Y+  + R   +N  AR     +ARY N  D  G     G+T NA +   G   ++ +T+ IPAGAEI   YG  YW
Sbjct:    5 EKQLVVKKSTLPNAGKGLFTRKTIP-------KGTRIVEYKGTITTWKEVD--HNEGSNGYIYYINRNTVIN--ARPHPDYLARYAN--DAKGIAKLKGVTNNAVYATEGLKAYIESTKEIPAGAEIFVGYGKEYW 127          
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: UPI0019848C60 (SET domain-containing protein n=1 Tax=Cytophagaceae bacterium TaxID=2026729 RepID=UPI0019848C60)

HSP 1 Score: 67.0 bits (162), Expect = 4.550e-11
Identity = 48/132 (36.36%), Postives = 67/132 (50.76%), Query Frame = 1
Query:    1 ETNLKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARY---GVGPRPYVLGLRRPAGMNVDARSTQSSVARY-CNAGDRPGHGLTCNARFTETGW---LVATRTIPAGAEIITKYG 375
            E    VA ST+P AGLGLF       T  +   G  +++Y+GE +T +Q N RY   G G     LG RR     +DAR T S + RY C+A    G  L  N ++ +      ++A R I +G+EI+  YG
Sbjct:   42 ELGFWVAQSTVPNAGLGLF-------TDRKYKRGDTVLEYSGEVITTKQYNERYVDFGYGEYGMTLGTRRV----IDARKTSSGLGRYVCDA---YGSELKKNVQYEDYKGKINIIALRKIKSGSEILVSYG 159          
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: A0A537IFC2_9BACT (SET domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A537IFC2_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 7.370e-11
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 1
Query:    7 NLKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCN--AGDRPGHGLTCNARFTETG---WLVATRTIPAGAEIITKYGGGYWRS 393
            +LKV  ST+P AG GLF+ K+++        G RI +Y G   T ++  A+   G   Y+  + R     +DA+ +++  ARY N  +G +   GLT N+ + E G   ++ A + IPAG+EI+  YG  YW++
Sbjct:    5 HLKVKKSTLPKAGKGLFTTKSLK-------KGTRIAEYRGRITTWKK--AKEEEGDNAYIFYVNR--NHVIDAKPSRAK-ARYANDASGLQRIKGLTNNSEYVEDGVKVYIEAKKDIPAGSEILVGYGREYWKT 126          
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: UPI000370E371 (SET domain-containing protein n=1 Tax=Cytophaga aurantiaca TaxID=29530 RepID=UPI000370E371)

HSP 1 Score: 66.2 bits (160), Expect = 9.200e-11
Identity = 46/131 (35.11%), Postives = 65/131 (49.62%), Query Frame = 1
Query:    1 ETNLKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARY---GVGPRPYVLGLRRPAGMNVDARSTQSSVARYCNAGDRPGHGLTCNARFTETGWLV---ATRTIPAGAEIITKYG 375
            E + KVA ST+P AGLGLF++K I+        G   + Y GE+LT +Q N RY   G G     LG +      +DAR T S + R+    D  G G   N  + +   ++   A + I AG E++  YG
Sbjct:   42 ELSFKVAQSTVPFAGLGLFTLKKIK-------KGAVALLYEGEKLTVDQYNKRYDKSGHGEYGMTLGKKHV----IDARETSSGLGRFVC--DYTGSGKKANVEYLDNEGVIEITAKKKIKAGEELLVDYG 159          
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: C1FIJ2_MICCC (SET domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FIJ2_MICCC)

HSP 1 Score: 65.5 bits (158), Expect = 9.420e-11
Identity = 49/134 (36.57%), Postives = 67/134 (50.00%), Query Frame = 1
Query:   10 LKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRII--KYTGEQLTNEQVNARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCNAGDRPGHGLTCNARFTE-----TGWLVATRTIPAGAEIITKYGGGYWR 390
            L+V PS IPGAGLGLF+ K +        AG  +    Y G+ LT  Q  A      + YV+ L     ++VDA +    +ARY N     G G   N RF +     +  ++ATR + AG E+  +YG GYWR
Sbjct:   24 LRVQPSLIPGAGLGLFTAKDV-------LAGTVLTGCSYGGDVLTFTQARA-LPPDAKDYVMALH--FNVHVDAANHPGYLARYINDNLTDG-GRHRNVRFVKDPARRSATVMATRDLRAGEELYAEYGDGYWR 146          
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Match: A0A1Q3TPU7_9SPHI (SET domain-containing protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1Q3TPU7_9SPHI)

