mRNA_14289 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353701
Unique NamemRNA_14289
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353701 vs. uniprot
Match: A0A835Z4S1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4S1_9STRA)

HSP 1 Score: 413 bits (1061), Expect = 5.560e-145
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 1 
Query:    1 MPPHRAPPLSGPPRDAATCVLSITFSQQLQLSARDVTGAFRKKARAAERERWARIDHGDAAVAHETARGQEAATVALGLWRDGSETAMSACARNFSQALADALAARGAHRVSMWDERFSSVEAQSRLARHRGNHDVDAVAACAILEHYFEEGGEGAEVVAASANVSECVDKYGGEAAAAVQPENRLGEMLRMRGEARREGGXXXXXXXXXXXXXXTRAKPKRQPKKRQRGQSLL 702
            MPPHRAPPLSGPPRDAATCVLSITFSQQLQLSARDVTGAFRKKARAAERERWARIDHGDAAVAHETARGQEAATVALGLWRDGSETAMSACARNFSQALADALAARGAHRVSMWDERFSSVEAQSRLARHRGNHDVDAVAACAILEHYFEEGGEGAEVVAASANVSECVDKYGGEAAAAVQPENRLGEMLRMRGEARREGGXXXXXXXXXXXXXXTRAKPKRQPKKRQRGQSLL
Sbjct:    1 MPPHRAPPLSGPPRDAATCVLSITFSQQLQLSARDVTGAFRKKARAAERERWARIDHGDAAVAHETARGQEAATVALGLWRDGSETAMSACARNFSQALADALAARGAHRVSMWDERFSSVEAQSRLARHRGNHDVDAVAACAILEHYFEEGGEGAEVVAASANVSECVDKYGGEAAAAVQPENRLGEMLRMRGEARREGGXXXXXXXXXXXXXXTRAKPKRQPKKRQRGQSLL 234
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BLAST of jgi.p|Trimin1|353701 vs. uniprot
Match: A0A7S2V363_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V363_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.120e-9
Identity = 43/94 (45.74%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:  211 EAATVALGLWRDGSETAMSACARNFSQALADALAARGAHRVSMWDERFSSVEAQSRLARHRGNHD-----VDAVAACAILEHYFEEGGEGAEVV 477
            +A  V + L R G ET  S   RNFSQ LAD ++ +    V +WDE F+S +A++RL R  G  D     +DAV+AC +LE YF++GG GAE+V
Sbjct:  175 QAVVVGVPLDRVGGETNQSLINRNFSQDLADLISPQVP--VYLWDEAFTSYDAEARL-RANGQGDTVGFQLDAVSACVLLEDYFDQGGFGAELV 265
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BLAST of jgi.p|Trimin1|353701 vs. uniprot
Match: A0A8J2T1I1_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1I1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 8.100e-8
Identity = 45/102 (44.12%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:  175 DAAVAH--ETARGQEAATVALGL--WRDGSETAMSACARNFSQALADALAARGAHRVSMWDERFSSVEAQSRLARHRGNHDVDAVAACAILEHYFEEGGEGA 468
            DA VA   + AR +  A++ +GL   +DG+E    A  R F+ ALA   AA  A  + +WDERFSS EA++ LA HR    +DAVAAC IL+ +F    +GA
Sbjct:  111 DAVVARLLQIARRERIASIVVGLPLEKDGAEGLQCAATRRFADALA---AAAPATPLVLWDERFSSREAEALLA-HRPGAALDAVAACVILDDFFASADDGA 208
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BLAST of jgi.p|Trimin1|353701 vs. uniprot
Match: A0A7Y3J5L8_9GAMM (Putative pre-16S rRNA nuclease n=1 Tax=Steroidobacteraceae bacterium TaxID=2689616 RepID=A0A7Y3J5L8_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 5.570e-7
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:  244 DGSETAMSACARNFSQALADALAARGAHRVSMWDERFSSVEAQSRLARHRGNH---------DVDAVAACAILEHYFEEGG 459
            DGSE+ ++  AR F+  LAD    R   RV + DER+SS+EA +RL + R N          DVDA AAC I+E +F+E G
Sbjct:   74 DGSESVLAREARAFAAELAD----RSRVRVHLIDERYSSIEAAARLRQSRQNGVRRRRVAKGDVDAAAACVIMERWFDEAG 150
