Trimin1|353703|estExt_Genemark1.C_Ctg_1780042 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353703
Unique NameTrimin1|353703|estExt_Genemark1.C_Ctg_1780042
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length1401
Homology
BLAST of jgi.p|Trimin1|353703 vs. uniprot
Match: A0A835ZC92_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC92_9STRA)

HSP 1 Score: 2362 bits (6122), Expect = 0.000e+0
Identity = 1400/1400 (100.00%), Postives = 1400/1400 (100.00%), Query Frame = 0
Query:    1 MIRNHADVELPFTSTGAKSRRGSRALDFPSTAKTFQQKNASVAGQDGMRAAAYKLFTRLDYDINGRITAYELERFLCLALEMPLQPTFDITFTGQDLHLELARVDGRLEVQGWGEDMVGYTQSGSPQLCKGLELLKVQGITLPHTKDPTRSLAGVLRGLAPGKPVTVTFAAPPHIVSPADCWLDLRISGSGXXXXXXXXRNVAAVLPTGAYPTREAFASAVQAAARAAAAPTLDDLTCECETTAARXXXXXXXXXXXRVSGAAVFVLSTRVTPFQVAWATGANAERCCQAQFGAGVAAPPADTDADTRHVLRAATVASYMGPNAPVLALVEGAARKLRRLMRRMGADTVQHSALYPSAPGAVTHALRICNCLLRLYTRSPPPADAAAARSLAQNLCAEFAPPGCPPGTAPALDFEAFLPLFAARLSPAALPSLVQLVAGRYADAAEAARREDARAAAAAARVRRGALLAARQARKAAQRAQTAAQLGSGEYGRGKTGLLVRMVARPLARAFARTAPPXXXXLPRAQAVGAMLRVPAAELEQRLAALHETRDVARALRRAQTRRAQFVGRRLAQAQRDSSAREQREKEAAAAAQLRALVSMDLLPSAAEXXXXXXXXXXXXLPEEPDDVIDLGLTAGLALSAGAAPPQCAAEALHPAFTGYVVRRIGALPPWDPATVSPVYFGALSRAHAATRRQSAAAIIRVAKDAVRQGQRRHNAGAQHVWQVFPCAPINKGQVRQDRFAFARAYDRGEVVHPSLFGLSTLRLATAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDERDLRYVRALAPGDACPTCLLRKAGCPRCWEYPAGWAARDFAYEGPAGSSGAAAAAATLELLAGAGSAAPPERLPLHTQLTTESAIRLYRSIEQSFIRFLVKALPCGPVTALACEARWPVHALYAMLRAASAGGAARDAFLFLPTTAGAFALDCAERAETDVSLGVHTALLPLARYNLTANRSTVCLLLSPFFSTVKTEESIRQYLSQELVIKEKYSTATVQHLATCPAHPEQDPVQRALVALLSSRAQLHAALHEDDRHRALQARRELISEAARIRAAVEAEQARCPRAYTPWRAANTEPEGAQPPQHAAAAAPAVVGGPGPVMMLADAPQPDPPPRLPLRRRLLPACAAAPLQRMRVATARDALALTQKIAARCARVSVDWVGTVELAAPITLGVSATLNVTGASAAAVGRAPSAVIGGSGGGSGGAAVRLFELQDGSALTLRDVVLRGASGDIGGAMRAGQGSTVRLTRVVAHNNSATDGGGALYLGLLATAEITNSSFDTNMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIFTHGQLTVRHSSFANNTGLRLRSNDVTTPAACAHPKRMRTARRAA 1400
            MIRNHADVELPFTSTGAKSRRGSRALDFPSTAKTFQQKNASVAGQDGMRAAAYKLFTRLDYDINGRITAYELERFLCLALEMPLQPTFDITFTGQDLHLELARVDGRLEVQGWGEDMVGYTQSGSPQLCKGLELLKVQGITLPHTKDPTRSLAGVLRGLAPGKPVTVTFAAPPHIVSPADCWLDLRISGSGXXXXXXXXRNVAAVLPTGAYPTREAFASAVQAAARAAAAPTLDDLTCECETTAARXXXXXXXXXXXRVSGAAVFVLSTRVTPFQVAWATGANAERCCQAQFGAGVAAPPADTDADTRHVLRAATVASYMGPNAPVLALVEGAARKLRRLMRRMGADTVQHSALYPSAPGAVTHALRICNCLLRLYTRSPPPADAAAARSLAQNLCAEFAPPGCPPGTAPALDFEAFLPLFAARLSPAALPSLVQLVAGRYADAAEAARREDARAAAAAARVRRGALLAARQARKAAQRAQTAAQLGSGEYGRGKTGLLVRMVARPLARAFARTAPPXXXXLPRAQAVGAMLRVPAAELEQRLAALHETRDVARALRRAQTRRAQFVGRRLAQAQRDSSAREQREKEAAAAAQLRALVSMDLLPSAAEXXXXXXXXXXXXLPEEPDDVIDLGLTAGLALSAGAAPPQCAAEALHPAFTGYVVRRIGALPPWDPATVSPVYFGALSRAHAATRRQSAAAIIRVAKDAVRQGQRRHNAGAQHVWQVFPCAPINKGQVRQDRFAFARAYDRGEVVHPSLFGLSTLRLATAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDERDLRYVRALAPGDACPTCLLRKAGCPRCWEYPAGWAARDFAYEGPAGSSGAAAAAATLELLAGAGSAAPPERLPLHTQLTTESAIRLYRSIEQSFIRFLVKALPCGPVTALACEARWPVHALYAMLRAASAGGAARDAFLFLPTTAGAFALDCAERAETDVSLGVHTALLPLARYNLTANRSTVCLLLSPFFSTVKTEESIRQYLSQELVIKEKYSTATVQHLATCPAHPEQDPVQRALVALLSSRAQLHAALHEDDRHRALQARRELISEAARIRAAVEAEQARCPRAYTPWRAANTEPEGAQPPQHAAAAAPAVVGGPGPVMMLADAPQPDPPPRLPLRRRLLPACAAAPLQRMRVATARDALALTQKIAARCARVSVDWVGTVELAAPITLGVSATLNVTGASAAAVGRAPSAVIGGSGGGSGGAAVRLFELQDGSALTLRDVVLRGASGDIGGAMRAGQGSTVRLTRVVAHNNSATDGGGALYLGLLATAEITNSSFDTNMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIFTHGQLTVRHSSFANNTGLRLRSNDVTTPAACAHPKRMRTARRAA
Sbjct:    1 MIRNHADVELPFTSTGAKSRRGSRALDFPSTAKTFQQKNASVAGQDGMRAAAYKLFTRLDYDINGRITAYELERFLCLALEMPLQPTFDITFTGQDLHLELARVDGRLEVQGWGEDMVGYTQSGSPQLCKGLELLKVQGITLPHTKDPTRSLAGVLRGLAPGKPVTVTFAAPPHIVSPADCWLDLRISGSGXXXXXXXXRNVAAVLPTGAYPTREAFASAVQAAARAAAAPTLDDLTCECETTAARXXXXXXXXXXXRVSGAAVFVLSTRVTPFQVAWATGANAERCCQAQFGAGVAAPPADTDADTRHVLRAATVASYMGPNAPVLALVEGAARKLRRLMRRMGADTVQHSALYPSAPGAVTHALRICNCLLRLYTRSPPPADAAAARSLAQNLCAEFAPPGCPPGTAPALDFEAFLPLFAARLSPAALPSLVQLVAGRYADAAEAARREDARAAAAAARVRRGALLAARQARKAAQRAQTAAQLGSGEYGRGKTGLLVRMVARPLARAFARTAPPXXXXLPRAQAVGAMLRVPAAELEQRLAALHETRDVARALRRAQTRRAQFVGRRLAQAQRDSSAREQREKEAAAAAQLRALVSMDLLPSAAEXXXXXXXXXXXXLPEEPDDVIDLGLTAGLALSAGAAPPQCAAEALHPAFTGYVVRRIGALPPWDPATVSPVYFGALSRAHAATRRQSAAAIIRVAKDAVRQGQRRHNAGAQHVWQVFPCAPINKGQVRQDRFAFARAYDRGEVVHPSLFGLSTLRLATAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDERDLRYVRALAPGDACPTCLLRKAGCPRCWEYPAGWAARDFAYEGPAGSSGAAAAAATLELLAGAGSAAPPERLPLHTQLTTESAIRLYRSIEQSFIRFLVKALPCGPVTALACEARWPVHALYAMLRAASAGGAARDAFLFLPTTAGAFALDCAERAETDVSLGVHTALLPLARYNLTANRSTVCLLLSPFFSTVKTEESIRQYLSQELVIKEKYSTATVQHLATCPAHPEQDPVQRALVALLSSRAQLHAALHEDDRHRALQARRELISEAARIRAAVEAEQARCPRAYTPWRAANTEPEGAQPPQHAAAAAPAVVGGPGPVMMLADAPQPDPPPRLPLRRRLLPACAAAPLQRMRVATARDALALTQKIAARCARVSVDWVGTVELAAPITLGVSATLNVTGASAAAVGRAPSAVIGGSGGGSGGAAVRLFELQDGSALTLRDVVLRGASGDIGGAMRAGQGSTVRLTRVVAHNNSATDGGGALYLGLLATAEITNSSFDTNMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIFTHGQLTVRHSSFANNTGLRLRSNDVTTPAACAHPKRMRTARRAA 1400          
BLAST of jgi.p|Trimin1|353703 vs. uniprot
Match: A0A836CJI1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI1_9STRA)

HSP 1 Score: 180 bits (456), Expect = 6.270e-42
