mRNA_14275 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353692
Unique NamemRNA_14275
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353692 vs. uniprot
Match: A0A835ZEQ4_9STRA (NAD(P)-bd_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEQ4_9STRA)

HSP 1 Score: 589 bits (1518), Expect = 1.400e-206
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 1 
Query: 1030 MNTQSRASAAGKRLLLVRVSATHSPMSTSSCHQHTRRSADYGAPSEGGRQSLPLPWCTLGAHNSIHASQRAPSLMEQVVVFGGSGFVGQSVCQAALALGCDVVSFSRSGSPEQAPSWASDVQWLKGDIFKPEDYAAELVGATGVVTCVGAFGTDEFMERVCGDANVAAAEAAAAARVPHFVFVSAAGAARAHLLLRGYYAGKAKAEAAVARLYPDTGVCLRPGAIYGDRVVRGVRVPLGAVFAPLERVLSLGGPFAALRDSPFEAAFTPPADVRAVGRAAALAALGRADRALLSVEDINRLAADATA 1950
            MNTQSRASAAGKRLLLVRVSATHSPMSTSSCHQHTRRSADYGAPSEGGRQSLPLPWCTLGAHNSIHASQRAPSLMEQVVVFGGSGFVGQSVCQAALALGCDVVSFSRSGSPEQAPSWASDVQWLKGDIFKPEDYAAELVGATGVVTCVGAFGTDEFMERVCGDANVAAAEAAAAARVPHFVFVSAAGAARAHLLLRGYYAGKAKAEAAVARLYPDTGVCLRPGAIYGDRVVRGVRVPLGAVFAPLERVLSLGGPFAALRDSPFEAAFTPPADVRAVGRAAALAALGRADRALLSVEDINRLAADATA
Sbjct:    1 MNTQSRASAAGKRLLLVRVSATHSPMSTSSCHQHTRRSADYGAPSEGGRQSLPLPWCTLGAHNSIHASQRAPSLMEQVVVFGGSGFVGQSVCQAALALGCDVVSFSRSGSPEQAPSWASDVQWLKGDIFKPEDYAAELVGATGVVTCVGAFGTDEFMERVCGDANVAAAEAAAAARVPHFVFVSAAGAARAHLLLRGYYAGKAKAEAAVARLYPDTGVCLRPGAIYGDRVVRGVRVPLGAVFAPLERVLSLGGPFAALRDSPFEAAFTPPADVRAVGRAAALAALGRADRALLSVEDINRLAADATA 307
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BLAST of jgi.p|Trimin1|353692 vs. uniprot
Match: A0A835ZC82_9STRA (Lipoyl synthase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC82_9STRA)

HSP 1 Score: 489 bits (1260), Expect = 1.820e-167
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 3 
Query:    3 CTRGCKFCAVNTSATPPKPDPFEPFHTAQAVSRWGINYVVLTSVDRDDLPDGGAGHFALTVELIKEAAPGMLVECLVSDFRGDAAAVARLATSGLDVYAHNVETVERLQAHVRDRRAGYAQSLGVLRAAKAARPSLYTKTSLMLGLGETEAEVLQTMRDIREAGVDVLTLGQYLRPTDHHLAVVEYVPPHKFDWYREQGEAMGFKYVASGPLVRSSYKAGEFYLEHMVRSGRAAQEQEGGSTAAASA 743
            CTRGCKFCAVNTSATPPKPDPFEPFHTAQAVSRWGINYVVLTSVDRDDLPDGGAGHFALTVELIKEAAPGMLVECLVSDFRGDAAAVARLATSGLDVYAHNVETVERLQAHVRDRRAGYAQSLGVLRAAKAARPSLYTKTSLMLGLGETEAEVLQTMRDIREAGVDVLTLGQYLRPTDHHLAVVEYVPPHKFDWYREQGEAMGFKYVASGPLVRSSYKAGEFYLEHMVRSGRAAQEQEGGSTAAASA
Sbjct:   63 CTRGCKFCAVNTSATPPKPDPFEPFHTAQAVSRWGINYVVLTSVDRDDLPDGGAGHFALTVELIKEAAPGMLVECLVSDFRGDAAAVARLATSGLDVYAHNVETVERLQAHVRDRRAGYAQSLGVLRAAKAARPSLYTKTSLMLGLGETEAEVLQTMRDIREAGVDVLTLGQYLRPTDHHLAVVEYVPPHKFDWYREQGEAMGFKYVASGPLVRSSYKAGEFYLEHMVRSGRAAQEQEGGSTAAASA 309
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BLAST of jgi.p|Trimin1|353692 vs. uniprot
Match: A0A6H5KCS3_9PHAE (Lipoyl synthase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCS3_9PHAE)

HSP 1 Score: 375 bits (963), Expect = 1.810e-121
Identity = 189/249 (75.90%), Postives = 211/249 (84.74%), Query Frame = 3 