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BLAST of jgi.p|Trimin1|353701 vs. uniprot
Match: A0A0M9UCW6_9CHLR (Putative pre-16S rRNA nuclease n=2 Tax=Ardenticatena maritima TaxID=872965 RepID=A0A0M9UCW6_9CHLR)

HSP 1 Score: 57.4 bits (137), Expect = 6.730e-7
Identity = 42/102 (41.18%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:  193 ETARGQEAATVALGLW--RDGSETAMSACARNFSQALADALAARGAHRVSMWDERFSSVEAQSRL-----ARHRGNHDVDAVAACAILEHYFEEGGEGAEVV 477
            E AR ++AA + +GL    DGSE   +A  R F    A+ LAA+    V +WDER++S +AQ ++      +      +DAVAA  +LEHYFE  G GAE V
Sbjct:   38 ELARAEQAAKIIVGLPLNTDGSEGEQAAQCRAF----AEVLAAQTDIPVYLWDERYTSKDAQQQMIAAGTTQKARREKLDAVAAAVMLEHYFEHQGVGAERV 135
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BLAST of jgi.p|Trimin1|353701 vs. uniprot
Match: A0A7S3Q5C8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q5C8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.890e-5
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 1 
Query:  199 ARGQEAATVALGL--WRDGSETAMSACARNFSQALADALAAR---GAHRVSMWDERFSSVEAQSRL--ARHRGN--HDVDAVAACAILEHYFEEGGEGAE 471
            A  +EA  + +GL   ++G+E   +   RNF+  L  A  A+    A  + MWDER++S EA +R+  A  R N   ++DA AAC ILE+Y+++ G GAE
Sbjct:  196 ATAEEATQIVVGLPFHKNGTEAEQTIITRNFTHHLFYATYAQFGPDAMPIYMWDERYTSKEAAARIRAANPRANLYKELDAEAACIILEYYYKDDGLGAE 295
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BLAST of jgi.p|Trimin1|353701 vs. uniprot
Match: B8CG17_THAPS (YqgFc domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG17_THAPS)

HSP 1 Score: 54.3 bits (129), Expect = 5.570e-5
Identity = 40/111 (36.04%), Postives = 60/111 (54.05%), Query Frame = 1 
Query:  229 LGLWRDGSETAMSACARNFSQALADALAARGAHR--VSMWDERFSSVEAQSRL-----ARHRG-------NHDVDAVAACAILEHYFEEGGEGAEVVAASANVSE-CVDKY 516
            L L ++GS +  S   R F   L   +  R  +   V++WDER++S EA SR+     AR+R        N  +D  AAC ILEHY++  G+ AEV+A + +V   C++ Y
Sbjct:  254 LPLHKNGSISEQSLITRQFGYELLQTVRTRMGYNANVTLWDERYTSKEAASRIVGEAIARNRRIPSASDLNGALDDEAACIILEHYYQALGQDAEVLALNIDVERTCLEMY 364
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BLAST of jgi.p|Trimin1|353701 vs. uniprot
Match: A0A2G6EDE3_9GAMM (Putative pre-16S rRNA nuclease n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6EDE3_9GAMM)

HSP 1 Score: 51.6 bits (122), Expect = 9.440e-5
Identity = 40/85 (47.06%), Postives = 47/85 (55.29%), Query Frame = 1 
Query:  223 VALGLWRDGSETAMSACARNFSQALADALAARGAHRVSMWDERFSSVEAQSRLA--RHRGNH-------DVDAVAACAILEHYFE 450
            V L L RDGSE+ + A  R F++ L      R    V   DERFSSVEAQ R+A  R RG         DVDAVAA  +LE YF+
Sbjct:   57 VGLPLERDGSESPLCAHVRGFAKRLRS----RFELPVVEVDERFSSVEAQHRIAAMRRRGQKTRRATHADVDAVAAALLLERYFD 137
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353701 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835Z4S1_9STRA5.560e-145100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V363_9STRA4.120e-945.74Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A8J2T1I1_9STRA8.100e-844.12Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7Y3J5L8_9GAMM5.570e-744.44Putative pre-16S rRNA nuclease n=1 Tax=Steroidobac... [more]
