mRNA_15380 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: A0A835ZEL5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEL5_9STRA) HSP 1 Score: 272 bits (696), Expect = 1.040e-91 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 Query: 1 MDTVREVRLLGARGPATHAEFVISRFRLLVRVLLTARPSAGTVEFQLDPTAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACERVQAARDREAARXXXXXXXXXXXXXXXXXPANAVVARRRSGGGNAA 486 MDTVREVRLLGARGPATHAEFVISRFRLLVRVLLTARPSAGTVEFQLDPTAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACERVQAARDREAARXXXXXXXXXXXXXXXXXPANAVVARRRSGGGNAA Sbjct: 1 MDTVREVRLLGARGPATHAEFVISRFRLLVRVLLTARPSAGTVEFQLDPTAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACERVQAARDREAARXXXXXXXXXXXXXXXXXPANAVVARRRSGGGNAA 162
BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: A0A835ZLE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE1_9STRA) HSP 1 Score: 158 bits (399), Expect = 1.220e-45 Identity = 82/130 (63.08%), Postives = 98/130 (75.38%), Query Frame = 1 Query: 1 MDTVREVRLLGARGPATHAEFVISRFRLLVRVLLTARPSAGTVEFQLDPT--AAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACERVQAARDREAAR 384 +DTVRE R+LG RG T AEF+ISRF+L VRVLL + P+A TVEF+LDP AAG + +ARG+WYVE P+ R G R+WLVASL V VPGFLVDYAAARALPRA+ W+KP CERVQ + +RE R Sbjct: 76 IDTVREARILGQRGGVTKAEFLISRFKLRVRVLLKSNPAASTVEFELDPDCKAAGKSVLNDARGIWYVERPPDCRPGHCRIWLVASLVVSGLVPGFLVDYAAARALPRASTWLKPTCERVQRSHEREGRR 205
BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: A0A7S4HBJ1_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4HBJ1_GUITH) HSP 1 Score: 102 bits (253), Expect = 2.770e-24 Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 1 Query: 7 TVREVRLL-GARGPAT-HAEFVISRFRLLVRVLLTARPSAGTVEFQLDPTAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACERVQAARDREAA 381 TVRE ++ G R A F +SRFRL V L+ +EFQLD + G+ F EARG W++E PE G +RVWL A +R +P F+VDYAA+RALPRAT+W+KP E + A D+ A+ Sbjct: 11 TVREATIIPGTRSSVRCKARFKLSRFRLEVTADLSLNKFRNMLEFQLDRSGMGSSAFDEARGFWFLEQCPEREEGWTRVWLSAKVRCSPLLPPFIVDYAASRALPRATSWLKPVIEPIAAGLDKTAS 137
BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: A0A6S9HUN1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HUN1_HETAK) HSP 1 Score: 104 bits (259), Expect = 4.180e-24 Identity = 55/129 (42.64%), Postives = 76/129 (58.91%), Query Frame = 1 Query: 1 MDTVREVRLLGARGPATHAEFVISRFRLLVRVLLTARPSAGTVEFQLDPTA-AGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACERVQAARDREAAR 384 + T+R+ + + AT AEF+ISRFR VR ++ P A + F LDP G+FK A G W+ EPAP A +RVW+ ++ V RAVPGF+VD A +ALP+++ WVKP E + R A R Sbjct: 161 ISTIRDAIVFSSSPQATKAEFMISRFRFPVRAIMRYEPEASRLAFDLDPDCKVPPGVFKSAAGFWFAEPAPGREATHTRVWIAGAVEVNRAVPGFVVDLGAQKALPKSSNWVKPVMEAEERRRQAAARR 289
BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: A0A7R9WQE8_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQE8_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 2.410e-23 Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = 1 Query: 7 TVREVRLLGARGPATHAEFVISRFRLLVRVL--LTARPSAGTVEFQLDPTAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACE 348 T RE R G T A FV+S+FRL + + T P +EF LDP+ + K A+G WY E APEGR G +RV+L+ +++ RA+P F+VDYAA RA+PRAT+W++P E Sbjct: 27 TGRETRHYGTPS-VTRAAFVLSKFRLNIAAIHTYTPHPDGDYMEFTLDPSCTNM-VLKGAKGTWYTEEAPEGREGFTRVYLLCEVQISRALPSFIVDYAADRAMPRATSWLRPQVE 140
BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: A0A7S4M0K0_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4M0K0_GUITH) HSP 1 Score: 102 bits (253), Expect = 7.190e-23 Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 1 Query: 7 TVREVRLL-GARGPAT-HAEFVISRFRLLVRVLLTARPSAGTVEFQLDPTAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACERVQAARDREAA 381 TVRE ++ G R A F +SRFRL V L+ +EFQLD + G+ F EARG W++E PE G +RVWL A +R +P F+VDYAA+RALPRAT+W+KP E + A D+ A+ Sbjct: 175 TVREATIIPGTRSSVRCKARFKLSRFRLEVTADLSLNKFRNMLEFQLDRSGMGSSAFDEARGFWFLEQCPEREEGWTRVWLSAKVRCSPLLPPFIVDYAASRALPRATSWLKPVIEPIAAGLDKTAS 301
BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: A0A7S0H7N8_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H7N8_9CRYP) HSP 1 Score: 100 bits (249), Expect = 2.230e-22 Identity = 57/127 (44.88%), Postives = 77/127 (60.63%), Query Frame = 1 Query: 7 TVREVRLL-GARGPAT-HAEFVISRFRLLVRVLLTARPSAGTVEFQLDPTAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACERVQAARDREAA 381 TVRE ++ G R A F +SRFRL V L+ +EFQLD + G+ F EARG W++E PE G +RVWL A +R +P F+VDYAA+RALPRAT+W++P E + A D+ A+ Sbjct: 161 TVREALIIPGTRSSVRCKARFKLSRFRLEVTADLSLNKFRNMLEFQLDRSGMGSSAFDEARGFWFLEQCPEREEGWTRVWLSAKVRCSPLLPPFIVDYAASRALPRATSWLRPVIEPIAAGLDKTAS 287
BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: D7FJT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT4_ECTSI) HSP 1 Score: 101 bits (252), Expect = 2.530e-22 Identity = 56/123 (45.53%), Postives = 78/123 (63.41%), Query Frame = 1 Query: 1 MDTVREVRLL--GARGPATHAEFVISRFRLLVRVLLTARPSAGTVEFQLDP--TAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACERVQ 357 +DTVRE + G + ++SRF+L +RV+++ V+F+LDP T AG + +EA G +YVE P+ R G SRVW++A + V R VPG +VDYAA RALPRA+ W+KP CE Q Sbjct: 297 IDTVRECEVFPQGETADSRKVGVMVSRFKLHIRVVMSLLRERNMVQFELDPDCTKAGRAVLREATGFFYVESPPD-RPGFSRVWMLAKVDVNRFVPGAIVDYAAGRALPRASNWIKPTCEAAQ 418
BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: A0A1E7ESF0_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ESF0_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.180e-21 Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = 1 Query: 7 TVREVRLLGARGPATHAEFVISRFRLLVRVL--LTARPSAGTVEFQLDPTAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACE 348 T RE R G T A F++S+FRL + + T P+ +EF LDP+ + K A+G WY E P+GR G +RV+L+ASL++ RA+P F+VDYAA RA+PRAT W+KP E Sbjct: 291 TGRETRHYGTPS-ITRASFILSKFRLNIAAIHKYTPHPNGDYMEFTLDPSCTNV-VLKGAKGTWYTEENPDGRKGFTRVYLLASLQISRALPKFIVDYAAERAMPRATNWLKPEVE 404
BLAST of jgi.p|Trimin1|178923 vs. uniprot
Match: K0QZX7_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZX7_THAOC) HSP 1 Score: 89.4 bits (220), Expect = 4.410e-20 Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 1 Query: 55 AEFVISRFRLLVRVLLTARP--SAGTVEFQLDPTAAGAGLFKEARGVWYVEPAPEGRAGVSRVWLVASLRVQRAVPGFLVDYAAARALPRATAWVKPACE 348 A+F +S+FRL + L RP + F LDP + L K A+G+WY + PEG+ G +RVWL+ LRV + +P ++VDYAA+RA+PRAT W+KP E Sbjct: 3 AQFSLSKFRLKIAALHKYRPHPKGDYMIFTLDPASRNMAL-KYAKGIWYTQSNPEGKEGYTRVWLLCELRVSKLLPQWIVDYAASRAMPRATTWLKPQTE 101 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178923 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15380 ID=mRNA_15380|Name=jgi.p|Trimin1|178923|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=489bp|location=Sequence derived from alignment at Contig_179:93604..94749- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGACACGGTGCGCGAGGTGCGGCTGCTCGGCGCGCGCGGTCCCGCCACback to top protein sequence of jgi.p|Trimin1|178923 >Trimin1|178923|e_gw1.179.26.1 ID=Trimin1|178923|e_gw1.179.26.1|Name=jgi.p|Trimin1|178923|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=163bp MDTVREVRLLGARGPATHAEFVISRFRLLVRVLLTARPSAGTVEFQLDPTback to top mRNA from alignment at Contig_179:93604..94749- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15380 ID=mRNA_15380|Name=jgi.p|Trimin1|178923|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1146bp|location=Sequence derived from alignment at Contig_179:93604..94749- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_179:93604..94749- >mRNA_15380 ID=mRNA_15380|Name=jgi.p|Trimin1|178923|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=489bp|location=Sequence derived from alignment at Contig_179:93604..94749- (Tribonema minus UTEX_B_3156 )back to top |