Query:    3 CTRGCKFCAVNTSATPPKPDPFEPFHTAQAVSRWGINYVVLTSVDRDDLPDGGAGHFALTVELIKEAAPGMLVECLVSDFRGDAAAVARLATSGLDVYAHNVETVERLQAHVRDRRAGYAQSLGVLRAAKAARPS--LYTKTSLMLGLGETEAEVLQTMRDIREAGVDVLTLGQYLRPTDHHLAVVEYVPPHKFDWYREQGEAMGFKYVASGPLVRSSYKAGEFYLEHMVRSGRAAQEQEGGSTAAASA 743
            CTRGCKFCAV TS  PP+PDPFEPFHTA+A+SRWGINYVVLTSVDRDDL DGGA HFA TVELIK A   MLVECLVSDFRGD AAV RLATSGLDVYAHN+ETV RLQ +VRD+RAGY QSL VLR AK A  +  +YTKTSLMLGLGETE E+L+TMRD+REAGVDVLTLGQYLRPTDHHLAVV+YV P KFD Y  QG+A+GF YVASGP+VRSSYKAGEF++E+M+R GR  ++    + A ASA
Sbjct:  136 CTRGCKFCAVKTSQKPPEPDPFEPFHTAEAISRWGINYVVLTSVDRDDLEDGGANHFATTVELIKTAKSDMLVECLVSDFRGDYAAVDRLATSGLDVYAHNIETVRRLQPYVRDKRAGYDQSLSVLRRAKIAGEATGVYTKTSLMLGLGETEEEILETMRDLREAGVDVLTLGQYLRPTDHHLAVVDYVTPEKFDQYARQGDALGFSYVASGPMVRSSYKAGEFFMENMIRRGRQGEDAVAAAMAVASA 384
[Close]
BLAST of jgi.p|Trimin1|353692 vs. uniprot
Match: W7T3L4_9STRA (Lipoyl synthase, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3L4_9STRA)

HSP 1 Score: 363 bits (931), Expect = 7.130e-117
Identity = 184/243 (75.72%), Postives = 204/243 (83.95%), Query Frame = 3 
Query:    3 CTRGCKFCAVNTSATPPKPDPFEPFHTAQAVSRWGINYVVLTSVDRDDLPDGGAGHFALTVELIKEAAPGMLVECLVSDFRGDAAAVARLATSGLDVYAHNVETVERLQAHVRDRRAGYAQSLGVLRAAKAARPSLYTKTSLMLGLGETEAEVLQTMRDIREAGVDVLTLGQYLRPTDHHLAVVEYVPPHKFDWYREQGEAMGFKYVASGPLVRSSYKAGEFYLEHMVRSGRAAQEQEGGSTA 731
            CTRGCKFCAV TS  PP  DPFEP  TA+AV+RWGINYVVLTSVDRDD+PDGGA HFA TVE IK   P MLVECLVSDFRGD AAV RLATSGLDVYAHNVETVERLQ +VRD+RA Y QSL VL  AKAA+P++YTKTSLMLGLGE E EVL+ MRD+R   VDVLTLGQYLRPTDHHLAVVEYV P KFD++R+QGE MGFKYVASGPLVRSSYKAGEF+LE+ ++  +A +  E G+ A
Sbjct:  134 CTRGCKFCAVKTSQAPPPADPFEPLKTAEAVARWGINYVVLTSVDRDDMPDGGADHFAQTVEYIKLRKPEMLVECLVSDFRGDLAAVERLATSGLDVYAHNVETVERLQKYVRDKRASYTQSLQVLAHAKAAQPTVYTKTSLMLGLGEEEGEVLEAMRDMRAHNVDVLTLGQYLRPTDHHLAVVEYVTPEKFDFFRKQGEEMGFKYVASGPLVRSSYKAGEFFLENELKRVKAKRAAEQGAMA 376
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BLAST of jgi.p|Trimin1|353692 vs. uniprot
Match: B8BQ31_THAPS (Lipoyl synthase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQ31_THAPS)

HSP 1 Score: 354 bits (908), Expect = 2.150e-114
Identity = 170/232 (73.28%), Postives = 198/232 (85.34%), Query Frame = 3 
Query:    3 CTRGCKFCAVNTSATPPKPDPFEPFHTAQAVSRWGINYVVLTSVDRDDLPDGGAGHFALTVELIKEAAPGMLVECLVSDFRGDAAAVARLATSGLDVYAHNVETVERLQAHVRDRRAGYAQSLGVLRAAKAARPSLYTKTSLMLGLGETEAEVLQTMRDIREAGVDVLTLGQYLRPTDHHLAVVEYVPPHKFDWYREQGEAMGFKYVASGPLVRSSYKAGEFYLEHMVRSGR 698
            CTRGC FCAV T   PP+PDPFEPF TA+AV++WG++Y+VLTSVDRDD+PDGGA HFA TVEL+K+A P +LVECLVSDF+GD+ +VA LATSGLDVYAHNVETVERLQ +VRD RAGY QS+  LR AK A+P LYTKTSLMLGLGET+ EV+QTM+D+R   VDV+T GQYLRPT++HL+VVEYV P KFD +RE GE +GFKYVASGPLVRSSYKAGEFYL HM+   R
Sbjct:   73 CTRGCMFCAVKTDQKPPEPDPFEPFKTAEAVTKWGVDYIVLTSVDRDDIPDGGAQHFATTVELLKQANPSLLVECLVSDFQGDSKSVATLATSGLDVYAHNVETVERLQKYVRDARAGYWQSINTLRDAKRAQPDLYTKTSLMLGLGETDDEVIQTMKDLRSVDVDVVTFGQYLRPTENHLSVVEYVTPEKFDHFREIGEELGFKYVASGPLVRSSYKAGEFYLTHMINKER 304
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BLAST of jgi.p|Trimin1|353692 vs. uniprot
