Trimin1|353657|estExt_Genemark1.C_Ctg_1760021 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|353657
Unique Name	Trimin1\|353657\|estExt_Genemark1.C_Ctg_1760021
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	544

Homology

[Close]

BLAST of jgi.p|Trimin1|353657 vs. uniprot
Match: A0A835Z736_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z736_9STRA)

HSP 1 Score: 1119 bits (2894), Expect = 0.000e+0
Identity = 543/543 (100.00%), Postives = 543/543 (100.00%), Query Frame = 0

Query:    1 MNLPPDWRNMPAEALDGYMEYDEYSEGEYYEDDMMFVRPKGRGKRNGGGSAKKPKLPSVARPKPKVAELVKDVGGDRAAWAAELFKAVDDNNAQLIANSLRKLLPTDAATMELDDPVIKVVRNAFTRLEKNWKGECDRAKQTRIETEPDKEPVWMGGFPVPAEVFSQIMYTVDQQSALDSSATSKGWYKSTSTLPHWTHLNFSLRGGGGVMWSKMLQRIDAMRYRNPWRTPAALTIGHSIKVGAMKSLKAVMPQLQYLDLTAHGGFTHIANYHDLSKHFPNLKGLACDYKTFGSRNLPFGHDLQTLGHYYPNLQYLDYTCQLGFDQCNRHGGLRAHDIVRLADRMTKLRRLQINGFNGQSHAHTAEGMEGMMVALATKLPELTFLELRGGPVSAGGWRAFLKARRDADLPPLKQIAICVPYPQYMWSDPWMSKNQRLEEAAADRRDALDPVKVAAKKAREEEQEARRSGMVPGIALCEAFAADGICVSVTLPGWITNGKDEDGEVVTSGAKCGGLVCFRTNDYKGGSHRSYGCLWMMEDDNRW 543
            MNLPPDWRNMPAEALDGYMEYDEYSEGEYYEDDMMFVRPKGRGKRNGGGSAKKPKLPSVARPKPKVAELVKDVGGDRAAWAAELFKAVDDNNAQLIANSLRKLLPTDAATMELDDPVIKVVRNAFTRLEKNWKGECDRAKQTRIETEPDKEPVWMGGFPVPAEVFSQIMYTVDQQSALDSSATSKGWYKSTSTLPHWTHLNFSLRGGGGVMWSKMLQRIDAMRYRNPWRTPAALTIGHSIKVGAMKSLKAVMPQLQYLDLTAHGGFTHIANYHDLSKHFPNLKGLACDYKTFGSRNLPFGHDLQTLGHYYPNLQYLDYTCQLGFDQCNRHGGLRAHDIVRLADRMTKLRRLQINGFNGQSHAHTAEGMEGMMVALATKLPELTFLELRGGPVSAGGWRAFLKARRDADLPPLKQIAICVPYPQYMWSDPWMSKNQRLEEAAADRRDALDPVKVAAKKAREEEQEARRSGMVPGIALCEAFAADGICVSVTLPGWITNGKDEDGEVVTSGAKCGGLVCFRTNDYKGGSHRSYGCLWMMEDDNRW
Sbjct:    1 MNLPPDWRNMPAEALDGYMEYDEYSEGEYYEDDMMFVRPKGRGKRNGGGSAKKPKLPSVARPKPKVAELVKDVGGDRAAWAAELFKAVDDNNAQLIANSLRKLLPTDAATMELDDPVIKVVRNAFTRLEKNWKGECDRAKQTRIETEPDKEPVWMGGFPVPAEVFSQIMYTVDQQSALDSSATSKGWYKSTSTLPHWTHLNFSLRGGGGVMWSKMLQRIDAMRYRNPWRTPAALTIGHSIKVGAMKSLKAVMPQLQYLDLTAHGGFTHIANYHDLSKHFPNLKGLACDYKTFGSRNLPFGHDLQTLGHYYPNLQYLDYTCQLGFDQCNRHGGLRAHDIVRLADRMTKLRRLQINGFNGQSHAHTAEGMEGMMVALATKLPELTFLELRGGPVSAGGWRAFLKARRDADLPPLKQIAICVPYPQYMWSDPWMSKNQRLEEAAADRRDALDPVKVAAKKAREEEQEARRSGMVPGIALCEAFAADGICVSVTLPGWITNGKDEDGEVVTSGAKCGGLVCFRTNDYKGGSHRSYGCLWMMEDDNRW 543

[Close]

BLAST of jgi.p|Trimin1|353657 vs. uniprot
Match: A0A836CLE9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLE9_9STRA)

HSP 1 Score: 282 bits (721), Expect = 1.400e-84
Identity = 194/487 (39.84%), Postives = 259/487 (53.18%), Query Frame = 0

