Trimin1|353654|estExt_Genemark1.C_Ctg_1760013 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353654
Unique NameTrimin1|353654|estExt_Genemark1.C_Ctg_1760013
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length204
Homology
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: A0A835ZCC9_9STRA (IFT27, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC9_9STRA)

HSP 1 Score: 410 bits (1053), Expect = 8.620e-145
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0
Query:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGSRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAEGLAGVGGF 203
            MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGSRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAEGLAGVGGF
Sbjct:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGSRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAEGLAGVGGF 203          
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: D7FJQ1_ECTSI (IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ1_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 1.740e-85
Identity = 126/204 (61.76%), Postives = 160/204 (78.43%), Query Frame = 0
Query:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPT-AAPMPGVLIGSKADLREG---SRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAEGLAGV 200
            M+  H+  LMLR+KVV+VGDA VGKT++ QM  S GH+YPKNY+MT  VDF VKQ+++PE +C VELFLFDC GQGVFNKL+  A +++NA+FVCVVFDV NR+SF+SCGRWLQGVRA  PT +AP+PGV+I +K+DLREG   +RAVV+ +EG  FA +NGL YFE SAA + G++APF HMA  FH  YE ++  AEG  G+
Sbjct:   23 MQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATSFHETYEKTIEGAEGEGGL 226          
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: A0A7S2XVJ0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ0_9STRA)

HSP 1 Score: 239 bits (611), Expect = 4.820e-77
Identity = 117/202 (57.92%), Postives = 151/202 (74.75%), Query Frame = 0
Query:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREG---SRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAEGLAG 199
            ME+ HKPLLMLR KVV+VGDA VGK+A+ QM    G  YPKNY+MTT V F VKQ+ +P+ NC VEL+LFDCAGQ +FN+ + N   W+N S+V VV+DV NR+SFQSC +WLQGVR+TR ++  +PGVL+ +K+DLREG   SRA V  +EG  FAQEN L +FE SAA +  V+APF  +A QFH  YE ++++AE L+G
Sbjct:   32 MESAHKPLLMLRCKVVLVGDACVGKSALVQMFHGGGQRYPKNYVMTTGVGFCVKQVNIPDTNCAVELYLFDCAGQSIFNQREQNLKSWENTSYVVVVYDVGNRDSFQSCAKWLQGVRSTRQSSM-IPGVLVANKSDLREGGINSRAAVSDEEGRNFAQENSLEFFETSAAEAKNVDAPFNFIASQFHQKYEQTVQRAEALSG 232          
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: A0A7S3M1Q0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1Q0_9STRA)

HSP 1 Score: 206 bits (523), Expect = 4.840e-64
Identity = 96/195 (49.23%), Postives = 141/195 (72.31%), Query Frame = 0
Query:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGS---RAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMR 192
            ME  HK +++LR K+++VGDA VGKTA+TQ  +S G  YPKNYLMT   +F+VKQ+ +PE N  VELF++DCAGQ +FN+LDLN+ +++NAS V VV++V NR+S  SC +W+ GV+A + +  P+ G  +G+K + R+GS   RA VD  E    A+  G+ YFE SAA + GV+APFQ++A++F+  YE +++
Sbjct:    8 METSHKTMVILRCKLILVGDACVGKTALTQSFVSGGTTYPKNYLMTIGAEFNVKQVTIPETNVIVELFIYDCAGQSIFNQLDLNSKYYENASAVMVVYNVANRDSLLSCNKWVSGVKAIQNSGVPLVGAFVGNKCEFRDGSIDSRAEVDILEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEETVQ 202          
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: A0A225UZA4_9STRA (Intraflagellar transport protein 27 n=6 Tax=Phytophthora TaxID=4783 RepID=A0A225UZA4_9STRA)