A0A0M9UCW6_9CHLR6.730e-741.18Putative pre-16S rRNA nuclease n=2 Tax=Ardenticate... [more]
A0A7S3Q5C8_9STRA3.890e-539.00Hypothetical protein (Fragment) n=2 Tax=Chaetocero... [more]
B8CG17_THAPS5.570e-536.04YqgFc domain-containing protein (Fragment) n=1 Tax... [more]
A0A2G6EDE3_9GAMM9.440e-547.06Putative pre-16S rRNA nuclease n=1 Tax=Gammaproteo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_178contigContig_178:233366..234617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353701|estExt_Genemark1.C_Ctg_1780040
BRITEko00000,ko01000
KEGG koko:K07447
DescriptionHolliday junction resolvase
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2E4SD@1|root,2SBMG@2759|Eukaryota
Evalue3.97e-08
Seed ortholog2880.D8LRK7
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionYqgF/RNase H-like domain
Ec32 orthologEc-12_000160.1
TranscriptId354023
TrackFilteredModels1
ProteinId353701
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353701gene_14289Tribonema minus UTEX_B_3156 geneContig_178 233366..234617 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14289_1exon_14289_1Tribonema minus UTEX_B_3156 exonContig_178 233366..233607 +
exon_14289_2exon_14289_2Tribonema minus UTEX_B_3156 exonContig_178 234155..234617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14289CDS_14289Tribonema minus UTEX_B_3156 CDSContig_178 233366..233607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353701Trimin1|353701|estExt_Genemark1.C_Ctg_1780040Tribonema minus UTEX_B_3156 polypeptideContig_178 233366..234617 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14289 ID=mRNA_14289|Name=jgi.p|Trimin1|353701|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=705bp|location=Sequence derived from alignment at Contig_178:233366..234617+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCCCACCGCGCCCCTCCCCTGAGCGGCCCTCCGAGGGACGCCGC
CACTTGTGTGCTTTCTATTACTTTCAGCCAGCAACTGCAACTTTCGGCGA
GGGATGTCACCGGAGCGTTCAGGAAGAAGGCACGGGCGGCAGAGCGCGAG
AGGTGGGCGCGCATTGATCATGGGGATGCTGCAGTCGCACACGAGACGGC
GCGCGGGCAAGAGGCCGCCACCGTGGCGCTCGGTCTGTGGAGGGACGGCA
GCGAGACGGCCATGAGCGCGTGCGCGCGCAACTTCTCGCAGGCGCTCGCG
GACGCGCTCGCGGCGCGCGGCGCACATCGCGTCTCCATGTGGGATGAGCG
CTTCTCGAGCGTGGAGGCGCAGTCGCGCCTGGCGCGCCACCGCGGCAACC
ACGACGTCGACGCCGTCGCCGCGTGCGCGATCCTCGAGCACTACTTCGAG
GAGGGCGGGGAGGGCGCGGAGGTCGTGGCGGCCAGCGCGAATGTGTCTGA
GTGCGTTGACAAATACGGTGGTGAAGCAGCGGCGGCGGTGCAGCCGGAGA
ATCGGCTGGGGGAGATGCTGCGGATGCGGGGGGAGGCGCGGAGAGAGGGG
GGGGGGCGCGATGCCGGGGGTGGCGGCGGCGGCGGCGGCGGCGGCACTCG
AGCAAAGCCGAAGCGCCAGCCGAAGAAGCGGCAACGAGGGCAAAGCTTGC
TGTAA
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protein sequence of jgi.p|Trimin1|353701

>Trimin1|353701|estExt_Genemark1.C_Ctg_1780040 ID=Trimin1|353701|estExt_Genemark1.C_Ctg_1780040|Name=jgi.p|Trimin1|353701|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=235bp