Match: A0A1E7F4Q0_9STRA (Lipoyl synthase, mitochondrial n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F4Q0_9STRA)

HSP 1 Score: 350 bits (899), Expect = 2.970e-113
Identity = 169/238 (71.01%), Postives = 195/238 (81.93%), Query Frame = 3 
Query:    3 CTRGCKFCAVNTSATPPKPDPFEPFHTAQAVSRWGINYVVLTSVDRDDLPDGGAGHFALTVELIKEAAPGMLVECLVSDFRGDAAAVARLATSGLDVYAHNVETVERLQAHVRDRRAGYAQSLGVLRAAKAARPSLYTKTSLMLGLGETEAEVLQTMRDIREAGVDVLTLGQYLRPTDHHLAVVEYVPPHKFDWYREQGEAMGFKYVASGPLVRSSYKAGEFYLEHMVRSGRAAQEQE 716
            CTRGC FCAV T   PP PDPFEPF TA+AV++WG+NY+VLTSVDRDD+PDGGA HFA TVEL+K     +LVECLVSDF+GD  +VA LATSGLDVYAHN+ETVERLQ  +RD +AGY QSL  L  AK A+P LYTKTS+MLGLGETE EVLQTM+D+R   VDV+T GQYLRPT+HHL+VVEYV P  FD+YR+ GE MGFKYVASGP+VRSSYKAGEFYLEHM+ + R    Q+
Sbjct:   49 CTRGCMFCAVKTDTAPPPPDPFEPFKTAEAVAKWGVNYIVLTSVDRDDIPDGGAQHFAHTVELLKHKKEELLVECLVSDFQGDLDSVATLATSGLDVYAHNIETVERLQKFIRDPKAGYQQSLSTLEHAKKAKPGLYTKTSVMLGLGETEKEVLQTMKDLRAIDVDVVTFGQYLRPTEHHLSVVEYVKPEMFDYYRKVGEDMGFKYVASGPMVRSSYKAGEFYLEHMITTDRERSSQK 286
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BLAST of jgi.p|Trimin1|353692 vs. uniprot
Match: A0A1Z5JJT1_FISSO (Lipoyl synthase, mitochondrial n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJT1_FISSO)

HSP 1 Score: 349 bits (896), Expect = 1.780e-111
Identity = 170/234 (72.65%), Postives = 196/234 (83.76%), Query Frame = 3 
Query:    3 CTRGCKFCAVNTSATPPKPDPFEPFHTAQAVSRWGINYVVLTSVDRDDLPDGGAGHFALTVELIKEAAPGMLVECLVSDFRGDAAAVARLATSGLDVYAHNVETVERLQAHVRDRRAGYAQSLGVLRAAKAARPSLYTKTSLMLGLGETEAEVLQTMRDIREAGVDVLTLGQYLRPTDHHLAVVEYVPPHKFDWYREQGEAMGFKYVASGPLVRSSYKAGEFYLEHMVRSGRAA 704
            CTRGC FCAVNT A PP PDPFEPF TA AV++WG++Y+VLTSVDRDD+PDGGA HFA TVEL+K+  P +LVECLVSDF+G  ++V  LA SGLDVYAHNVETVERLQ  VRD RAGYAQSL  L  AK  +PSLYTKTS+MLGLGET+ EV+QTM+D+R   VDV+T GQYLRPT+ HLAVVEYV P KFD +R+ GE MGFKYVASGPLVRSSYKAGEF++EHM++S R A
Sbjct:  152 CTRGCMFCAVNTDAKPPPPDPFEPFKTADAVTKWGVDYIVLTSVDRDDIPDGGAQHFAHTVELLKQKKPELLVECLVSDFQGMLSSVETLALSGLDVYAHNVETVERLQRFVRDHRAGYAQSLSTLEHAKKVKPSLYTKTSIMLGLGETDEEVIQTMKDLRAFDVDVVTFGQYLRPTEQHLAVVEYVRPEKFDMFRQLGEEMGFKYVASGPLVRSSYKAGEFFMEHMIKSERKA 385
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BLAST of jgi.p|Trimin1|353692 vs. uniprot
Match: A0A448Z673_9STRA (Lipoyl synthase, mitochondrial n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z673_9STRA)

HSP 1 Score: 351 bits (901), Expect = 2.130e-111
Identity = 172/238 (72.27%), Postives = 197/238 (82.77%), Query Frame = 3 
Query:    3 CTRGCKFCAVNTSATPPKPDPFEPFHTAQAVSRWGINYVVLTSVDRDDLPDGGAGHFALTVELIKEAAPGMLVECLVSDFRGDAAAVARLATSGLDVYAHNVETVERLQAHVRDRRAGYAQSLGVLRAAKAARPSLYTKTSLMLGLGETEAEVLQTMRDIREAGVDVLTLGQYLRPTDHHLAVVEYVPPHKFDWYREQGEAMGFKYVASGPLVRSSYKAGEFYLEHMVRSGRAAQEQE 716
            CTRGC FCAV T   PP PDPFEPF TA AV++WG++Y+VLTSVDRDD+ DGGA HFA TVEL+K   P +LVECLVSDF+G+  +V  LA SGLDVYAHNVETVERLQ  VRD RAGY QSL  L  AK A+P LYTKTS+MLGLGET+ EVLQTM+D+RE  VDV+T GQYLRPT++HLAVVEYV P  FD+YRE GE MGFKYVASGPLVRSSYKAGEFYLEHM+++ R+AQ+ E
Sbjct:  200 CTRGCMFCAVKTDTKPPPPDPFEPFKTADAVAKWGVDYIVLTSVDRDDIDDGGAQHFAHTVELLKYKKPELLVECLVSDFQGNLTSVETLAVSGLDVYAHNVETVERLQKFVRDPRAGYQQSLSTLEHAKKAKPGLYTKTSIMLGLGETKEEVLQTMKDLREIDVDVVTFGQYLRPTENHLAVVEYVKPEVFDYYREVGEEMGFKYVASGPLVRSSYKAGEFYLEHMIKTERSAQQNE 437
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BLAST of jgi.p|Trimin1|353692 vs. uniprot
Match: A0A7S4VVM7_9STRA (Lipoyl synthase, mitochondrial n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VVM7_9STRA)

HSP 1 Score: 348 bits (894), Expect = 5.590e-111
Identity = 167/238 (70.17%), Postives = 198/238 (83.19%), Query Frame = 3 
Query:    3 CTRGCKFCAVNTSATPPKPDPFEPFHTAQAVSRWGINYVVLTSVDRDDLPDGGAGHFALTVELIKEAAPGMLVECLVSDFRGDAAAVARLATSGLDVYAHNVETVERLQAHVRDRRAGYAQSLGVLRAAKAARPSLYTKTSLMLGLGETEAEVLQTMRDIREAGVDVLTLGQYLRPTDHHLAVVEYVPPHKFDWYREQGEAMGFKYVASGPLVRSSYKAGEFYLEHMVRSGRAAQEQE 716
            CTRGC FCAVNT + PP PDPFEPF TA+AV++WG++Y+VLTSVDRDD+PDGGA HF  TVEL+K   P +LVECLVSDF+GD  +V  LA SGLDVYAHNVETV RLQ  VRD RAGY QSL  L+ AK A+P LYTKTS+MLGLGET+ EV+QTM+D+RE  VDV+T GQYLRPT++HL+VVEYV P KFD +R+ GE MGFKYVASGP+VRSSYKAGEFYL+HM+   RA +E++
Sbjct:  159 CTRGCMFCAVNTDSKPPPPDPFEPFKTAEAVTQWGVDYIVLTSVDRDDIPDGGASHFGTTVELLKAKKPSLLVECLVSDFQGDLNSVETLACSGLDVYAHNVETVRRLQKFVRDPRAGYDQSLSTLKHAKEAKPGLYTKTSIMLGLGETDEEVIQTMKDLREIDVDVVTFGQYLRPTENHLSVVEYVTPEKFDHFRKVGEEMGFKYVASGPMVRSSYKAGEFYLKHMISKERAEKEKQ 396
[Close]
BLAST of jgi.p|Trimin1|353692 vs. uniprot
Match: A0A7S2VAZ1_9STRA (Lipoyl synthase, mitochondrial n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAZ1_9STRA)

HSP 1 Score: 342 bits (878), Expect = 1.370e-109
Identity = 168/238 (70.59%), Postives = 192/238 (80.67%), Query Frame = 3 
Query:    3 CTRGCKFCAVNTSATPPKPDPFEPFHTAQAVSRWGINYVVLTSVDRDDLPDGGAGHFALTVELIKEAAPGMLVECLVSDFRGDAAAVARLATSGLDVYAHNVETVERLQAHVRDRRAGYAQSLGVLRAAKAARPSLYTKTSLMLGLGETEAEVLQTMRDIREAGVDVLTLGQYLRPTDHHLAVVEYVPPHKFDWYREQGEAMGFKYVASGPLVRSSYKAGEFYLEHMVRSGRAAQEQE 716
            CTRGC FCAVNT + PP PDPFEPF TAQAV  WG++Y+VLTSVDRDDLPDGGA HFA TVEL+K   P +LVECLVSDF+G   +VA LA SGLDVYAHNVETVERLQ  VRD RA Y QSL  L  AK   PSLYTKTS+MLGLGET+ EV+QTM+D+R   VDV+T GQYLRPT+HHL+VVEYV P KFD +R+ GE +GFKYVASGP+VRSSYKAGEFYL+HM++  R  +  E
Sbjct:   93 CTRGCMFCAVNTDSKPPPPDPFEPFQTAQAVVEWGVDYIVLTSVDRDDLPDGGAQHFAHTVELLKHQKPELLVECLVSDFQGMEDSVATLAKSGLDVYAHNVETVERLQPFVRDARANYQQSLSTLEHAKKVVPSLYTKTSIMLGLGETDEEVIQTMKDLRAINVDVVTFGQYLRPTEHHLSVVEYVTPEKFDHFRQVGEDLGFKYVASGPMVRSSYKAGEFYLQHMIQKERGEKAAE 330
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353692 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZEQ4_9STRA1.400e-206100.00NAD(P)-bd_dom domain-containing protein n=1 Tax=Tr... [more]
A0A835ZC82_9STRA1.820e-167100.00Lipoyl synthase, mitochondrial n=1 Tax=Tribonema m... [more]
A0A6H5KCS3_9PHAE1.810e-12175.90Lipoyl synthase, mitochondrial n=2 Tax=Ectocarpus ... [more]
