mRNA_1498 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129861
Unique NamemRNA_1498
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129861 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1251967..1252464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129861|gw1.18.18.1
Hectar predicted targeting categoryother localisation
TranscriptId130183
TrackFilteredModels1
ProteinId129861
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129861gene_1498Tribonema minus UTEX_B_3156 geneContig_18 1251967..1252464 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1498_1exon_1498_1Tribonema minus UTEX_B_3156 exonContig_18 1251967..1252464 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1498CDS_1498Tribonema minus UTEX_B_3156 CDSContig_18 1251967..1252464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129861Trimin1|129861|gw1.18.18.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1251967..1252464 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1498 ID=mRNA_1498|Name=jgi.p|Trimin1|129861|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=498bp|location=Sequence derived from alignment at Contig_18:1251967..1252464- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGAAAATGTCCGCATGGTAGACAGCAGAGCCAGTGTAAGGAGTGCGGAGG
AAAGGGCGTATGCCCTCATGGAAGGTTGCGGCACCGATGCAAGCCTTGTG
GCGGCGCCAGTATATGCGTTCATCAAAAAATGAGGGATACATGTAGGGAA
TGTCAGGGCCCAGGTATATGCGAGCACAATCGAAGGCGAAGTGATTGTCG
CGAATGCGGAGGAGTGAATGTGTGCGAACATGATCGGCTCCGTGCTCAGT
GCAAGGAATGCCTCGGTTCGGCGATGTGCCACCACGGACGAAAGAGGAGT
ACTTGCAAGGAATGCGATGGGTCTCAGATATGTGAACATAACAGACAGCG
GCACAATTGCATCGACTGCGACGGGGCCAGCATCTGTCACCATGGCAAAA
GGCGATGTCGATGCCATGAATGCGGAGGCTCCAGCCTCTGCGAACATAAC
ATCACCCGAGCCGTCTGTCGTGTGTGCAACCCCTCATGTGCGTGTCAG
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protein sequence of jgi.p|Trimin1|129861

>Trimin1|129861|gw1.18.18.1 ID=Trimin1|129861|gw1.18.18.1|Name=jgi.p|Trimin1|129861|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=166bp
GKCPHGRQQSQCKECGGKGVCPHGRLRHRCKPCGGASICVHQKMRDTCRE
CQGPGICEHNRRRSDCRECGGVNVCEHDRLRAQCKECLGSAMCHHGRKRS
TCKECDGSQICEHNRQRHNCIDCDGASICHHGKRRCRCHECGGSSLCEHN
ITRAVCRVCNPSCACQ
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mRNA from alignment at Contig_18:1251967..1252464-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1498 ID=mRNA_1498|Name=jgi.p|Trimin1|129861|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=498bp|location=Sequence derived from alignment at Contig_18:1251967..1252464- (Tribonema minus UTEX_B_3156 )
GGAAAATGTCCGCATGGTAGACAGCAGAGCCAGTGTAAGGAGTGCGGAGG
AAAGGGCGTATGCCCTCATGGAAGGTTGCGGCACCGATGCAAGCCTTGTG
GCGGCGCCAGTATATGCGTTCATCAAAAAATGAGGGATACATGTAGGGAA
TGTCAGGGCCCAGGTATATGCGAGCACAATCGAAGGCGAAGTGATTGTCG
CGAATGCGGAGGAGTGAATGTGTGCGAACATGATCGGCTCCGTGCTCAGT
GCAAGGAATGCCTCGGTTCGGCGATGTGCCACCACGGACGAAAGAGGAGT
ACTTGCAAGGAATGCGATGGGTCTCAGATATGTGAACATAACAGACAGCG
GCACAATTGCATCGACTGCGACGGGGCCAGCATCTGTCACCATGGCAAAA
GGCGATGTCGATGCCATGAATGCGGAGGCTCCAGCCTCTGCGAACATAAC
ATCACCCGAGCCGTCTGTCGTGTGTGCAACCCCTCATGTGCGTGTCAG
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Coding sequence (CDS) from alignment at Contig_18:1251967..1252464-

>mRNA_1498 ID=mRNA_1498|Name=jgi.p|Trimin1|129861|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=498bp|location=Sequence derived from alignment at Contig_18:1251967..1252464- (Tribonema minus UTEX_B_3156 )
GGAAAATGTCCGCATGGTAGACAGCAGAGCCAGTGTAAGGAGTGCGGAGG
AAAGGGCGTATGCCCTCATGGAAGGTTGCGGCACCGATGCAAGCCTTGTG
GCGGCGCCAGTATATGCGTTCATCAAAAAATGAGGGATACATGTAGGGAA
TGTCAGGGCCCAGGTATATGCGAGCACAATCGAAGGCGAAGTGATTGTCG
CGAATGCGGAGGAGTGAATGTGTGCGAACATGATCGGCTCCGTGCTCAGT
GCAAGGAATGCCTCGGTTCGGCGATGTGCCACCACGGACGAAAGAGGAGT
ACTTGCAAGGAATGCGATGGGTCTCAGATATGTGAACATAACAGACAGCG
GCACAATTGCATCGACTGCGACGGGGCCAGCATCTGTCACCATGGCAAAA
GGCGATGTCGATGCCATGAATGCGGAGGCTCCAGCCTCTGCGAACATAAC
ATCACCCGAGCCGTCTGTCGTGTGTGCAACCCCTCATGTGCGTGTCAG
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