mRNA_14285 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353698
Unique NamemRNA_14285
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353698 vs. uniprot
Match: A0A835Z6Y8_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Y8_9STRA)

HSP 1 Score: 241 bits (615), Expect = 1.850e-80
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 
Query:    1 MNFLLLDPKNFIVAVNPEEDAGDQTVYVREEARGRGVGSAIVAALLRQHAVRHGGAALPRTFLLTLADTTRFYERLGFRAADAAALPLTMRLELLAGSAIQALLGGRLVAMQFGGADGDGSSSNGAPT 384
            MNFLLLDPKNFIVAVNPEEDAGDQTVYVREEARGRGVGSAIVAALLRQHAVRHGGAALPRTFLLTLADTTRFYERLGFRAADAAALPLTMRLELLAGSAIQALLGGRLVAMQFGGADGDGSSSNGAPT
Sbjct:    1 MNFLLLDPKNFIVAVNPEEDAGDQTVYVREEARGRGVGSAIVAALLRQHAVRHGGAALPRTFLLTLADTTRFYERLGFRAADAAALPLTMRLELLAGSAIQALLGGRLVAMQFGGADGDGSSSNGAPT 128
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BLAST of jgi.p|Trimin1|353698 vs. uniprot
Match: A0A7S0Y3J5_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y3J5_HEMAN)

HSP 1 Score: 62.8 bits (151), Expect = 3.500e-9
Identity = 43/127 (33.86%), Postives = 65/127 (51.18%), Query Frame = 1 
Query:    1 MNFLLLDPKNFIVAVNPEEDAG-------DQT-----VYVREEARGRGVGSAIVAALLRQHAVRHG--GAALPRTFLLTLADTTRFYERLGFRAADAAALPLTMRLELLAGSAIQALLGGRLVAMQF 339
            MN L L P+NF++A    E  G       D++     + V+EEARG G+G+AIV  LL  H  +    G  +P    LTL +T  FY R+G+     +  P+ M+ E   G  + AL G  L+ +++
Sbjct:  109 MNPLFLSPENFVIAEQDGEIFGIGQIRPIDKSWELASLVVKEEARGNGIGTAIVQELLELHQKKFEAEGKGVPPVLALTLKETKPFYTRMGWLEQPMSMAPMKMQAEASVGGVVAALTGNSLICVKY 235
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BLAST of jgi.p|Trimin1|353698 vs. uniprot
Match: A0A7S0HRR8_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HRR8_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 8.620e-9
Identity = 49/126 (38.89%), Postives = 63/126 (50.00%), Query Frame = 1 
Query:    1 MNFLLLDPKNFIVAVNPEEDAGDQ-------------------TVYVREEARGRGVGSAIVAALLRQHAVRHGGAALPRTFLLTLADTTRFYERLGFRAADAAALPLTMRLELLAGSAIQALLGGR 321
            MN L L P+ F+VA     DA D+                   ++ V  EARGRG+GSA+V  LL     R  G  +   +LLTL +T RFYE LGF      A PLTMRLE   GS +  ++ G+
Sbjct:   40 MNPLFLQPERFVVA----SDAADEQRVLGFGQLRPLSGAWELASLVVEPEARGRGLGSALVRRLL----ARVEGEEV---WLLTLENTRRFYEPLGFVETPPGAAPLTMRLEQAVGSVVAGVVAGQ 154
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BLAST of jgi.p|Trimin1|353698 vs. uniprot
Match: A0A7S2DZ93_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DZ93_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 1.000e-6
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   73 TVYVREEARGRGVGSAIVAALLRQHAVRHGGAALPRTFLLTLADTTRFYERLGFRAADAAALPLTMRLELLAG 291
            +++V E  RGRGVGSA+VA LLR+H ++ GG      +LLTL  T+R+YE+ GF        P  M  E+ AG
Sbjct:   32 SIFVEEPWRGRGVGSALVAKLLRRH-IQCGGRPAD-IYLLTLDSTSRWYEQAGFTLVSKEYAPSQMAFEIAAG 102
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353698 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835Z6Y8_9STRA1.850e-80100.00N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S0Y3J5_HEMAN3.500e-933.86Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0HRR8_9EUKA8.620e-938.89Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S2DZ93_9EUKA1.000e-645.21Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_178contigContig_178:214370..215028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353698|estExt_Genemark1.C_Ctg_1780037
DescriptionAcetyltransferase (GNAT) domain
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2E3GZ@1|root,2SAJB@2759|Eukaryota
Evalue7.74e-13
Seed ortholog55529.EKX33571
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSecreted acetyltransferase (GNAT) domain protein
Ec32 orthologEc-24_000840.1
TranscriptId354020
TrackFilteredModels1
ProteinId353698
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353698gene_14285Tribonema minus UTEX_B_3156 geneContig_178 214370..215028 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14285_1exon_14285_1Tribonema minus UTEX_B_3156 exonContig_178 214370..214443 +
exon_14285_2exon_14285_2Tribonema minus UTEX_B_3156 exonContig_178 214716..215028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14285CDS_14285Tribonema minus UTEX_B_3156 CDSContig_178 214370..214443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353698Trimin1|353698|estExt_Genemark1.C_Ctg_1780037Tribonema minus UTEX_B_3156 polypeptideContig_178 214370..215028 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14285 ID=mRNA_14285|Name=jgi.p|Trimin1|353698|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=387bp|location=Sequence derived from alignment at Contig_178:214370..215028+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTTCCTGCTGCTAGACCCGAAAAACTTCATCGTGGCGGTAAATCC
CGAGGAAGACGCCGGTGACCAGACCGTCTACGTGCGCGAGGAGGCGCGCG
GCAGGGGCGTCGGCTCGGCCATCGTCGCCGCGCTGCTGCGCCAGCACGCC
GTGCGGCACGGCGGCGCCGCGCTCCCGCGCACCTTCCTGCTCACGCTCGC
TGACACGACGCGCTTCTACGAGAGGCTGGGCTTCCGCGCCGCGGACGCGG
CGGCGCTGCCGCTCACCATGCGCCTCGAGCTGCTGGCGGGCAGCGCGATA
CAGGCGCTGCTCGGCGGCCGGCTCGTGGCGATGCAGTTCGGCGGCGCCGA
CGGCGACGGCAGCAGCAGCAACGGCGCGCCCACATGA
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protein sequence of jgi.p|Trimin1|353698