W7T3L4_9STRA7.130e-11775.72Lipoyl synthase, mitochondrial n=2 Tax=Monodopsida... [more]
B8BQ31_THAPS2.150e-11473.28Lipoyl synthase (Fragment) n=1 Tax=Thalassiosira p... [more]
A0A1E7F4Q0_9STRA2.970e-11371.01Lipoyl synthase, mitochondrial n=1 Tax=Fragilariop... [more]
A0A1Z5JJT1_FISSO1.780e-11172.65Lipoyl synthase, mitochondrial n=2 Tax=Fistulifera... [more]
A0A448Z673_9STRA2.130e-11172.27Lipoyl synthase, mitochondrial n=1 Tax=Pseudo-nitz... [more]
A0A7S4VVM7_9STRA5.590e-11170.17Lipoyl synthase, mitochondrial n=2 Tax=Ditylum bri... [more]
A0A7S2VAZ1_9STRA1.370e-10970.59Lipoyl synthase, mitochondrial n=1 Tax=Amphiprora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_178contigContig_178:168249..172845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353692|estExt_Genemark1.C_Ctg_1780027
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009987,GO:0010287,GO:0016491,GO:0016651,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901004,GO:1901006,GO:1901576,GO:1901661,GO:1901663
Descriptionubiquinone-6 biosynthetic process
COG categoryGM
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0702@1|root,KOG4288@2759|Eukaryota
Evalue1.44e-76
Seed ortholog2880.D8LG07
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-21_005050.1
TranscriptId354014
TrackFilteredModels1
ProteinId353692
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353692gene_14275Tribonema minus UTEX_B_3156 geneContig_178 168249..172845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353692Trimin1|353692|estExt_Genemark1.C_Ctg_1780027Tribonema minus UTEX_B_3156 polypeptideContig_178 168249..170837 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14275_5exon_14275_5Tribonema minus UTEX_B_3156 exonContig_178 168249..168735 -
exon_14275_4exon_14275_4Tribonema minus UTEX_B_3156 exonContig_178 169385..169590 -
exon_14275_3exon_14275_3Tribonema minus UTEX_B_3156 exonContig_178 170607..171399 -
exon_14275_2exon_14275_2Tribonema minus UTEX_B_3156 exonContig_178 171822..172188 -
exon_14275_1exon_14275_1Tribonema minus UTEX_B_3156 exonContig_178 172746..172845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14275CDS_14275Tribonema minus UTEX_B_3156 CDSContig_178 170607..170837 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14275UTR5_14275Tribonema minus UTEX_B_3156 five_prime_UTRContig_178 172746..172845 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14275 ID=mRNA_14275|Name=jgi.p|Trimin1|353692|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1953bp|location=Sequence derived from alignment at Contig_178:168249..172845- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCTGCACACGGGGGTGCAAGTTCTGTGCCGTCAACACCAGCGCCACCCCG
CCTAAGCCCGATCCCTTTGAGCCCTTCCACACGGCACAGGCTGTGTCCAG
GTGGGGCATCAACTACGTGGTCCTCACGTCCGTGGACCGCGACGATCTGC
CGGACGGCGGCGCGGGGCACTTTGCGCTCACGGTCGAGCTCATCAAGGAG
GCCGCGCCGGGCATGCTCGTGGAGTGCCTGGTGAGCGACTTCCGCGGCGA
CGCGGCGGCGGTCGCGCGGCTCGCGACGTCCGGCCTCGACGTCTACGCGC
ACAACGTGGAGACGGTGGAGCGCCTGCAGGCGCACGTGCGCGACCGGCGC
GCGGGCTACGCGCAGAGCCTCGGCGTGCTGCGCGCGGCCAAGGCGGCACG
CCCGTCGCTGTACACCAAGACGTCGCTCATGCTGGGGCTCGGCGAGACGG
AGGCGGAGGTGCTGCAGACCATGCGCGACATCCGCGAAGCCGGCGTCGAC
GTGCTGACGCTCGGCCAGTACCTGCGCCCCACGGACCACCACCTGGCGGT
TGTGGAGTACGTGCCGCCGCACAAGTTCGACTGGTACCGCGAGCAGGGCG
AGGCGATGGGCTTCAAGTACGTCGCGAGCGGCCCCCTCGTGCGCTCCAGC
TACAAGGCGGGGGAGTTCTATCTGGAGCACATGGTGCGCAGCGGGCGCGC
GGCGCAGGAGCAGGAGGGGGGGAGCACCGCTGCTGCTAGCGCGTGATGCG
CCCGGGGTCGCGCGCTTGCGGCAGCGGCAGGTCTGCATCTGGCGCAGGCT
GCGCGGTGCGTTGCCGCGCTGGTGTGCGAGTATTTGCGCCGTGGAACGCT
TGCTCGCTTTGGCGGTTGGGGCATCGTCGTTGGAATGGCAGCGGACGCCG
CACGCTGCAAGCCATGCAGTGAACGGAAACTATTATGCAGCGCACGAGCG
CGCTTTACCTGTGGGTGTTGGAGGGCAAGGGGGGCGGTGGAAGGAGCGCA
GTGAGCACTTCTACCAGGCGCCGGCGACGATGAACACGCAATCGCGTGCA
TCGGCGGCAGGGAAACGCTTGCTCTTAGTACGTGTTTCAGCAACACACTC
ACCCATGTCCACTTCGAGTTGCCATCAGCACACACGGCGCAGTGCTGACT
ATGGTGCACCCTCAGAGGGAGGGCGGCAGTCGCTGCCATTGCCATGGTGC
ACACTTGGCGCCCACAACAGTATTCACGCCTCACAACGTGCACCGTCCCT
CATGGAGCAGGTTGTCGTGTTCGGCGGCAGCGGCTTTGTGGGGCAGTCCG
TGTGCCAGGCGGCGCTGGCGCTGGGCTGCGACGTGGTGAGCTTCAGCAGG
AGCGGTTCGCCGGAGCAGGCGCCGAGCTGGGCCAGCGACGTGCAGTGGCT
CAAGGGGGACATCTTCAAACCTGAGGACTATGCGGCGGAGCTGGTTGGAG
CCACTGGCGTAGTCACCTGCGTCGGCGCTTTCGGCACCGACGAGTTCATG
GAGCGCGTGTGCGGCGATGCGAACGTCGCCGCCGCGGAGGCGGCGGCGGC
GGCGCGCGTGCCGCACTTCGTCTTCGTCTCCGCGGCGGGCGCGGCGCGCG
CGCACCTGCTGCTGCGCGGCTACTACGCCGGCAAGGCCAAGGCGGAGGCG
GCGGTCGCGCGCCTCTACCCCGACACGGGCGTCTGCCTGCGGCCCGGCGC
GATCTACGGCGACCGCGTCGTGCGCGGCGTGCGTGTGCCGCTCGGCGCCG
TCTTCGCGCCGCTGGAGCGCGTGCTGAGCCTCGGCGGCCCCTTCGCCGCG
CTGCGCGACTCGCCGTTCGAGGCCGCGTTCACGCCGCCCGCGGACGTGCG
CGCCGTGGGGCGCGCAGCTGCGCTCGCCGCGCTCGGCCGCGCGGACCGCG
CGCTGCTGAGCGTTGAGGACATCAACCGGCTAGCTGCGGACGCGACGGCG
TGA
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protein sequence of jgi.p|Trimin1|353692

>Trimin1|353692|estExt_Genemark1.C_Ctg_1780027 ID=Trimin1|353692|estExt_Genemark1.C_Ctg_1780027|Name=jgi.p|Trimin1|353692|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=308bp
MNTQSRASAAGKRLLLVRVSATHSPMSTSSCHQHTRRSADYGAPSEGGRQ
SLPLPWCTLGAHNSIHASQRAPSLMEQVVVFGGSGFVGQSVCQAALALGC
DVVSFSRSGSPEQAPSWASDVQWLKGDIFKPEDYAAELVGATGVVTCVGA
FGTDEFMERVCGDANVAAAEAAAAARVPHFVFVSAAGAARAHLLLRGYYA
GKAKAEAAVARLYPDTGVCLRPGAIYGDRVVRGVRVPLGAVFAPLERVLS
LGGPFAALRDSPFEAAFTPPADVRAVGRAAALAALGRADRALLSVEDINR
LAADATA*
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mRNA from alignment at Contig_178:168249..172845-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14275 ID=mRNA_14275|Name=jgi.p|Trimin1|353692|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4597bp|location=Sequence derived from alignment at Contig_178:168249..172845- (Tribonema minus UTEX_B_3156 )
CCTGCACACGGGGGTGCAAGTTCTGTGCCGTCAACACCAGCGCCACCCCG
CCTAAGCCCGATCCCTTTGAGCCCTTCCACACGGCACAGGCTGTGTCCAG
GTACGCATGCCATACGCTTAGAGCACAATCACTTCAGCGAAAGCAATGAC
CTGGCTGCTTTTAGGACAGTGCAGTTTGTCGTCTGCCGGATGAGGCAGAG
TGTACCCGTAAAGTCACTTGCGTGTTCAGTTCAATATTTAGTGTGAGTAT