HSP 1 Score: 61.6 bits (148), Expect = 1.880e-9
Identity = 47/136 (34.56%), Postives = 70/136 (51.47%), Query Frame = 1
Query:    1 ETNLKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQVNARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCN--AGDRPGHGLTCNARFTETG---WLVATRTIPAGAEIITKYGGGYWRS 393
            +  L + PST+PGAG+GLF+  TI++ R     G  II+Y G   T + +  ++ +   PY+  + R   +N         +ARY N  AG     G+  N+ F   G   ++ ATR IPAG+EI   YG  YW +
Sbjct:    5 DEQLFIQPSTLPGAGMGLFT--TIDIPR-----GTLIIEYLGTVTTWKDI--KHDID-NPYLCYVNRHHVIN--GAPHPEYLARYANDAAGPVRLEGVRNNSFFEIDGTRVFIKATRRIPAGSEIFVNYGKDYWET 128          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153606 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZED3_9STRA2.390e-94100.00SET domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A351ZVZ4_9BACT3.900e-1540.80SET domain-containing protein-lysine N-methyltrans... [more]
A0A3D3JGT2_9BACT3.690e-1239.20SET domain-containing protein-lysine N-methyltrans... [more]
A0A7C1JRQ2_9BACT4.750e-1237.01SET domain-containing protein n=1 Tax=Chlorobi bac... [more]
A0A1M3QX06_9SPHI1.800e-1136.76SET domain-containing protein-lysine N-methyltrans... [more]
UPI0019848C604.550e-1136.36SET domain-containing protein n=1 Tax=Cytophagacea... [more]
A0A537IFC2_9BACT7.370e-1134.33SET domain-containing protein n=1 Tax=Bacteroidete... [more]
UPI000370E3719.200e-1135.11SET domain-containing protein n=1 Tax=Cytophaga au... [more]
C1FIJ2_MICCC9.420e-1136.57SET domain-containing protein n=1 Tax=Micromonas c... [more]
A0A1Q3TPU7_9SPHI1.880e-934.56SET domain-containing protein n=2 Tax=Bacteroidete... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1004307..1004705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|153606|gw1.18.318.1
BRITEko00000
KEGG koko:K07117
DescriptionSET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
COG categoryS
Max annot lvl976|Bacteroidetes
EggNOG OGsCOG2940@1|root,COG2940@2|Bacteria,4NQ3D@976|Bacteroidetes
Evalue5.48e-12
Seed ortholog700598.Niako_5254
Hectar predicted targeting categoryother localisation
TranscriptId153928
TrackFilteredModels1
ProteinId153606
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153606gene_1420Tribonema minus UTEX_B_3156 geneContig_18 1004307..1004705 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1420_1exon_1420_1Tribonema minus UTEX_B_3156 exonContig_18 1004307..1004705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1420CDS_1420Tribonema minus UTEX_B_3156 CDSContig_18 1004307..1004705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153606Trimin1|153606|gw1.18.318.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1004307..1004705 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1420 ID=mRNA_1420|Name=jgi.p|Trimin1|153606|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=399bp|location=Sequence derived from alignment at Contig_18:1004307..1004705- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAAACAAATTTGAAGGTCGCGCCTTCCACAATACCCGGTGCCGGACTTGG
ACTATTCAGTGTAAAGACAATTGAAGTGACGCGGGCACAGCGTGCTGCGG
GTGTTCGCATCATCAAATACACAGGGGAGCAACTGACAAATGAGCAGGTC
AACGCACGCTACGGTGTTGGCCCTCGGCCATACGTGCTCGGCTTGCGGCG
ACCAGCAGGTATGAATGTGGATGCCAGGAGCACACAGTCTTCTGTTGCCA
GGTACTGCAATGCAGGCGACCGCCCTGGACATGGGCTTACATGCAATGCT
CGCTTCACAGAAACAGGGTGGTTAGTCGCAACCCGCACTATACCAGCTGG
TGCTGAGATCATTACCAAATATGGTGGGGGCTACTGGAGATCTTTTAAT
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protein sequence of jgi.p|Trimin1|153606

>Trimin1|153606|gw1.18.318.1 ID=Trimin1|153606|gw1.18.318.1|Name=jgi.p|Trimin1|153606|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=133bp
ETNLKVAPSTIPGAGLGLFSVKTIEVTRAQRAAGVRIIKYTGEQLTNEQV
NARYGVGPRPYVLGLRRPAGMNVDARSTQSSVARYCNAGDRPGHGLTCNA
RFTETGWLVATRTIPAGAEIITKYGGGYWRSFN
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mRNA from alignment at Contig_18:1004307..1004705-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1420 ID=mRNA_1420|Name=jgi.p|Trimin1|153606|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=399bp|location=Sequence derived from alignment at Contig_18:1004307..1004705- (Tribonema minus UTEX_B_3156 )
GAAACAAATTTGAAGGTCGCGCCTTCCACAATACCCGGTGCCGGACTTGG ACTATTCAGTGTAAAGACAATTGAAGTGACGCGGGCACAGCGTGCTGCGG GTGTTCGCATCATCAAATACACAGGGGAGCAACTGACAAATGAGCAGGTC AACGCACGCTACGGTGTTGGCCCTCGGCCATACGTGCTCGGCTTGCGGCG ACCAGCAGGTATGAATGTGGATGCCAGGAGCACACAGTCTTCTGTTGCCA GGTACTGCAATGCAGGCGACCGCCCTGGACATGGGCTTACATGCAATGCT CGCTTCACAGAAACAGGGTGGTTAGTCGCAACCCGCACTATACCAGCTGG TGCTGAGATCATTACCAAATATGGTGGGGGCTACTGGAGATCTTTTAAT
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Coding sequence (CDS) from alignment at Contig_18:1004307..1004705-

>mRNA_1420 ID=mRNA_1420|Name=jgi.p|Trimin1|153606|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=399bp|location=Sequence derived from alignment at Contig_18:1004307..1004705- (Tribonema minus UTEX_B_3156 )
GAAACAAATTTGAAGGTCGCGCCTTCCACAATACCCGGTGCCGGACTTGG
ACTATTCAGTGTAAAGACAATTGAAGTGACGCGGGCACAGCGTGCTGCGG
GTGTTCGCATCATCAAATACACAGGGGAGCAACTGACAAATGAGCAGGTC
AACGCACGCTACGGTGTTGGCCCTCGGCCATACGTGCTCGGCTTGCGGCG
ACCAGCAGGTATGAATGTGGATGCCAGGAGCACACAGTCTTCTGTTGCCA
GGTACTGCAATGCAGGCGACCGCCCTGGACATGGGCTTACATGCAATGCT
CGCTTCACAGAAACAGGGTGGTTAGTCGCAACCCGCACTATACCAGCTGG
TGCTGAGATCATTACCAAATATGGTGGGGGCTACTGGAGATCTTTTAAT
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