>Trimin1|353698|estExt_Genemark1.C_Ctg_1780037 ID=Trimin1|353698|estExt_Genemark1.C_Ctg_1780037|Name=jgi.p|Trimin1|353698|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=129bp
MNFLLLDPKNFIVAVNPEEDAGDQTVYVREEARGRGVGSAIVAALLRQHA
VRHGGAALPRTFLLTLADTTRFYERLGFRAADAAALPLTMRLELLAGSAI
QALLGGRLVAMQFGGADGDGSSSNGAPT*
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mRNA from alignment at Contig_178:214370..215028+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14285 ID=mRNA_14285|Name=jgi.p|Trimin1|353698|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=659bp|location=Sequence derived from alignment at Contig_178:214370..215028+ (Tribonema minus UTEX_B_3156 )
ATGAATTTCCTGCTGCTAGACCCGAAAAACTTCATCGTGGCGGTAAATCC
CGAGGAAGACGCCGGTGACCAGACGTGCAGCGCAGATCCTGTTGGATTTG
GACAGATACGGCCATTGAACCAACGCGATTTCGAGCTCGCTAGGTGTGAC
TGAACCTGAGTAAGCTGCAATTGCATTGCCCACATGGACACACTTTAGCA
CCACACTGTACAGCAACTACAGAGCCAGCTGCCGCGCATCACCAGCGCTA
GAGCCCCTCTTCCTGCGCTTCACAATCCTGTGTGGTTCATTCATCGACGG
CCGCTCATCGCGAATGTGACCCCGCGCCCGCGCTGCCGCCGCGCAGCGTC
TACGTGCGCGAGGAGGCGCGCGGCAGGGGCGTCGGCTCGGCCATCGTCGC
CGCGCTGCTGCGCCAGCACGCCGTGCGGCACGGCGGCGCCGCGCTCCCGC
GCACCTTCCTGCTCACGCTCGCTGACACGACGCGCTTCTACGAGAGGCTG
GGCTTCCGCGCCGCGGACGCGGCGGCGCTGCCGCTCACCATGCGCCTCGA
GCTGCTGGCGGGCAGCGCGATACAGGCGCTGCTCGGCGGCCGGCTCGTGG
CGATGCAGTTCGGCGGCGCCGACGGCGACGGCAGCAGCAGCAACGGCGCG
CCCACATGA
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Coding sequence (CDS) from alignment at Contig_178:214370..215028+

>mRNA_14285 ID=mRNA_14285|Name=jgi.p|Trimin1|353698|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=387bp|location=Sequence derived from alignment at Contig_178:214370..215028+ (Tribonema minus UTEX_B_3156 )
ATGAATTTCCTGCTGCTAGACCCGAAAAACTTCATCGTGGCGGTAAATCC
CGAGGAAGACGCCGGTGACCAGACCGTCTACGTGCGCGAGGAGGCGCGCG
GCAGGGGCGTCGGCTCGGCCATCGTCGCCGCGCTGCTGCGCCAGCACGCC
GTGCGGCACGGCGGCGCCGCGCTCCCGCGCACCTTCCTGCTCACGCTCGC
TGACACGACGCGCTTCTACGAGAGGCTGGGCTTCCGCGCCGCGGACGCGG
CGGCGCTGCCGCTCACCATGCGCCTCGAGCTGCTGGCGGGCAGCGCGATA
CAGGCGCTGCTCGGCGGCCGGCTCGTGGCGATGCAGTTCGGCGGCGCCGA
CGGCGACGGCAGCAGCAGCAACGGCGCGCCCACATGA
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