CTGTCGGATCTTGAATGCCAGTCTATATTGGTGGAGGTCCTATCGATGTT
TTGCCACTTTGCCATTTGTTGATCTGCATGAAGTTACAATGCACTCAAGT
ATAGGGCTATCTGCTCTTGCAATGGAACGTTAGTCAGATGCAGCACCAAC
GCTGCTCACCAACAGTCTGGACCATAAAGTGGGACGCAGCAGTAGTGTGA
TGGCAGCTGCGCAGCTTACGCGGCGGAAGGCAAATTGGTATCTTCTGATT
CGTGATCATTTGGACCATTCAATTTCATAGAGCATGAATTCTGCAATCGG
TCAACCTAGAGTTCAGTCCATAGACACTCGCGACGACGTCCTGCCGGTCG
CTGCGGCACCTCACCCGCCACGCGCGCCGCCGCCGCCGCCGCCGCCGCCG
CGCGCAGGTGGGGCATCAACTACGTGGTCCTCACGTCCGTGGACCGCGAC
GATCTGCCGGACGGCGGCGCGGGGCACTTTGCGCTCACGGTCGAGCTCAT
CAAGGAGGCCGCGCCGGGCATGCTCGTGGAGTGCCTGGTGAGCGACTTCC
GCGGCGACGCGGCGGCGGTCGCGCGGCTCGCGACGTCCGGCCTCGACGTC
TACGCGCACAACGTGGAGACGGTGGAGCGCCTGCAGGCGCACGTGCGCGA
CCGGCGCGCGGGCTACGCGCAGAGCCTCGGCGTGCTGCGCGCGGCCAAGG
CGGCACGCCCGTCGCTGTACACCAAGACGTCGCTCATGCTGGGGCTCGGC
GAGACGGAGGCGGAGGTGCTGCAGGTGAGCTGCCGCCGCTGCCGCCGCTG
CTGCTGCCGCCACGCGAGGCGCGCTGCGCGGCGCCCGTTCGGCTGCGCGC
CAGGCGGCGCTCGTGCTGGTGAAGCCGCGTGGCAACTATCCCCAATGCTT
AACGGCTTACCGCCTGCTACATCACCACGCCGCCGATGCCGCATTCATTT
CATCCGTCGCTGCAGTAAGATATGCAGGCGGCAGCGCCGTCTTGCACTGT
CGACCCGCCGCTGCGGCATGCAGTACCCATTCATCCGTTGCTGCTGCTGC
GACAGTCTGCACGAGGGCGCCGACGCGGCCTCGCGCGCACCGACTACCTG
CAAGCATCCGCAGAGCCAGCTCAGGCAGCGCTGCTCAGCTGCTGCTGCTC
ATGCCGCCCTCCGCCCCCTGTCCCCCCTCTGCGCGCGCGCGCGCAGACCA
TGCGCGACATCCGCGAAGCCGGCGTCGACGTGCTGACGCTCGGCCAGTAC
CTGCGCCCCACGGACCACCACCTGGCGGTTGTGGAGTACGTGCCGCCGCA
CAAGTTCGACTGGTACCGCGAGCAGGGCGAGGCGATGGGCTTCAAGTACG
TCGCGAGCGGCCCCCTCGTGCGCTCCAGCTACAAGGCGGGGGAGTTCTAT
CTGGAGCACATGGTGCGCAGCGGGCGCGCGGCGCAGGAGCAGGAGGGGGG
GAGCACCGCTGCTGCTAGCGCGTGATGCGCCCGGGGTCGCGCGCTTGCGG
CAGCGGCAGGTCTGCATCTGGCGCAGGCTGCGCGGTGCGTTGCCGCGCTG
GTGTGCGAGTATTTGCGCCGTGGAACGCTTGCTCGCTTTGGCGGTTGGGG
CATCGTCGTTGGAATGGCAGCGGACGCCGCACGCTGCAAGCCATGCAGTG
AACGGAAACTATTATGCAGCGCACGAGCGCGCTTTACCTGTGGGTGTTGG
AGGGCAAGGGGGGCGGTGGAAGGAGCGCAGTGAGCACTTCTACCAGGCGC
CGGCGACGATGAACACGCAATCGCGTGCATCGGCGGCAGGGAAACGCTTG
CTCTTAGTACGTGTTTCAGCAACACACTCACCCATGTCCACTTCGAGTTG
CCATCAGCACACACGGCGCAGTGCTGACTATGGTGCACCCTCAGAGGGAG
GGCGGCAGTCGCTGCCATTGCCATGGTGCACACTTGGCGCCCACAACAGT
ATTCACGCCTCACAACGTGCACCGTCCCTCATGGAGCAGGTGCATTGCTG
TAAAGCTCATGGTGTACGCTGATTTTCCTGTAAATAGTTTACGTACAGAG
CACAGAGCTTAGGTCACGTGTAACACTATTAATGAATGGGGCGGCGCCAT
TGCCACAACTGGACTTGCTTTGATTTCACTTGATCATCGGACGTCGCTCA
CCATTGCTGCGTCTATGCTATTTTTACTTCATTCCATTGTGTCCATGCTG
CATCAAGATGCGTAGATGCAAATGCAACTGTACTTTGCTGCACACTTGAC
CTTCTTGTTGTGCACAATTGTGCTTTTTGAGTCACAACTGCAACTTCAAA
GCCACTCGGAACTTCAAGTACTTGCAGTTTGTTTTGTGTCCTGGTATCCG
GGAGAGCAACGCAGCATGTTTGCGCTAAGAAGAGCATCGAGCAGGGCGCT
GCCTCGACCGTCACACATCGCTCGTGCCCTGAGCGACTCTATCGCATCTG
AGACACCACAAGCTCCATCGTCAGCGGCACCGAAGGTGCGAAGGATGACT
CACCACCTCTTTTGTCACTTGTTCTCGTGCAGTCAGCAGCATCCACCCTT
CTTCGCTTCGGTCTTTTGTGCTTCTGCAGCATGCACCGCAACGTCGAATG
GCAGCTACAATACAATCCTCGGGATTACGCTCTGCAGGCACACATTCTAC
AATTTTTGTCACGCACTCGCTATGCTGTCGTTCAGAGGATCTGTTGTGCA
ACTATTAACACTCAAGTCTCATTGATGAGTTTTGTAAGCAGGCGTTGCAA
TAAGGTAATATCTGCGCGGCGGGTACGATACCGTAGGTTGGTGACCGAGA