Identity = 148/229 (64.63%), Postives = 164/229 (71.62%), Query Frame = 0
Query: 1150 DPPPRLPLRRRL-LPACAAA--PLQRMRVATARDALALTQKIAARCARVSVDWVGTVELAAPITLGVSATLNVTGASAAAVGRAPSAVIGGSGGGSGGAAVRLFELQDGSALTLRDVVLRGASGDIGGAMRAGQGSTVRLTRVVAHNNSATDGGGALYLGLLATAEITNSSFDTNMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIFTHGQLTVRHSSFANNTGLR 1375
            DP P  PLR+   LP CA+   P++R+RVATA DA ALT+ IAA CARV VDW GTVEL  PI LG  ATL V GASAA VG APS            AAVRLFEL++ SAL L+DVVLRG S D GGA+ AGQ S V LTRVVAH+N+ATDGGGALYL  L+TAEITN SFD N  XXXXXXXXXXXXXXXXXXXXXX         I+THGQL VR   FANNTG++
Sbjct:   24 DPHPHRPLRKLAPLPPCASPLPPVRRLRVATADDAAALTRAIAAPCARVYVDWFGTVELTEPIRLGARATLTVNGASAA-VGGAPSXXXXXXXX-XXXAAVRLFELRNNSALRLQDVVLRGGSADSGGAVWAGQDSKVWLTRVVAHSNNATDGGGALYLSPLSTAEITNCSFDFNXXXXXXXXXXXXXXXXXXXXXXXXNGTSQSAGAIYTHGQLIVRQGRFANNTGVQ 250          
BLAST of jgi.p|Trimin1|353703 vs. uniprot
Match: A0A7S2MF12_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MF12_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.320e-17
Identity = 72/250 (28.80%), Postives = 117/250 (46.80%), Query Frame = 0
Query:  826 LAPGDACPTCLLRKAGCPRCWEYPAGWAARDFAYEGPAGSSGAAAAAATLELLAGAGSAAPPERLPLHTQLTTESAIRLYRSIEQSFIRFLVKALPCGPVTALACEARWPVHALYAMLRAASAGGAARDAFLFLPTTAGAFALDCAERAETDVSLGVHTALLPLARYNLTANRSTVCLLLSPFFSTVKTEESIRQYLSQELVIKEKYSTATVQHL-ATCPAHPEQDPVQRALVALLSSRAQLHAALHEDD 1074
            L P D CP CL+RK GCP CWE+P G+A  D+ ++G  G           +L+          +  +HT LTT  A++ +R I  S+   LVK +P GPV  L       V  L+ + R+ S  G    A LF+PT  G + LD  +  E++++L ++TA + L RY        V +LL          ++ +  + +++ +  +  T  + HL          D +Q +L+ L   +  L   + +DD
Sbjct:  137 LRPEDICPICLVRKPGCPFCWEFPKGFAPVDYEHKGKKGEH---------DLV--------DTKPKIHTDLTTVGALQTFRHINSSYTNVLVKTIPAGPVIELRVLPTDNVGYLHHLFRSKSEFGMHDQARLFIPTVNGIYCLDNDQVPESELTLALYTADIALQRYGFMGEAFPV-VLLHAMGEIGLFHDTFQHLIERQVHLPTQPKTDIIHHLEGLVEITIGNDALQESLLQLFEKQLTLDRKVAQDD 368          
BLAST of jgi.p|Trimin1|353703 vs. uniprot
Match: A0A7S2RVH0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVH0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.670e-11
Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = 0
Query:  892 LHTQLTTESAIRLYRSIEQSFIRFLVKALPCGPVTALACEARWPVHALYAMLRAASAGGA-ARDAFLFLPTTAGAFALDCAERAETDVSLGVHTALLPLARYNLTANRSTVCLLLSPF 1008
            LHT LTT +AI  +R I  SF+ FL+K +P GPVT +  ++ W V  LY +  ++S+    +  + LFLPT AG F L   +  ET+  L    AL+ L+ Y+++   S V LL  P+
Sbjct:  219 LHTDLTTPAAIAYHRRIHNSFVTFLIKTVPAGPVTRVVLDSSWTVEQLYELFFSSSSVDLLSPTSTLFLPTCAGIFELVNVDEEETETQLENKRALMQLSEYSISTPGSLVALLHFPW 336          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353703 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZC92_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJI1_9STRA6.270e-4264.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2MF12_9STRA1.320e-1728.80Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RVH0_9STRA4.670e-1138.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 536..556
NoneNo IPR availableCOILSCoilCoilcoord: 1082..1102
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 1215..1374

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_178contigContig_178:241205..256642 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353703mRNA_14291Tribonema minus UTEX_B_3156 mRNAContig_178 241205..256642 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353703|estExt_Genemark1.C_Ctg_1780042 ID=Trimin1|353703|estExt_Genemark1.C_Ctg_1780042|Name=jgi.p|Trimin1|353703|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1401bp
MIRNHADVELPFTSTGAKSRRGSRALDFPSTAKTFQQKNASVAGQDGMRA
AAYKLFTRLDYDINGRITAYELERFLCLALEMPLQPTFDITFTGQDLHLE
LARVDGRLEVQGWGEDMVGYTQSGSPQLCKGLELLKVQGITLPHTKDPTR
SLAGVLRGLAPGKPVTVTFAAPPHIVSPADCWLDLRISGSGGSGGAGGAR
NVAAVLPTGAYPTREAFASAVQAAARAAAAPTLDDLTCECETTAARASSG
GGGSGGGRVSGAAVFVLSTRVTPFQVAWATGANAERCCQAQFGAGVAAPP
ADTDADTRHVLRAATVASYMGPNAPVLALVEGAARKLRRLMRRMGADTVQ
HSALYPSAPGAVTHALRICNCLLRLYTRSPPPADAAAARSLAQNLCAEFA
PPGCPPGTAPALDFEAFLPLFAARLSPAALPSLVQLVAGRYADAAEAARR
EDARAAAAAARVRRGALLAARQARKAAQRAQTAAQLGSGEYGRGKTGLLV
RMVARPLARAFARTAPPPPPPLPRAQAVGAMLRVPAAELEQRLAALHETR
DVARALRRAQTRRAQFVGRRLAQAQRDSSAREQREKEAAAAAQLRALVSM
DLLPSAAERAAAAAAAAAAALPEEPDDVIDLGLTAGLALSAGAAPPQCAA
EALHPAFTGYVVRRIGALPPWDPATVSPVYFGALSRAHAATRRQSAAAII
RVAKDAVRQGQRRHNAGAQHVWQVFPCAPINKGQVRQDRFAFARAYDRGE
VVHPSLFGLSTLRLATAGAAAAKAAPPLPPPSCVTPVMAGYQLRRAPPAA
LLLAAAGGATAAAATDERDLRYVRALAPGDACPTCLLRKAGCPRCWEYPA
GWAARDFAYEGPAGSSGAAAAAATLELLAGAGSAAPPERLPLHTQLTTES
AIRLYRSIEQSFIRFLVKALPCGPVTALACEARWPVHALYAMLRAASAGG
AARDAFLFLPTTAGAFALDCAERAETDVSLGVHTALLPLARYNLTANRST
VCLLLSPFFSTVKTEESIRQYLSQELVIKEKYSTATVQHLATCPAHPEQD
PVQRALVALLSSRAQLHAALHEDDRHRALQARRELISEAARIRAAVEAEQ
ARCPRAYTPWRAANTEPEGAQPPQHAAAAAPAVVGGPGPVMMLADAPQPD
PPPRLPLRRRLLPACAAAPLQRMRVATARDALALTQKIAARCARVSVDWV
GTVELAAPITLGVSATLNVTGASAAAVGRAPSAVIGGSGGGSGGAAVRLF
ELQDGSALTLRDVVLRGASGDIGGAMRAGQGSTVRLTRVVAHNNSATDGG
GALYLGLLATAEITNSSFDTNMADRGAAVYVDVGARATIVDSSFKNGRGG
SGGAIFTHGQLTVRHSSFANNTGLRLRSNDVTTPAACAHPKRMRTARRAA
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence