Trimin1|353663|estExt_Genemark1.C_Ctg_1770007 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|353663
Unique Name	Trimin1\|353663\|estExt_Genemark1.C_Ctg_1770007
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	268

Homology

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BLAST of jgi.p|Trimin1|353663 vs. uniprot
Match: A0A835Z5I1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I1_9STRA)

HSP 1 Score: 545 bits (1405), Expect = 2.560e-196
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0

Query:    1 MALHRVVRTHAGHDREVAVTPDGRRMLSGGWDRRLCVWSLETRARLMEAPPLRAMVTALALLPGDRCAVAEHGGFVAVWSFAGDVLQCLSITKIPGWSGMMSALSMGAPPPPLQTPAALNTPDCWLAIGARHPLLTDDMEPSEMRYQGFGAEAAGSVVAGGAAVLRMVRVGTGGAVTLMDAQDVPWPYGAPLAVASLALSADSTRLAMCTQQRSGDVRWRLGLWDVNIATGRLAYSRDISYHGHVTQLAWAPRSEGNRWLLASCSDG 267
            MALHRVVRTHAGHDREVAVTPDGRRMLSGGWDRRLCVWSLETRARLMEAPPLRAMVTALALLPGDRCAVAEHGGFVAVWSFAGDVLQCLSITKIPGWSGMMSALSMGAPPPPLQTPAALNTPDCWLAIGARHPLLTDDMEPSEMRYQGFGAEAAGSVVAGGAAVLRMVRVGTGGAVTLMDAQDVPWPYGAPLAVASLALSADSTRLAMCTQQRSGDVRWRLGLWDVNIATGRLAYSRDISYHGHVTQLAWAPRSEGNRWLLASCSDG
Sbjct:    1 MALHRVVRTHAGHDREVAVTPDGRRMLSGGWDRRLCVWSLETRARLMEAPPLRAMVTALALLPGDRCAVAEHGGFVAVWSFAGDVLQCLSITKIPGWSGMMSALSMGAPPPPLQTPAALNTPDCWLAIGARHPLLTDDMEPSEMRYQGFGAEAAGSVVAGGAAVLRMVRVGTGGAVTLMDAQDVPWPYGAPLAVASLALSADSTRLAMCTQQRSGDVRWRLGLWDVNIATGRLAYSRDISYHGHVTQLAWAPRSEGNRWLLASCSDG 267

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BLAST of jgi.p|Trimin1|353663 vs. uniprot
Match: A0A0G9HK46_9GAMM (Uncharacterized protein n=1 Tax=Luteibacter rhizovicinus DSM 16549 TaxID=1440763 RepID=A0A0G9HK46_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 8.870e-5
Identity = 35/88 (39.77%), Postives = 46/88 (52.27%), Query Frame = 0

Query:   10 HAGHDREVAVTPDGRRMLSGGWDRRLCVWSLETRARLMEAPPLRAMVTALALLPGDRCAV-AEHGGFVAVWSFAGDVLQCLSITKIPG 96
            H G  R VA TPDGR++LS GWDR L V S   RA    A    + + A+A+ PG    V  ++ G V+ W   G+    L  +KI G
Sbjct:  579 HGGIVRAVAFTPDGRQVLSAGWDRTLRVASFPDRAGEPGATANPSGINAMAVQPGGNIVVLGDNDGTVSFWRREGNAATLLHRSKIAG 666

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353663 vs. uniprot

BLAST of jgi.p|Trimin1|353663 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835Z5I1_9STRA	2.560e-196	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A0G9HK46_9GAMM	8.870e-5	39.77	Uncharacterized protein n=1 Tax=Luteibacter rhizov...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 3..39 e-value: 0.0057 score: 25.9 coord: 42..80 e-value: 390.0 score: 0.7
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 7..48 score: 10.976305
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 3..50 e-value: 4.4E-6 score: 28.1
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 51..267 e-value: 1.1E-5 score: 26.8
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 7..42 score: 8.544697
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	SUPERFAMILY	50998	Quinoprotein alcohol dehydrogenase-like	coord: 6..266

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_177	contig	Contig_177:80728..86754 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353663	mRNA_15673	Tribonema minus UTEX_B_3156	mRNA	Contig_177 80728..86754 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|353663|estExt_Genemark1.C_Ctg_1770007 ID=Trimin1|353663|estExt_Genemark1.C_Ctg_1770007|Name=jgi.p|Trimin1|353663|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=268bp
MALHRVVRTHAGHDREVAVTPDGRRMLSGGWDRRLCVWSLETRARLMEAP
PLRAMVTALALLPGDRCAVAEHGGFVAVWSFAGDVLQCLSITKIPGWSGM
MSALSMGAPPPPLQTPAALNTPDCWLAIGARHPLLTDDMEPSEMRYQGFG
AEAAGSVVAGGAAVLRMVRVGTGGAVTLMDAQDVPWPYGAPLAVASLALS
ADSTRLAMCTQQRSGDVRWRLGLWDVNIATGRLAYSRDISYHGHVTQLAW
APRSEGNRWLLASCSDG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR011047	Quinoprotein_ADH-like_supfam