AGCTGGCTTTACTGCTTGGTCGCACACTCAGTCCTGCAATGTCTGGTGAC
TGCAAACACAGTGACCTGCTCGACTATGTGAACTCCATGCGCATCAACAT
CGAGAAAAACTCTCAAACCTTACGCAGAGCACTGTCGACATCTCACTTCC
CGACACTCCCTCCCCCCCCCCGGCCCCCATCCTGCCACGGGTACTCACCT
CTCAGGTTGTCGTGTTCGGCGGCAGCGGCTTTGTGGGGCAGTCCGTGTGC
CAGGCGGCGCTGGCGCTGGGCTGCGACGTGGTGAGCTTCAGCAGGAGCGG
TTCGCCGGAGCAGGCGCCGAGCTGGGCCAGCGACGTGCAGTGGCTCAAGG
GGGACATCTTCAAACCTGAGGACTATGCGGCGGAGCTGGTTGGAGCCACT
GGCGTAGTCACGTGAGCGCCGCGCGAGAAGGACGCTGCGTGCGTGATGAT
GCAGCGGCGTGCGAGCCACTTTACGTGCAGCCGGTGTGGGTCGTGTGTCG
CCAGGCTGACGGCGTGTAGCAGCTGGCGTGTCGAATGCACTGGCGGGGAA
GCAGTGGGGGTCACGCCCTGATGTGCGTGAGACGGAAGGCCGTGCTTGTT
GTCTGGGTCACACTGTGATCGTGCTCAAATCTGAGGGCTGCAGGCAGGCC
TGTTGTTCGCAGCTGCCGCTGCGTCGTTTGCAGCTGCTGCTGCGTCGCTT
GCCCAAACACACCAGCGCACCTGCGGCCACAATGCCAGGAACACGCATTG
GCATGTGGACTATGCTGATCGGCAGCTGCACTGCAAGCTTATGCTTGGTC
AACAGCAGGTCGGTGAAGTGTGCATCATACGTTCCACCGGCCTCAGCTGA
GGGAGCGCAGTCCCCTCTTGTTCCTGTCACCACCGCAGCAGCCGCCGCTG
CACACGGCTCACGCACACGCCCCCCGATACCGAGGCCTGGACGTAGCTGT
GCTGCCACAGACGTGCGCAAGAGACCTCCACTGCCGTATGAAATTCTGTT
CACCTCAGCACTGCATGCCGTGCAGCCCAGATAACTCATCACATCCTCGC
CCGCTCGCAGCTGCGTCGGCGCTTTCGGCACCGACGAGTTCATGGAGCGC
GTGTGCGGCGATGCGAACGTCGCCGCCGCGGAGGCGGCGGCGGCGGCGCG
CGTGCCGCACTTCGTCTTCGTCTCCGCGGCGGGCGCGGCGCGCGCGCACC
TGCTGCTGCGCGGCTACTACGCCGGCAAGGCCAAGGCGGAGGCGGCGGTC
GCGCGCCTCTACCCCGACACGGGCGTCTGCCTGCGGCCCGGCGCGATCTA
CGGCGACCGCGTCGTGCGCGGCGTGCGTGTGCCGCTCGGCGCCGTCTTCG
CGCCGCTGGAGCGCGTGCTGAGCCTCGGCGGCCCCTTCGCCGCGCTGCGC
GACTCGCCGTTCGAGGCCGCGTTCACGCCGCCCGCGGACGTGCGCGCCGT
GGGGCGCGCAGCTGCGCTCGCCGCGCTCGGCCGCGCGGACCGCGCGCTGC
TGAGCGTTGAGGACATCAACCGGCTAGCTGCGGACGCGACGGCGTGA
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Coding sequence (CDS) from alignment at Contig_178:168249..172845-

>mRNA_14275 ID=mRNA_14275|Name=jgi.p|Trimin1|353692|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=924bp|location=Sequence derived from alignment at Contig_178:168249..172845- (Tribonema minus UTEX_B_3156 )
ATGAACACGCAATCGCGTGCATCGGCGGCAGGGAAACGCTTGCTCTTAGT
ACGTGTTTCAGCAACACACTCACCCATGTCCACTTCGAGTTGCCATCAGC
ACACACGGCGCAGTGCTGACTATGGTGCACCCTCAGAGGGAGGGCGGCAG
TCGCTGCCATTGCCATGGTGCACACTTGGCGCCCACAACAGTATTCACGC
CTCACAACGTGCACCGTCCCTCATGGAGCAGGTTGTCGTGTTCGGCGGCA
GCGGCTTTGTGGGGCAGTCCGTGTGCCAGGCGGCGCTGGCGCTGGGCTGC
GACGTGGTGAGCTTCAGCAGGAGCGGTTCGCCGGAGCAGGCGCCGAGCTG
GGCCAGCGACGTGCAGTGGCTCAAGGGGGACATCTTCAAACCTGAGGACT
ATGCGGCGGAGCTGGTTGGAGCCACTGGCGTAGTCACCTGCGTCGGCGCT
TTCGGCACCGACGAGTTCATGGAGCGCGTGTGCGGCGATGCGAACGTCGC
CGCCGCGGAGGCGGCGGCGGCGGCGCGCGTGCCGCACTTCGTCTTCGTCT
CCGCGGCGGGCGCGGCGCGCGCGCACCTGCTGCTGCGCGGCTACTACGCC
GGCAAGGCCAAGGCGGAGGCGGCGGTCGCGCGCCTCTACCCCGACACGGG
CGTCTGCCTGCGGCCCGGCGCGATCTACGGCGACCGCGTCGTGCGCGGCG
TGCGTGTGCCGCTCGGCGCCGTCTTCGCGCCGCTGGAGCGCGTGCTGAGC
CTCGGCGGCCCCTTCGCCGCGCTGCGCGACTCGCCGTTCGAGGCCGCGTT
CACGCCGCCCGCGGACGTGCGCGCCGTGGGGCGCGCAGCTGCGCTCGCCG
CGCTCGGCCGCGCGGACCGCGCGCTGCTGAGCGTTGAGGACATCAACCGG
CTAGCTGCGGACGCGACGGCGTGA
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