HSP 1 Score: 204 bits (519), Expect = 1.470e-63
Identity = 101/194 (52.06%), Postives = 132/194 (68.04%), Query Frame = 0
Query:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGSRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKA 194
            ME  HK   +LR KV +VGDA VGKTA+ Q+L S+GH YPKNY+MT+DV+ S K I +PE N  VEL+LFDCAGQ +FN+LD   VH+  AS   VVFDV N+ESF+SC +W Q VR   P    +PGVL+ +K DLR  +R  +  +E   FA+ N L YFE SA  +SGVEAPF ++A  F+  Y+ + ++A
Sbjct:    7 METTHKSTTVLRCKVAVVGDATVGKTALLQVLKSNGHEYPKNYVMTSDVELSTKSIPIPESNVAVELYLFDCAGQSIFNQLDFGTVHYKGASMALVVFDVNNKESFKSCSKWYQDVRDASPNHN-IPGVLLANKTDLRYNNRDAISTKEAEEFAERNDLKYFECSAQQNSGVEAPFAYIADWFNKKYQTATQRA 199          
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: A0A6H5KZL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZL0_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 3.810e-63
Identity = 97/149 (65.10%), Postives = 123/149 (82.55%), Query Frame = 0
Query:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPT-AAPMPGVLIGSKADLREG---SRAVV 145
            M+  H+  LMLR+KVV+VGDA VGKT++ QM  S GH+YPKNY+MT  VDF VKQ+++PE +C VELFLFDC GQGVFNKL+  A +++NA+FVCVVFDV NR+SF+SCGRWLQGVRA  P+ +AP+PGV+I +K+DLREG   +RAVV
Sbjct:   23 MQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSKSAPLPGVVIANKSDLREGGINARAVV 171          
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: A0A0N7L680_PLAHL (Intraflagellar transport protein 27 homolog n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L680_PLAHL)

HSP 1 Score: 202 bits (513), Expect = 1.190e-62
Identity = 98/194 (50.52%), Postives = 133/194 (68.56%), Query Frame = 0
Query:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGSRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKA 194
            ME  HK   +LR KV IVG+A VGKTA+ Q+L S+GH +PKNY+MT+DV+ S K I +P+ N  VEL+LFDCAGQ +FN+LD   VH+  AS   VVFDV N+ESF+SC +W Q VR   P    +PGVL+ +K DLR  +R  +  +E   FA+ N + +FE SA  ++GVEAPF ++A  FH  Y+A+ ++A
Sbjct:    7 METTHKSTTVLRCKVAIVGEATVGKTAVVQILKSNGHEFPKNYVMTSDVELSTKSISIPDTNVVVELYLFDCAGQSIFNQLDFGTVHYKGASIALVVFDVNNKESFKSCSKWYQDVRDASPNHN-IPGVLLANKTDLRYNNRDAISTKEAEEFAKRNDMKFFECSAQQNAGVEAPFVYIADWFHKKYQATTQRA 199          
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: A0A0W8DPM3_PHYNI (Phosphatidylinositol 4-kinase beta n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DPM3_PHYNI)

HSP 1 Score: 200 bits (509), Expect = 1.060e-61
Identity = 99/185 (53.51%), Postives = 129/185 (69.73%), Query Frame = 0
Query:   10 MLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGSRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKA 194
            +LR KV IVGDA VGKTA+ Q+L S+GH YPKNY+MT+DV+ S K I +P+ N  VEL+LFDCAGQ +FN+LD   VH+  AS   VVFDV N+ESF+SC +W Q VR   P    +PGVL+ +K DLR  +R  +  +E   FA+ N L YFE SA  +SGVEAPF ++A  FH  Y+A+ ++A
Sbjct:   41 VLRCKVAIVGDATVGKTALLQVLKSNGHEYPKNYVMTSDVELSTKSIPIPDTNVVVELYLFDCAGQSIFNQLDFGTVHYKGASMALVVFDVNNKESFKSCSKWYQDVRDASPNHN-IPGVLLANKTDLRYNNRDAISTKEAEEFAKRNDLKYFECSAQQNSGVEAPFAYIADWFHKKYQAATQRA 224          
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: A0A7S1XUM6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUM6_9STRA)

