mRNA_15371 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353711
Unique NamemRNA_15371
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|353711 vs. uniprot
Match: A0A836CI76_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI76_9STRA)

HSP 1 Score: 208 bits (529), Expect = 2.240e-67
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1
Query:    1 MRLASGSGDSNAPIGAVNGGGGEAFTAGDAGGNDADCSGDEYSIRSMSVDSDVESISQEVDEDGCHARKANNDAGDACSCGLXXXXXXXXXXXXXXXDSSNHCQPVRNLISEQESAVLAATHALASG 381
            MRLASGSGDSNAPIGAVNGGGGEAFTAGDAGGNDADCSGDEYSIRSMSVDSDVESISQEVDEDGCHARKANNDAGDACSCGLXXXXXXXXXXXXXXXDSSNHCQPVRNLISEQESAVLAATHALASG
Sbjct:    1 MRLASGSGDSNAPIGAVNGGGGEAFTAGDAGGNDADCSGDEYSIRSMSVDSDVESISQEVDEDGCHARKANNDAGDACSCGLXXXXXXXXXXXXXXXDSSNHCQPVRNLISEQESAVLAATHALASG 127          
BLAST of jgi.p|Trimin1|353711 vs. uniprot
Match: A0A835YW62_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW62_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.860e-31
Identity = 71/106 (66.98%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    4 RLASGSGDSNAPIGAVNGGGGEAFTAGDAGGNDADCSGDEYSIRSMSVDSDVESISQEVDEDGCHARKANNDAGDACSCGLXXXXXXXXXXXXXXXDSSNHCQPVR 321
            R ASGS  SN P  AV GGGGEAFTAGDAGG+D DCSG EYSI SM VDSDVESISQ+V E+GC  RKANNDAGDACS GL               DSSN+C+PVR
Sbjct:  194 RAASGSVGSNVPTEAVTGGGGEAFTAGDAGGDDTDCSGHEYSIHSMGVDSDVESISQDVAENGCRERKANNDAGDACSSGLDAGDSRDAGSDVWLSDSSNNCKPVR 299          
BLAST of jgi.p|Trimin1|353711 vs. uniprot
Match: A0A836CJ94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ94_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.340e-30
Identity = 69/108 (63.89%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 MRLASGSGDSNAPIGAVNGGGGEAFTAGDAGGNDADCSGDEYSIRSMSVDSDVESISQEVDEDGCHARKANNDAGDACSCG-LXXXXXXXXXXXXXXXDSSNHCQPVR 321
            MR ASGSGDSNAP GAVNGG GEAFTAGDA G D DCSG++YSI S+ V +DV S SQEVDE+ CH RKAN+DAG ACS G L               DSSN+C+PVR
Sbjct:   65 MRTASGSGDSNAPAGAVNGGEGEAFTAGDADGGDDDCSGNDYSIHSLDVGADVVSASQEVDENSCHERKANDDAGGACSGGGLNAGESSDAGDDAWDSDSSNNCKPVR 172          
BLAST of jgi.p|Trimin1|353711 vs. uniprot
Match: A0A836CIQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIQ7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.150e-20
Identity = 66/109 (60.55%), Postives = 75/109 (68.81%), Query Frame = -2
Query:    3 FLTGWQWLLLSESEASLPASLLSPASKPQLQASPASLFALRA*QPSSSTSWLM--LSTSLSTLIERMLYSSPLQSASLPPASPAVNASPPPPLTAPIGALLSPLPLASR 323
            F+ G   LLLSES ASLPASLLSP SKP LQA PAS+FA  +    S+TSWL   LS   ST  E ML+SSPLQS+S    +PA NASP PP T P  A+L PLPLA+R
Sbjct:    5 FIAGLHLLLLSESPASLPASLLSPTSKPPLQAPPASVFASLSRLLLSATSWLTQRLSALASTSSEWMLWSSPLQSSS---PAPAFNASPSPPSTTPARAMLWPLPLAAR 110          
BLAST of jgi.p|Trimin1|353711 vs. uniprot
Match: A0A835Z7P8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7P8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.450e-12
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query:   64 GEAFTAGDAGGNDADCSGDEYSIRSMSVDSDVESISQEVDEDGCHARKANNDAGDACSCG 243
            GEA TAGDAGG+D DCSG++++I S+ VD++ +S+SQEV E+ CH  + + D GDACS G
Sbjct:  180 GEALTAGDAGGSDDDCSGNDHNIHSLDVDANHDSVSQEVAENSCHESETHTDTGDACSAG 239          
BLAST of jgi.p|Trimin1|353711 vs. uniprot
Match: A0A835Z6U3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.840e-12
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   64 GEAFTAGDAGGNDADCSGDEYSIRSMSVDSDVESISQEVDEDGCHARKANNDAGDACSCG 243
            GEA TAGDAGG+D DCSGD++SI S+ VD++ +S+ QEV E+  H  + N DAG ACS G
Sbjct:   49 GEALTAGDAGGSDGDCSGDDHSIHSLDVDANHDSVGQEVAENSSHESETNTDAGGACSAG 108          
BLAST of jgi.p|Trimin1|353711 vs. uniprot
Match: A0A835YQW4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQW4_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.040e-8
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   94 GNDADCSGDEYSIRSMSVDSDVESISQEVDEDGCHARKANNDAGDACS 237
            G D DCSGDEYSI S+ VD+DV S+SQEV E+ CH  + N +AG  CS
Sbjct:  211 GGDDDCSGDEYSIHSLDVDADVNSVSQEVAENSCHESETNTNAGGTCS 258          
BLAST of jgi.p|Trimin1|353711 vs. uniprot
Match: A0A835ZGC1_9STRA (S1 motif domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC1_9STRA)

HSP 1 Score: 789 bits (2037), Expect = 1.260e-285
Identity = 465/465 (100.00%), Postives = 465/465 (100.00%), Query Frame = 1
Query:    1 MQQQAAMTAMEAELPQGDGARTGHGSKASAQLAAGTLAGGMAGYSQSSLVSLAEEQRPQPSTEPAAGGDNGNVQARAVDGGAGAKEALTVHDAGGCSDRTGDDCSIHSLAVDADGDTESGALLVDSGGEHEADNDAGDACXXXXXXXXXXNTTYNCGNSGEHGPLIMLHTLETGQKLSGTVVGMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIRVGQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGDKFVVTIISNTDGRIELGYVRKVEPALQVNAGAAASRAQEMHAAXXXXXXXXXXXXXXXXXXXXXXDEYPQDADEDXXXXXXXXXXXXEGDGEFDPDEIDYSLFDDY 1395
            MQQQAAMTAMEAELPQGDGARTGHGSKASAQLAAGTLAGGMAGYSQSSLVSLAEEQRPQPSTEPAAGGDNGNVQARAVDGGAGAKEALTVHDAGGCSDRTGDDCSIHSLAVDADGDTESGALLVDSGGEHEADNDAGDACXXXXXXXXXXNTTYNCGNSGEHGPLIMLHTLETGQKLSGTVVGMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIRVGQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGDKFVVTIISNTDGRIELGYVRKVEPALQVNAGAAASRAQEMHAAXXXXXXXXXXXXXXXXXXXXXXDEYPQDADEDXXXXXXXXXXXXEGDGEFDPDEIDYSLFDDY
Sbjct:    1 MQQQAAMTAMEAELPQGDGARTGHGSKASAQLAAGTLAGGMAGYSQSSLVSLAEEQRPQPSTEPAAGGDNGNVQARAVDGGAGAKEALTVHDAGGCSDRTGDDCSIHSLAVDADGDTESGALLVDSGGEHEADNDAGDACXXXXXXXXXXNTTYNCGNSGEHGPLIMLHTLETGQKLSGTVVGMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIRVGQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGDKFVVTIISNTDGRIELGYVRKVEPALQVNAGAAASRAQEMHAAXXXXXXXXXXXXXXXXXXXXXXDEYPQDADEDXXXXXXXXXXXXEGDGEFDPDEIDYSLFDDY 465          
BLAST of jgi.p|Trimin1|353711 vs. uniprot
Match: A0A0M0JI85_9EUKA (S1 motif domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JI85_9EUKA)

HSP 1 Score: 65.5 bits (158), Expect = 6.210e-8
Identity = 55/180 (30.56%), Postives = 83/180 (46.11%), Query Frame = 1
Query:  502 LHTLETGQKLSGTVVGMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIRVGQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDL--EPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTK 1035
            L  L  G +L+ TV+ + P  A V  GV R      A  ++AP      V+  L    L  G    T LV           G+ +   V +  P  GR  LT  P  +  S+     +   AR+R  + R +  +L  +PG ER+G V +V  YG+++ +GA+RP L+H+SK+    G K
Sbjct:  143 LEDLSIGTQLNATVLSVHPFGAIVEVGVTRA----GAGGTRAP------VDALLPADQLPVGATAATFLVP----------GRTIGVRVLRPSPGSGRLLLTAVPVASTASLETMLEQRALARRRADR-RPSLKELAAQPGIEREGVVVKVASYGVVVNVGARRPGLVHISKLQSGNGRK 301          
BLAST of jgi.p|Trimin1|353711 vs. uniprot
Match: A0A7S4I5E6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I5E6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.900e-7
Identity = 67/234 (28.63%), Postives = 98/234 (41.88%), Query Frame = 1
Query:  496 IMLHTLETGQKLSGTVV-------GMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQ-RVIRV-GQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGDKFVVTIISNTDGRIELGYVR--KVEPALQVN 1164
            + L  LE G KL G  V       G      F  CGVGR  +A           +  +VNG LR         L  +  K++ T+ RV R+ G+ V+ YV K  P  G F ++       E +AA  +E+          R     L+ G+E  GTV RV PYG+++++GA R  LLH+ ++                     K +   I   +G IE G  R  K+  A+ +N
Sbjct:  106 VRLDELELGHKLEGVKVEGSDLLEGKTGPKVFFECGVGRIDSA----------GRWHIVNGMLR---------LGKRGAKKSVTRKRVDRLTGKVVDLYVSKIRPDNGAFEVSTSLEQVQEQLAAEKKESAP-------KRVPVSSLKAGQEVVGTVIRVEPYGVLVDVGANRHGLLHIRRVR--------------------KLMNKFIDGQEGLIEAGLERGAKIRVAVMIN 293          
BLAST of jgi.p|Trimin1|353711 vs. uniprot
Match: A0A7S4I5V8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I5V8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.950e-6
Identity = 59/209 (28.23%), Postives = 90/209 (43.06%), Query Frame = 1
Query:  550 MLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQ-RVIRV-GQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGDKFVVTIISNTDGRIELGYVR--KVEPALQVN 1164
            + P   F  CGVGR  +A           +  +VNG LR         L  +  K++ T+ RV R+ G+ V+ YV K  P  G F ++       E +AA  +E+          R     L+ G+E  GTV RV PYG+++++GA R  LLH+ ++                     K +   I   +G IE G  R  K+  A+ +N
Sbjct:   13 LAPSPVFFECGVGRIDSA----------GRWHIVNGMLR---------LGKRGAKKSVTRKRVDRLTGKVVDLYVSKIRPDNGAFEVSTSLEQVQEQLAAEKKESAP-------KRVPVSSLKAGQEVVGTVIRVEPYGVLVDVGANRHGLLHIRRVR--------------------KLMNKFIDGQEGLIEAGLERGAKIRVAVMIN 175          
BLAST of jgi.p|Trimin1|353711 vs. uniprot
Match: A0A7S2JUH8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUH8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.690e-6
Identity = 63/243 (25.93%), Postives = 107/243 (44.03%), Query Frame = 1
Query:  478 GEHGPLIMLHTLETGQKLSGTVV------GMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIR---VGQEVEAYVKKAWPSEGRFCLTLD-PCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGD-------KFVVTIISNTDGRIELGYVRKVEPAL 1155
            G   P I +  L+ GQ+L  T +      G      F  CGVG         Q  + G K +V+NG LR    +    +++ +VK+  ++   +   V   +  YV +   + G+F ++ + P +  E                 + +     L+ GKE  GTV +V PYG+ +++GA R  LLH+S +AE  G  +    D +   +G+       K  V + SN + R+ L + +KV+  L
Sbjct:   71 GNWKPRIDIRDLKIGQRLFCTKLRNELLNGKTGPKLFYECGVG---------QMDSNG-KWQVINGMLR----LGKAGMKSSVVKKKKSRLKAKADDVSGLIPLYVSRVHIANGKFEVSTEIPDMDKEQ----------------REKIPASSLKHGKELIGTVKKVKPYGVFVDVGASRNGLLHISTVAELFGCYV----DKEKGLIGECGLERGAKIQVAVQSNVNKRLALDFTQKVKDEL 279          
BLAST of jgi.p|Trimin1|353711 vs. uniprot
Match: A0A7S0FP74_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FP74_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.180e-5
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 1
Query:  901 GDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVGDKFVVTIISNTDGRIELGYVRK 1140
            GD++ GK   G V  V PYG  ++IGAK+ ALLH+S+I +   T ++     D+ + GD   V II   DG +    + K
Sbjct:   86 GDIQVGKAYDGKVANVTPYGCFVDIGAKKNALLHISRITQEKVTNIR-----DYVSEGDWLTVHIIGKDDGGLACSMLDK 160          
BLAST of jgi.p|Trimin1|353711 vs. uniprot
Match: A0A7S2RMK8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RMK8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.700e-5
Identity = 56/219 (25.57%), Postives = 94/219 (42.92%), Query Frame = 1
Query:  502 LHTLETGQKLSGTVVGMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGTQRVIRVGQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAVG----DKFVVTIISNTDGRIELGYVRKVE 1146
            L+  +TG KL            F  CG+GR   +           K ++V+G LR  D +     ++ L K+A   +     + V  YV K     GR  +T+DP V         ++  K   + K+   +   L  G E +GTV RV+PYG+ +++GA R  LL +  +A+  G  ++   +      G     +  V + SN   R+ L + + V+
Sbjct:   52 LYDAKTGPKL------------FFECGIGRLDVS----------GKWQMVSGMLRLRD-IWNYKKKSVLRKKAN--KAFDSNRVVTLYVSKVQTDNGRLEVTIDPDV---------KKKNKKNNKGKKKMISASSLHEGYELEGTVVRVHPYGVFVDVGANRLGLLPIQHVAQLYGRYIR--KERGLIEAGLETHARIRVAVSSNQRKRLTLDFTKDVK 234          
BLAST of jgi.p|Trimin1|353711 vs. uniprot
Match: A0A835YW62_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW62_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.180e-5
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 1
Query:  208 NGNVQARAVDGGAGAKEALTVHDAGGCSDRTGDDCSIHSLAVDADGDTESGALLVDSGGEHEADNDAGDAC 420
            N N +  AV GG G  E  TV DAGG  + +GDD SIHSL VDADG++ S  +  +S  E EA++DAG AC
Sbjct:  383 NSNARTGAVKGGGG--ETFTVSDAGGGDNCSGDDYSIHSLDVDADGNSVSEEVAENSCQESEANDDAGGAC 451          
BLAST of jgi.p|Trimin1|353711 vs. uniprot
Match: A0A7S1ZKX6_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZKX6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 9.880e-5
Identity = 62/224 (27.68%), Postives = 94/224 (41.96%), Query Frame = 1
Query:  511 LETGQKLSGTVV-------GMLPHAAFVSCGVGREIAAEDAEQSQAPGAKVKVVNGYLRQADLVEGVALETQLVKQAGT-QRVIRV-GQEVEAYVKKAWPSEGRFCLTLDPCVTPESVAARAREAQKARQRYKQSRAAPGDLEPGKERQGTVTRVYPYGLMLEIGAKRPALLHVSKIAEATGTKLKLGDDNDFAAV---GDKFVVTIISNTDGRIELGYVRKVE 1146
            LE GQKL G  +              F  CGVGR         +   G + K+VNG LR         + T   K++ T +R+ R+ G+ +E YV K     G+F    + C+  E     A    K          +   L+ G E  GTV R+ PYG+ +++GA R  LLH+  +A+    K   G+     A    G +  V ++ N   R+ L +   V+
Sbjct:  115 LEIGQKLYGLKIHGVDLLEAKTGPKIFFECGVGR---------TNKKG-EWKIVNGMLR---------IGTPWSKKSVTAKRIARLSGKMLELYVSKIRVDNGQF----EVCIKQEDALEEASSGMK-------KMVSASTLQVGDELIGTVVRIEPYGVFVDVGANRKGLLHIQTVADLY-KKFIDGEKGLIEAGLERGARIRVAVLKNEKKRLALDFTADVK 307          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353711 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A836CI76_9STRA2.240e-67100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YW62_9STRA4.860e-3166.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJ94_9STRA1.340e-3063.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CIQ7_9STRA4.150e-2060.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7P8_9STRA3.450e-1256.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z6U3_9STRA3.840e-1258.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQW4_9STRA2.040e-860.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|353711 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835ZGC1_9STRA1.260e-285100.00S1 motif domain-containing protein n=1 Tax=Tribone... [more]
A0A0M0JI85_9EUKA6.210e-830.56S1 motif domain-containing protein n=1 Tax=Chrysoc... [more]
A0A7S4I5E6_9STRA4.900e-728.63Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4I5V8_9STRA4.950e-628.23Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2JUH8_9STRA6.690e-625.93Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0FP74_9STRA1.180e-537.50Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2RMK8_9STRA1.700e-525.57Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A835YW62_9STRA3.180e-552.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1ZKX6_9STRA9.880e-527.68Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_179contigContig_179:36548..38295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353711|estExt_Genemark1.C_Ctg_1790005
Hectar predicted targeting categoryother localisation
TranscriptId354033
TrackFilteredModels1
ProteinId353711
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353711gene_15371Tribonema minus UTEX_B_3156 geneContig_179 36548..38295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353711Trimin1|353711|estExt_Genemark1.C_Ctg_1790005Tribonema minus UTEX_B_3156 polypeptideContig_179 36548..38295 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15371_2exon_15371_2Tribonema minus UTEX_B_3156 exonContig_179 36548..36608 -
exon_15371_1exon_15371_1Tribonema minus UTEX_B_3156 exonContig_179 37973..38295 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15371CDS_15371Tribonema minus UTEX_B_3156 CDSContig_179 37973..38295 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15371 ID=mRNA_15371|Name=jgi.p|Trimin1|353711|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_179:36548..38295- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACTCGCCAGCGGCAGTGGCGACAGCAACGCTCCTATTGGGGCTGT
CAACGGAGGGGGTGGGGAGGCGTTTACTGCCGGTGACGCTGGCGGCAACG
ATGCTGACTGCAGCGGCGACGAGTACAGCATCCGCTCGATGAGCGTCGAC
AGCGACGTTGAAAGCATTAGCCAAGAGGTGGATGAAGACGGCTGTCATGC
ACGCAAGGCGAACAACGACGCGGGCGACGCCTGCAGCTGCGGCTTGGACG
CTGGCGATAGCAGGGACGCAGGCAGTGACGCCTCGGACTCCGACAGCAGC
AACCACTGCCAGCCAGTGAGGAACCTGATCTCCGAGCAGGAGTCAGCGGT
GCTGGCTGCAACGCACGCGCTGGCGTCCGGCTAG
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protein sequence of jgi.p|Trimin1|353711

>Trimin1|353711|estExt_Genemark1.C_Ctg_1790005 ID=Trimin1|353711|estExt_Genemark1.C_Ctg_1790005|Name=jgi.p|Trimin1|353711|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp
MRLASGSGDSNAPIGAVNGGGGEAFTAGDAGGNDADCSGDEYSIRSMSVD
SDVESISQEVDEDGCHARKANNDAGDACSCGLDAGDSRDAGSDASDSDSS
NHCQPVRNLISEQESAVLAATHALASG*
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mRNA from alignment at Contig_179:36548..38295-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15371 ID=mRNA_15371|Name=jgi.p|Trimin1|353711|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1748bp|location=Sequence derived from alignment at Contig_179:36548..38295- (Tribonema minus UTEX_B_3156 )
ATGCGACTCGCCAGCGGCAGTGGCGACAGCAACGCTCCTATTGGGGCTGT CAACGGAGGGGGTGGGGAGGCGTTTACTGCCGGTGACGCTGGCGGCAACG ATGCTGACTGCAGCGGCGACGAGTACAGCATCCGCTCGATGAGCGTCGAC AGCGACGTTGAAAGCATTAGCCAAGAGGTGGATGAAGACGGCTGTCATGC ACGCAAGGCGAACAACGACGCGGGCGACGCCTGCAGCTGCGGCTTGGACG CTGGCGATAGCAGGGACGCAGGCAGTGACGCCTCGGACTCCGACAGCAGC AACCACTGCCAGCCAGTGAGGAAGTCCGCACGAATCGCCGTTCTCGCAAA CGGCATTCCTCGCCAACGTGCAGCAGCTGCATCTGGCGCATCGCAAGCAC GCGCTTCCATTGGCAGCGCTGGAGGTGCAGCTGGGACAGGGAAGGCGAAG GGCAAACGAACTGCCAAGCGCCCGTGGCCGAAGCAGCAATGCAAGTTGTG TCAGCACGGCAGGCAGCCTTATTACTGCAAGGACTGTGGTGGTGCGGGGA TCTGCGGGCATGGCAGGCAACGACACACCTGCAAGGACTGTGGGGGTGCG GGGATATGCGAGCACGGCAGGCAACGCAGCAGGTGCAAGGATTGCGGCGG TGCAGGGATATGTGAGCACGGGAGGCAGCGGTACCAGTGCAAGGAGTGTG GTGGCACGGGCATATGCGAGCATGGTAAGCGGCGTTCCTACTGCAAGGTC TGCAGACGGCGCTATGGTAAATGAAGACGGTCGGCACCACGGTGTTAGTG TATACTAGTATGTTGCATTTGCATGACATTGTGCTGCAATCAGCCACTGC CTCGCTGATGTTGTGATGCCTGCTTGTTTTTCCTCATTGGTCTTTACTGC CAGTGACGTCAAGATGTCGCCATCGCCTGTGTTTGCTCAAGACGCATTGC CAGCTGAGCTGCACGAAGTGCCCAACCACATGCAGTTGCCCCATTTCTTG TGCCACCACCGTCTAGCCTACACGTCTTGCAGCCTTTTTTTGCATACACA CTGGTCAAGAGTGTGCTGGTGTTGCGCACTGACATCATGGCGCACAATGC ACAGCCACACGCAGAGTTCACTGCCGGCGAAGCGCCGCCGGCCATAGACA TGTGCGCCCATACAAACTCATGCTGTTTAATCATTTTAATCATGTTGTAC AGGACCTGGTATCAAGATGCATCAGGTAGCACAGGTACCAAGATGCATCG CATTGACGATACCTGGGTGCACAGTCATGGCATCGATGCAGCAGTGCAGC GTCGCTGCCAGTGGGGGCTAGCCGCAGTACTCTACCGCTCTCTGTCCAGA AAACATCCAAGGCAGTGCACAGCCATGATGCAGGTGATGCACCATGGCGA ACCCAAGCTCTTACTCCTGGCGCAACGTCAGAGCTGTGAGTGACAATACT TTAAGCTTAGTCTTACGAGTAGATATTTACTTCAAGTTGAGAGATCCTGT TTTTGGATCTGAGAAGGTGATCGGTAGCCTCTCCAACACTTACCTGCTCG CTCACGAACGTGCTGCTCGTGGCGCCGCACTACTGGCAGGCCAAGTCACG GTGCCGTGACCACTCACAAAAAGCTCGGCGGCGTTCCCTGTGATCACCGT TGCTTGCGCCACTGCTTATCGCGGTTTGGCACGGCAGCCTGATCTCCGAG CAGGAGTCAGCGGTGCTGGCTGCAACGCACGCGCTGGCGTCCGGCTAG
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Coding sequence (CDS) from alignment at Contig_179:36548..38295-

>mRNA_15371 ID=mRNA_15371|Name=jgi.p|Trimin1|353711|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_179:36548..38295- (Tribonema minus UTEX_B_3156 )
ATGCGACTCGCCAGCGGCAGTGGCGACAGCAACGCTCCTATTGGGGCTGT
CAACGGAGGGGGTGGGGAGGCGTTTACTGCCGGTGACGCTGGCGGCAACG
ATGCTGACTGCAGCGGCGACGAGTACAGCATCCGCTCGATGAGCGTCGAC
AGCGACGTTGAAAGCATTAGCCAAGAGGTGGATGAAGACGGCTGTCATGC
ACGCAAGGCGAACAACGACGCGGGCGACGCCTGCAGCTGCGGCTTGGACG
CTGGCGATAGCAGGGACGCAGGCAGTGACGCCTCGGACTCCGACAGCAGC
AACCACTGCCAGCCAGTGAGGAACCTGATCTCCGAGCAGGAGTCAGCGGT
GCTGGCTGCAACGCACGCGCTGGCGTCCGGCTAG
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