MPPHRAPPLSGPPRDAATCVLSITFSQQLQLSARDVTGAFRKKARAAERE
RWARIDHGDAAVAHETARGQEAATVALGLWRDGSETAMSACARNFSQALA
DALAARGAHRVSMWDERFSSVEAQSRLARHRGNHDVDAVAACAILEHYFE
EGGEGAEVVAASANVSECVDKYGGEAAAAVQPENRLGEMLRMRGEARREG
GGRDAGGGGGGGGGGTRAKPKRQPKKRQRGQSLL*
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mRNA from alignment at Contig_178:233366..234617+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14289 ID=mRNA_14289|Name=jgi.p|Trimin1|353701|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1252bp|location=Sequence derived from alignment at Contig_178:233366..234617+ (Tribonema minus UTEX_B_3156 )
ATGCCGCCCCACCGCGCCCCTCCCCTGAGCGGCCCTCCGAGGGACGCCGC
CACTTGTGTGCTTTCTATTACTTTCAGCCAGCAACTGCAACTTTCGGCGA
GGGATGTCACCGGAGCGTTCAGGAAGAAGGCACGGGCGGCAGAGCGCGAG
AGGTGGGCGCGCATTGATCATGGGGATGCTGCAGTCGCACACGAGACGGC
GCGCGGGCAAGAGGCCGCCACCGTGGCGCTCGGTCTGTGGAGGTGCCGCT
GCCTTCGGGAGCATCGTGCTGATGCTGCAGCAAACAGCGGTGTCGTTCAT
GGTTTCTACAGCTCCCATCTCGGCTCCATGGTCTCAGATATACATGCTGC
GGCCCCTGCAGCAGCAGGAAGGGAGTTCCTTACAAGGAATCAGGACGTTG
GCGGTGGACTTCGGCACGAAGCGGCTGGGAATTGCAGTTGGCCTGGGCAT
TGCCCCACGGCCTCTGGCGGTGATACCAAACAAGGGCAATCACACGGTCG
TGGCGCAAGAAATCATCAAATTTGGACGCGGAGAGGGTGTCGCAAATTAC
ATTGTGGGGTTGCCACTTGACAGGTGAGACAGACGGTTTCAGAGGCCTGC
ATCTCCCGTCTTGCGTCGGATCCTCTCAATTCAAGATCGGGGATGCATGC
GGGCTACAGGTACACAACCACAGCCAGCCCACGCGCATTCCCTCGCAGAC
ATCCAGCCGCAGCTGACGCAAATCCAAGCTTGCGCACAACAAGCCCCCCC
CCCCCCCCCCGCCCCGCCCCCCCGCCCCCGCGCGCGCAGGGACGGCAGCG
AGACGGCCATGAGCGCGTGCGCGCGCAACTTCTCGCAGGCGCTCGCGGAC
GCGCTCGCGGCGCGCGGCGCACATCGCGTCTCCATGTGGGATGAGCGCTT
CTCGAGCGTGGAGGCGCAGTCGCGCCTGGCGCGCCACCGCGGCAACCACG
ACGTCGACGCCGTCGCCGCGTGCGCGATCCTCGAGCACTACTTCGAGGAG
GGCGGGGAGGGCGCGGAGGTCGTGGCGGCCAGCGCGAATGTGTCTGAGTG
CGTTGACAAATACGGTGGTGAAGCAGCGGCGGCGGTGCAGCCGGAGAATC
GGCTGGGGGAGATGCTGCGGATGCGGGGGGAGGCGCGGAGAGAGGGGGGG
GGGCGCGATGCCGGGGGTGGCGGCGGCGGCGGCGGCGGCGGCACTCGAGC
AAAGCCGAAGCGCCAGCCGAAGAAGCGGCAACGAGGGCAAAGCTTGCTGT
AA
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Coding sequence (CDS) from alignment at Contig_178:233366..234617+

>mRNA_14289 ID=mRNA_14289|Name=jgi.p|Trimin1|353701|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=705bp|location=Sequence derived from alignment at Contig_178:233366..234617+ (Tribonema minus UTEX_B_3156 )
ATGCCGCCCCACCGCGCCCCTCCCCTGAGCGGCCCTCCGAGGGACGCCGC
CACTTGTGTGCTTTCTATTACTTTCAGCCAGCAACTGCAACTTTCGGCGA
GGGATGTCACCGGAGCGTTCAGGAAGAAGGCACGGGCGGCAGAGCGCGAG
AGGTGGGCGCGCATTGATCATGGGGATGCTGCAGTCGCACACGAGACGGC
GCGCGGGCAAGAGGCCGCCACCGTGGCGCTCGGTCTGTGGAGGGACGGCA
GCGAGACGGCCATGAGCGCGTGCGCGCGCAACTTCTCGCAGGCGCTCGCG
GACGCGCTCGCGGCGCGCGGCGCACATCGCGTCTCCATGTGGGATGAGCG
CTTCTCGAGCGTGGAGGCGCAGTCGCGCCTGGCGCGCCACCGCGGCAACC
ACGACGTCGACGCCGTCGCCGCGTGCGCGATCCTCGAGCACTACTTCGAG
GAGGGCGGGGAGGGCGCGGAGGTCGTGGCGGCCAGCGCGAATGTGTCTGA
GTGCGTTGACAAATACGGTGGTGAAGCAGCGGCGGCGGTGCAGCCGGAGA
ATCGGCTGGGGGAGATGCTGCGGATGCGGGGGGAGGCGCGGAGAGAGGGG
GGGGGGCGCGATGCCGGGGGTGGCGGCGGCGGCGGCGGCGGCGGCACTCG
AGCAAAGCCGAAGCGCCAGCCGAAGAAGCGGCAACGAGGGCAAAGCTTGC
TGTAA
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