mRNA_14261 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353686
Unique NamemRNA_14261
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353686 vs. uniprot
Match: A0A835Z9X6_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X6_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.820e-56
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 3 
Query:   96 MPTQTLPGIIIVGAAVGLAGAILGGVHRLSTGEWRMSGRTKWDFDCANRDKRVRAWQKQIDKQLADQAKDPAAAEALSYYPIAHEDYE 359
            MPTQTLPGIIIVGAAVGLAGAILGGVHRLSTGEWRMSGRTKWDFDCANRDKRVRAWQKQIDKQLADQAKDPAAAEALSYYPIAHEDYE
Sbjct:    1 MPTQTLPGIIIVGAAVGLAGAILGGVHRLSTGEWRMSGRTKWDFDCANRDKRVRAWQKQIDKQLADQAKDPAAAEALSYYPIAHEDYE 88
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353686 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z9X6_9STRA1.820e-56100.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_178contigContig_178:107007..107703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353686|estExt_Genemark1.C_Ctg_1780017
Hectar predicted targeting categorysignal peptide
TranscriptId354008
TrackFilteredModels1
ProteinId353686
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353686gene_14261Tribonema minus UTEX_B_3156 geneContig_178 107007..107703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353686Trimin1|353686|estExt_Genemark1.C_Ctg_1780017Tribonema minus UTEX_B_3156 polypeptideContig_178 107007..107364 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14261_3exon_14261_3Tribonema minus UTEX_B_3156 exonContig_178 107007..107051 -
exon_14261_2exon_14261_2Tribonema minus UTEX_B_3156 exonContig_178 107143..107369 -
exon_14261_1exon_14261_1Tribonema minus UTEX_B_3156 exonContig_178 107614..107703 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14261CDS_14261Tribonema minus UTEX_B_3156 CDSContig_178 107143..107364 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14261UTR5_14261Tribonema minus UTEX_B_3156 five_prime_UTRContig_178 107614..107703 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14261 ID=mRNA_14261|Name=jgi.p|Trimin1|353686|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=362bp|location=Sequence derived from alignment at Contig_178:107007..107703- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCGCCACACACGCCTGAGAGCTCTGGCAAGGCAGCTGCAGCGCAGATA
GCCTGTGGTCGGACCTCATCCAATCTTCGTGCCCCATCTGACACCATGCC
TACTCAGACACTCCCCGGTATCATCATCGTCGGCGCGGCGGTGGGGTTGG
CCGGAGCCATCCTCGGAGGAGTGCACAGGCTGTCAACAGGAGAGTGGAGG
ATGAGTGGCAGGACCAAGTGGGACTTCGACTGTGCCAACAGGGACAAGCG
CGTCAGAGCATGGCAAAAGCAGATAGATAAGCAGCTGGCAGACCAGGCGA
AGGATCCGGCAGCAGCAGAGGCGCTGTCGTACTACCCTATCGCCCACGAG
GATTATGAATAA
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protein sequence of jgi.p|Trimin1|353686

>Trimin1|353686|estExt_Genemark1.C_Ctg_1780017 ID=Trimin1|353686|estExt_Genemark1.C_Ctg_1780017|Name=jgi.p|Trimin1|353686|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=89bp
MPTQTLPGIIIVGAAVGLAGAILGGVHRLSTGEWRMSGRTKWDFDCANRD
KRVRAWQKQIDKQLADQAKDPAAAEALSYYPIAHEDYE*
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mRNA from alignment at Contig_178:107007..107703-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14261 ID=mRNA_14261|Name=jgi.p|Trimin1|353686|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=697bp|location=Sequence derived from alignment at Contig_178:107007..107703- (Tribonema minus UTEX_B_3156 )
CTGCGCCACACACGCCTGAGAGCTCTGGCAAGGCAGCTGCAGCGCAGATA
GCCTGTGGTCGGACCTCATCCAATCTTCGTGCCCCATCTGGTGAGTCAAT
GATGTTTGTGTTTCTTGCACTTGCGTTTCCAACTAGAGCTTCGCTGCACT
TTTGCGTTGCCTTACCTCATACACATGACGTGCAGTTGCGAACAGTAAAG
CCTGATTCCCATTCACAAGTGTCTGATGTCCGCCTAATGATGTGAGCACA
GACTCAGTGAAGGCTGCAATTGATGTTTGCACATCGGCGCGTCGGCGCCA
AATATGCCACTTCGTCCTGCCATCGCCTCCGCAGACACCATGCCTACTCA
GACACTCCCCGGTATCATCATCGTCGGCGCGGCGGTGGGGTTGGCCGGAG
CCATCCTCGGAGGAGTGCACAGGCTGTCAACAGGAGAGTGGAGGATGAGT
GGCAGGACCAAGTGGGACTTCGACTGTGCCAACAGGGACAAGCGCGTCAG
AGCATGGCAAAAGCAGATAGATAAGCAGCTGGCAGACCAGGCGAAGGATC
CGGCAGCAGCAGTAAAGGAATGGCGCTCAATGTGAATAGGGAGCTGGGTT
GCAGGCGTTGTGGGGATGTAGCCAAGGTCAGACGCAATGTCATCACGTAC
AGGAGGCGCTGTCGTACTACCCTATCGCCCACGAGGATTATGAATAA
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Coding sequence (CDS) from alignment at Contig_178:107007..107703-

>mRNA_14261 ID=mRNA_14261|Name=jgi.p|Trimin1|353686|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=267bp|location=Sequence derived from alignment at Contig_178:107007..107703- (Tribonema minus UTEX_B_3156 )
ATGCCTACTCAGACACTCCCCGGTATCATCATCGTCGGCGCGGCGGTGGG
GTTGGCCGGAGCCATCCTCGGAGGAGTGCACAGGCTGTCAACAGGAGAGT
GGAGGATGAGTGGCAGGACCAAGTGGGACTTCGACTGTGCCAACAGGGAC
AAGCGCGTCAGAGCATGGCAAAAGCAGATAGATAAGCAGCTGGCAGACCA
GGCGAAGGATCCGGCAGCAGCAGAGGCGCTGTCGTACTACCCTATCGCCC
ACGAGGATTATGAATAA
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