Query:   64 PKVAELVKDVGGDRAAWAAELFKAVDDNNAQLIANSLRKLLPTDAATMELDDPVIKVVRNAFTRLEKNWKGECDRAKQTRIETEPDKEPVWMGGFPVPAEVFSQIMYTVDQQSALDSSATSKGWYKSTSTLPHWTHLNFSLRGGGGVMWSKMLQRIDAMRYRNPWRTPAALTIGHSIKVGAMKSLKAVMPQLQYLDLTAHGGFTHIANYHDLSKHFPNLKGLACDYKTFGSRNLPFGHDLQTLGHYYPNLQYLDYTCQLGFDQC---------NRHGGLRAHDIVRLADRMTKLRRLQINGFNGQSHAHTAEGMEGMMVALATKLPELTFLELRGGPVSAGGWRAFLKARRDADLPPLKQIAICV-PYPQYMWSDPWMSKNQRLEEAAADRRDALDPVKVAAKKAREEEQEARRSGMVPGIALCEAFAADGICVSVTLPGWITNGKDEDGEVVTSGAKCGGLV---CFRTNDYKGGSHRSYGCLWMM 537
            PK A++      D  AWA +LF A++  +A L+A+ LRKLLPT+A  M +DDP++K ++N  TRL+  W  E + A++ R E    +EPV MGG  VP +VF+Q+M  +D+ +A  SS+ S+GW K          L F+                             ALTIG  +K+GAM SLK  +P L+YLD T     T + NY D + +FPNLKGLA    ++GS       DL TL   +PNLQ L Y+                 +  G L A DIV +A  +  LR+L I GF+ Q  AH  E M  MMVALAT LPELT L+L   P+ A  WRAFL ARR+A   PL+++ I V P P+    + ++ K    E  AA+   A DPV++A KKA EEE  A R  MVPG  L  AFAA+G  V++ +        DEDG  V +     GLV   C  +  Y+ G+H   GCLWMM
Sbjct:  119 PKEAQVASGSREDPGAWANDLFLAIEKGSAPLLADCLRKLLPTEAKAMGVDDPILKAIKNGCTRLQNTWTAEVEAAQRMRKEGAVTQEPVKMGGALVPPKVFAQMMNMLDRGTAKRSSSVSQGWAK---------RLTFN-----------------------------ALTIGSRVKLGAMSSLKRALPMLEYLDATCARSSTSM-NYEDTATNFPNLKGLATACCSYGSHR----KDLCTLAENFPNLQCLSYSXXXXXXXXXXSVSRGYRSSSGELLAEDIVTVARWIRGLRKLHITGFDTQPGAHAPEEMREMMVALATNLPELTHLDLNEAPIPADAWRAFLAARREAGHSPLRELQIYVAPLPKKR--EVYVKKTP--ETVAAEAAAARDPVQIAKKKAEEEELLAARCRMVPGAVLRAAFAAEGSRVTIAVGNCNAGMVDEDGAEVKAARMHNGLVRMKCLSSGYYRHGAH---GCLWMM 555

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353657 vs. uniprot

BLAST of jgi.p|Trimin1|353657 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835Z736_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CLE9_9STRA	1.400e-84	39.84	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 175..418 e-value: 5.1E-10 score: 40.3

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_176	contig	Contig_176:201734..213198 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353657	mRNA_16991	Tribonema minus UTEX_B_3156	mRNA	Contig_176 201734..213709 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|353657|estExt_Genemark1.C_Ctg_1760021 ID=Trimin1|353657|estExt_Genemark1.C_Ctg_1760021|Name=jgi.p|Trimin1|353657|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=544bp
MNLPPDWRNMPAEALDGYMEYDEYSEGEYYEDDMMFVRPKGRGKRNGGGS
AKKPKLPSVARPKPKVAELVKDVGGDRAAWAAELFKAVDDNNAQLIANSL
RKLLPTDAATMELDDPVIKVVRNAFTRLEKNWKGECDRAKQTRIETEPDK
EPVWMGGFPVPAEVFSQIMYTVDQQSALDSSATSKGWYKSTSTLPHWTHL
NFSLRGGGGVMWSKMLQRIDAMRYRNPWRTPAALTIGHSIKVGAMKSLKA
VMPQLQYLDLTAHGGFTHIANYHDLSKHFPNLKGLACDYKTFGSRNLPFG
HDLQTLGHYYPNLQYLDYTCQLGFDQCNRHGGLRAHDIVRLADRMTKLRR
LQINGFNGQSHAHTAEGMEGMMVALATKLPELTFLELRGGPVSAGGWRAF
LKARRDADLPPLKQIAICVPYPQYMWSDPWMSKNQRLEEAAADRRDALDP
VKVAAKKAREEEQEARRSGMVPGIALCEAFAADGICVSVTLPGWITNGKD
EDGEVVTSGAKCGGLVCFRTNDYKGGSHRSYGCLWMMEDDNRW*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf