mRNA_1525 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A835Z690_9STRA (TM2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z690_9STRA) HSP 1 Score: 182 bits (462), Expect = 1.930e-58 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1
Query: 1 CECDTGYVSIDSEACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
CECDTGYVSIDSEACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL
Sbjct: 1 CECDTGYVSIDSEACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 87
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A836C9M7_9STRA (TM2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9M7_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.520e-45 Identity = 68/87 (78.16%), Postives = 75/87 (86.21%), Query Frame = 1
Query: 1 CECDTGYVSIDSEACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
CEC+TGYVS DS C+Y QKSELV FLLSFFV ++GADWFYLA GDAGYIV GVFKL+ GGFG+WWL+DWIRILA AFPDGNGV L
Sbjct: 27 CECNTGYVSTDSLQCNYAQKSELVTFLLSFFVGYLGADWFYLADGDAGYIVAGVFKLIITGGFGIWWLIDWIRILANAFPDGNGVEL 113
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A816GSD5_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A816GSD5_9BILA) HSP 1 Score: 119 bits (299), Expect = 6.720e-33 Identity = 57/89 (64.04%), Postives = 70/89 (78.65%), Query Frame = 1
Query: 1 CECDT-GYVSIDS-EACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
C C T GYV++DS + C+Y+QK +LVAFLLSF V GADWFYLA+G+ GYI GVFKL+T GG G+W LVDWIR+L +FPDG GV+L
Sbjct: 48 CNCTTAGYVTVDSSKPCAYQQKKKLVAFLLSFLVGVFGADWFYLAAGNGGYIAAGVFKLLTFGGLGIWALVDWIRVLTDSFPDGQGVSL 136
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A813W5K7_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A813W5K7_ADIRI) HSP 1 Score: 119 bits (298), Expect = 7.780e-33 Identity = 51/89 (57.30%), Postives = 68/89 (76.40%), Query Frame = 1
Query: 1 CECDTGYVSIDSEA--CSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
C+CD G+++ + C+Y QKS+L +FLLSFF+ GADW+YL+ G+ GYI +FK++T+GGFG+WWLVDWIRIL AFPDGNG L
Sbjct: 40 CKCDRGWINSKDQTNYCNYEQKSQLASFLLSFFLGLFGADWYYLSVGNGGYIAGAIFKMLTLGGFGIWWLVDWIRILTNAFPDGNGQPL 128
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A814FBL4_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A814FBL4_ADIRI) HSP 1 Score: 118 bits (295), Expect = 2.650e-32 Identity = 58/89 (65.17%), Postives = 67/89 (75.28%), Query Frame = 1
Query: 1 CECDT-GYVSIDS-EACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
C C T GYV++ S + C+Y QK +L AFLLSFF+ GADWFYLA+G GYI GVFKL+T+GGFGVW L DWIRIL FPDG GVAL
Sbjct: 48 CNCTTSGYVTVQSSQPCAYEQKKKLNAFLLSFFIGCFGADWFYLAAGSGGYITAGVFKLLTLGGFGVWALADWIRILTDNFPDGQGVAL 136
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A819MKF4_9BILA (Hypothetical protein n=2 Tax=Rotaria TaxID=231623 RepID=A0A819MKF4_9BILA) HSP 1 Score: 117 bits (293), Expect = 6.150e-32 Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 1
Query: 1 CECDTGYV--SIDSEACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
C C+ G+ S+ C+Y+QKS+L AFLLSFF +GADWFYL+ G+ GYI GVFKL+T+GG G+WWLVDWIRIL AF DG GVAL
Sbjct: 51 CSCNQGWTFPRDGSDRCTYQQKSKLAAFLLSFFAGGLGADWFYLSVGNGGYIAAGVFKLLTLGGIGIWWLVDWIRILTNAFLDGQGVAL 139
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A836CJ53_9STRA (TM2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ53_9STRA) HSP 1 Score: 115 bits (288), Expect = 8.480e-32 Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = 1
Query: 1 CECDTGYVSIDSEA----CSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
CECD Y++ + + C+Y QKS+L FL+SFFV +G DWFYLA G+ YIV GV KL+T GGFG+WWLVD+IR+L AFPDGN V L
Sbjct: 1 CECDGSYITHEPDPQTSICNYHQKSQLTTFLISFFVGCLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWLVDFIRVLVNAFPDGNDVPL 91
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A835YS76_9STRA (TM2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS76_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.870e-31 Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 1
Query: 1 CECDTGYVSIDS-EACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
CECD GY++ + C Y QKS+L FL+SFFV ++G DWFYLA G+ YIV GV KL+T GGFG+WW+VD+IR++ AFPDGN + L
Sbjct: 43 CECDGGYITREPYPPCDYHQKSQLTTFLISFFVGWLGVDWFYLAVGNPWYIVAGVVKLITAGGFGIWWIVDFIRVIVNAFPDGNDLPL 130
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A814T286_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A814T286_9BILA) HSP 1 Score: 115 bits (289), Expect = 2.220e-31 Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 1
Query: 1 CECDTGYVSID-SEACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
C C G+++ D S C+Y+QK +L AFLLSFFV F G DWFYL+ + YI+ G+ KL+T+GGFG+WW+VDWIR+LA AF DGNG L
Sbjct: 47 CICSKGWITTDLSTGCTYQQKLKLTAFLLSFFVGFFGVDWFYLSVSNPAYIIAGIIKLITLGGFGIWWIVDWIRLLADAFLDGNGFPL 134
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Match: A0A814Q567_ADIRI (Hypothetical protein n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A814Q567_ADIRI) HSP 1 Score: 115 bits (289), Expect = 2.290e-31 Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = 1
Query: 1 CECDTG--YVSIDSEACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIVTGVFKLVTVGGFGVWWLVDWIRILAGAFPDGNGVAL 261
C C G Y + CSY+QKS+L AFLLSFF+ +GADWFYL+ G+AGYIV GVFKL+T+GG G+WWLVDWIRIL +F DG GV L
Sbjct: 48 CICHRGWTYGRDGATQCSYQQKSKLAAFLLSFFLGGLGADWFYLSVGNAGYIVAGVFKLLTLGGIGIWWLVDWIRILTNSFLDGQGVGL 136 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|141257 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1525 ID=mRNA_1525|Name=jgi.p|Trimin1|141257|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=261bp|location=Sequence derived from alignment at Contig_18:1326980..1327240- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGTGAATGTGACACGGGGTATGTGTCTATCGACAGTGAGGCGTGCAGCTAback to top protein sequence of jgi.p|Trimin1|141257 >Trimin1|141257|gw1.18.178.1 ID=Trimin1|141257|gw1.18.178.1|Name=jgi.p|Trimin1|141257|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=87bp CECDTGYVSIDSEACSYRQKSELVAFLLSFFVVFVGADWFYLASGDAGYIback to top mRNA from alignment at Contig_18:1326980..1327240- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1525 ID=mRNA_1525|Name=jgi.p|Trimin1|141257|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=261bp|location=Sequence derived from alignment at Contig_18:1326980..1327240- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_18:1326980..1327240- >mRNA_1525 ID=mRNA_1525|Name=jgi.p|Trimin1|141257|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=261bp|location=Sequence derived from alignment at Contig_18:1326980..1327240- (Tribonema minus UTEX_B_3156 )back to top |