HSP 1 Score: 197 bits (502), Expect = 4.420e-60
Identity = 104/190 (54.74%), Postives = 132/190 (69.47%), Query Frame = 0
Query:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVK--QIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAP-MPGVLIGSKADLRE---GSRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFH 184
            M+    P LMLR KVVIVGDA VGKTAI  M  S+   YP+ Y MTT V+F+VK   +R   VN   EL+LFDCAGQ +FN++  N+ +++NAS+V +V+DV NRESFQSCGRWLQ +R+TRP++ P +PGVL+ +K DLR     SRA V   EG  FA ENGLAYFE SA   +G+  PF H+A  F+
Sbjct:   25 MKTSFVPTLMLRCKVVIVGDACVGKTAIASMFESNLQQYPRKYNMTTTVEFTVKLVPVRAEGVNVAAELYLFDCAGQSIFNQVGTNSKNFENASYVIIVYDVANRESFQSCGRWLQQIRSTRPSSGPPIPGVLLANKIDLRSDMLSSRAEVTESEGRGFAAENGLAYFECSALQGAGINEPFHHIANTFY 214          
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Match: A0A5D6YIH3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YIH3_9STRA)

HSP 1 Score: 194 bits (494), Expect = 8.510e-60
Identity = 96/194 (49.48%), Postives = 132/194 (68.04%), Query Frame = 0
Query:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGSRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKA 194
            ME  HK   +LR KV +VGDA VGKTA+ Q+L SSGH YPKNY  T+DV+  VK + +P+ N  VEL+LFDCAGQ +FN+LD    H+  AS   VVFDV N+ESF+SC +W Q V+   PT   +PGVLI +K DLRE +R  + A++   F + N   YFE SA  ++G+EAPF ++A+ F+  Y+++ ++A
Sbjct:    7 METTHKSTAILRCKVAVVGDATVGKTALLQVLKSSGHEYPKNY--TSDVELCVKSVPIPDSNVIVELYLFDCAGQSIFNQLDFGTSHYKGASLAVVVFDVNNKESFKSCSKWYQDVKDASPTHN-IPGVLIANKTDLRENNRDAISAKDAEDFCERNDFKYFETSAQQNTGIEAPFAYIAEWFYKKYQSAAQRA 197          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353654 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCC9_9STRA8.620e-145100.00IFT27, ras superfamily GTPase n=1 Tax=Tribonema mi... [more]
D7FJQ1_ECTSI1.740e-8561.76IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus s... [more]
A0A7S2XVJ0_9STRA4.820e-7757.92Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3M1Q0_9STRA4.840e-6449.23Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A225UZA4_9STRA1.470e-6352.06Intraflagellar transport protein 27 n=6 Tax=Phytop... [more]
A0A6H5KZL0_9PHAE3.810e-6365.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0N7L680_PLAHL1.190e-6250.52Intraflagellar transport protein 27 homolog n=1 Ta... [more]
A0A0W8DPM3_PHYNI1.060e-6153.51Phosphatidylinositol 4-kinase beta n=12 Tax=Phytop... [more]
A0A7S1XUM6_9STRA4.420e-6054.74Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A5D6YIH3_9STRA8.510e-6049.48Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 38..54
score: 21.61
coord: 58..80
score: 26.47
coord: 13..34
score: 37.35
coord: 124..137
score: 40.51
coord: 161..183
score: 29.34
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 14..186
e-value: 3.7E-11
score: 29.6
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 10..186
e-value: 1.5E-7
score: -4.3
NoneNo IPR availablePANTHERPTHR47979DRAB11-RELATEDcoord: 10..197
NoneNo IPR availablePANTHERPTHR47979:SF7INTRAFLAGELLAR TRANSPORT PROTEIN 27 HOMOLOGcoord: 10..197
NoneNo IPR availablePROSITEPS51419RABcoord: 2..203
score: 17.678003
IPR001806Small GTPaseSMARTSM00174rho_sub_3coord: 15..186
e-value: 1.9E-5
score: -47.7
IPR001806Small GTPasePFAMPF00071Rascoord: 14..183
e-value: 4.6E-32
score: 110.9
IPR001806Small GTPasePROSITEPS51421RAScoord: 3..198
score: 10.652748
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 5..196
e-value: 1.6E-40
score: 140.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 14..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_176contigContig_176:131144..135996 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353654mRNA_16982Tribonema minus UTEX_B_3156 mRNAContig_176 131120..135996 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353654|estExt_Genemark1.C_Ctg_1760013 ID=Trimin1|353654|estExt_Genemark1.C_Ctg_1760013|Name=jgi.p|Trimin1|353654|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=204bp
MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVD
FSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDV
CNRESFQSCGRWLQGVRATRPTAAPMPGVLIGSKADLREGSRAVVDAQEG
ARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAEGLAGV
GGF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase