mRNA_15793 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353588
Unique NamemRNA_15793
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A836CJP2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJP2_9STRA)

HSP 1 Score: 519 bits (1336), Expect = 2.020e-184
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 2
Query:   38 MTSHFDWCPDFELAEADAEQQRHVFDELQRRDDWLLAKRPWLLPGPNLWSAELAAAATEAANLAAEREAMALVLSDISPSISTGVRTLSFILDVMGTRLLEVTEAADSEGVARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD 853
            MTSHFDWCPDFELAEADAEQQRHVFDELQRRDDWLLAKRPWLLPGPNLWSAELAAAATEAANLAAEREAMALVLSDISPSISTGVRTLSFILDVMGTRLLEVTEAADSEGVARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD
Sbjct:    1 MTSHFDWCPDFELAEADAEQQRHVFDELQRRDDWLLAKRPWLLPGPNLWSAELAAAATEAANLAAEREAMALVLSDISPSISTGVRTLSFILDVMGTRLLEVTEAADSEGVARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD 272          
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A835ZEP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP5_9STRA)

HSP 1 Score: 205 bits (522), Expect = 1.250e-59
Identity = 127/247 (51.42%), Postives = 153/247 (61.94%), Query Frame = 2
Query:  224 LAAEREAMALVLSDISPSISTGVRTLSFILDVMGTRLLEVTEAADS------EGVARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSH----QAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD*-EAVSGPLIRDMSAVDFESAEWTGVP 931
            LAAEREAM LVLSDISPS   GV  L++ L+ MG RLLE+   A S         AR  G   V VT+GSA VETP RL  AL  G D  AL  SC  Q AAG SGS++V+ RL+QL M VS     Q + GA RARRT +L+ LPALA E    +    W  A   V+ +  D  +QKA+LIWLSQ+VRPWPVW+ T LC+ AAE G LA L++LMH D  + + GP I+D+S VD  S EW   P
Sbjct:    3 LAAEREAMLLVLSDISPSSKDGVTILAYTLEAMGARLLELVPVARSWRTAYMSVTARQQGAAWVCVTSGSAVVETPARLEMALARGADVPALVKSCDVQRAAGTSGSMEVIHRLRQLGMVVSDGVVLQVLIGATRARRTGVLYRLPALALESGEQVDHQTWTYAGICVLRSAYDEEEQKAVLIWLSQQVRPWPVWYCTRLCHIAAENGRLAALKFLMHKDRGQVLFGPFIQDLSVVDLSSPEWVNAP 249          
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A835YZ94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ94_9STRA)

HSP 1 Score: 186 bits (472), Expect = 4.000e-51
Identity = 127/297 (42.76%), Postives = 157/297 (52.86%), Query Frame = 2
Query:  224 LAAEREAMALVLSDISPSISTGVRTLSFILDVMGTRLLEVTEAADSEGV--------------------------------------------------------ARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSH----QAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD*-EAVSGPLIRDMSAVDFESAEWTGVP 931
            LAAEREAM LVLSDISPS + GV  L++ L+ MG RLLEVTEA +S+                                                          AR  G   V VT+GSA VETP RL  AL  G D  AL  SC  Q AAG SGS++V+ RL+QL M VS     Q + GA  ARRT +L+ LPALA E    +    W  A   V+ +  D  +QKA+LIWLSQ+VRPWPVW+ T LC+ AAE G LA L++LMH D  + + G L++D+S +DF S E    P
Sbjct:    3 LAAEREAMLLVLSDISPSSNGGVTILAYTLEAMGARLLEVTEATESDDARACAPSRSEVVGDGPRRAVLANPQLLESVLSFVGRGHRLYLVPVARSWRTAYMSVTARQQGAAWVCVTSGSAVVETPARLEMALARGADVPALVKSCDVQRAAGTSGSMEVIHRLRQLGMVVSDGVVLQVLIGATCARRTGVLYRLPALALESGEQVDHQTWTYAGICVLRSAYDEEEQKAVLIWLSQQVRPWPVWYCTCLCHTAAENGRLASLKFLMHKDCGQVLFGSLVQDLSVIDFSSPERADAP 299          
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A835ZI44_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI44_9STRA)

HSP 1 Score: 172 bits (437), Expect = 4.600e-46
Identity = 123/298 (41.28%), Postives = 155/298 (52.01%), Query Frame = 2
Query:  212 EAANLAAEREAMALVLSDISPSISTGVRTLSFILDVMGTRLLEVTEAADSEGV--------------------------------------------------------ARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD*-EAVSGPLIRDMSAVDFESAEWTGVPH 934
            EAA+LAAEREAM LVL DI PS  +GVR+L+  +  MGTRL EV EA  S+                                                          A+  G  SV VT G+AAVE PERL  AL CGI+   L  +   Q AAGASGS++VV+RL  L M +S  A+ GA  ARRT ++  L ALA      +TL  W            D  +Q+A LIWLSQ++RPWPVW+ T LC+ AAE G LA L++L+H+D  +A+ GPLI D+SAV+    EWT   H
Sbjct:    2 EAAHLAAEREAMLLVLGDICPSADSGVRSLTCTVQAMGTRLQEVMEAVSSDDARANAGSPSEAEGDGPRGAVLANPQLLASIINFMKCGHWLYLTPVARSWRTAYMSVTAQREGAPSVCVTWGTAAVEAPERLAMALACGINVQRLTRAYFVQNAAGASGSMEVVRRLHGLGMPISDGALIGA--ARRTGVMNRLLALALGSGEQVTLSTWLFVGLCTFSDAYD-GEQRAALIWLSQQMRPWPVWFCTVLCHTAAEKGQLAALKFLIHEDYGQALFGPLIWDLSAVNMRGPEWTAGRH 296          
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A836CP87_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP87_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.270e-45
Identity = 106/228 (46.49%), Postives = 145/228 (63.60%), Query Frame = 2
Query:  368 VARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTL--ALANSCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD*-EAVSGPLIRDMSAVDFESAEWTGVPHGVVEMFRDPEWAEFLIPR----VTGAISLLDAAAMG 1030
            +A+  G+  V  T+  AAVE+P+RL  AL CGI     +L  SC   +AAGASGS++VV+RL  L +RVS   +  A RARRT +L+ LPAL  E    +TL  W    ++++GA  D  + KA+L+WLSQ+VRPWPVW+ T LC+ AA  G LA L++LMHDD  +A+ GPLIRD+SAVD+ S EWT  P    + F+ P +A    P         ++L+DAAA+G
Sbjct:   24 MAQQEGVPWVCATSPPAAVESPQRLEMALACGITVHVPSLHYSCNVFDAAGASGSMEVVRRLHGLGLRVSC-VLPSAARARRTGILYRLPALVQESGDEVTLHTWVLVQASILGAAYDDNELKAVLVWLSQQVRPWPVWYCTLLCHTAARKGRLAALKFLMHDDHGQALFGPLIRDLSAVDWSSPEWTKAPK---QHFKWPSFAFDDEPEFHQYANALLTLMDAAAVG 247          
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A836CDJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDJ7_9STRA)

HSP 1 Score: 159 bits (402), Expect = 7.430e-42
Identity = 93/188 (49.47%), Postives = 119/188 (63.30%), Query Frame = 2
Query:  371 ARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD*-EAVSGPLIRDMSAVDFESAEWTGVP 931
            AR  G+  V VT+GSAAVETPER   AL CGI   AL NS  AQ AAGASGS++V++ L +L +  S   +  A RARRT +L+  P LA ER++ + +  W       +    +  QQ+A LIWLSQ+VRP PVW+ + LC  AAE G LA L++LMHDD  +A+ GPLI D   +DFES EW   P
Sbjct:    5 ARQQGVPWVCVTSGSAAVETPERQEMALACGISVPALTNSSDAQCAAGASGSMEVIRHLHRLGVPTSDAVLFSAARARRTGILYRFPVLARERNVQVKMSTWMAVYERFLSDSYNDEQQRAALIWLSQQVRPLPVWYCSSLCVTAAENGQLAALKFLMHDDHGQALFGPLIPDSLVIDFESPEWINAP 192          
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A835YUZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ6_9STRA)

HSP 1 Score: 152 bits (383), Expect = 6.430e-39
Identity = 99/220 (45.00%), Postives = 129/220 (58.64%), Query Frame = 2
Query:  374 RPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD*-EAVSGPLIRDMSAVDFESAEWTGVPHGVVEMFRDPEWAEFLIPRVTGAISLLDAAAMG 1030
            R   +  V VT G AAVETPERL  AL  GID   L ++ +AQEAAGASGS++V+ RL  L M +S  A+ GA  AR    L+ L  LA  R++ + L+ W      VI    D  Q+ A L+WLS++VRPWPVW+ T+LC++AA  G  A L+Y M+ D  +AV GPL+RD+S VDF   EW   P      FR   W     P     +SL+D AA+G
Sbjct:  132 RQQSVPCVCVTVGPAAVETPERLEMALEHGIDVPILTSTYSAQEAAGASGSMEVILRLCHLGMPISCAALLGAACARHIGTLYRLCTLAQRRNVLVRLETWTALHERVIHCSHDDEQRLAALVWLSRQVRPWPVWFCTYLCHSAANGGRQAALKYFMNKDRGQAVYGPLVRDLSVVDFGCLEWRDAP----ATFR---WCLGSRP----LLSLMDEAAIG 340          
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A835YNS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNS1_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.770e-27
Identity = 86/221 (38.91%), Postives = 110/221 (49.77%), Query Frame = 2
Query:  371 ARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPALAAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRTFLCYAAAEAGHLAILQYLMHDD*-EAVSGPLIRDMSAVDFESAEWTGVPHGVVEMFRDPEWAEFLIPRVTGAISLLDAAAMG 1030
            AR  G+  V VT  +A  E P RL   L CG+   A   S   +EAAGASGS +V++R++QL M  +                     +AAE    +TL  W      ++    D AQQ+A LIWLSQ  RPWPVW+ T LC+ AAE G LA L++LM DD  +A+ GPLI D S VD    EW   P              F   RV    +L+D AA+G
Sbjct:   77 ARRQGVPWVCVTAAAAVAEAPARLEMGLACGVRLPARGGSFDVEEAAGASGSTEVIRRMRQLGMSAA--------------------GVAAECGEHMTLQTWIDLVPHILCDAYDGAQQEAALIWLSQHARPWPVWYCTHLCFTAAENGQLAALKFLMRDDRGQALFGPLIPDPSVVDTAGPEWRHAPG-----------YSFEHNRVGYQFTLMDKAAVG 266          
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A836CJH5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJH5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.600e-22
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2
Query:  887 MSAVDFESAEWTGVPHGVVEMFRDPEWAEFLIPRVTGAISLLDAAAMG 1030
            MSAVDFESAEWTGVPHGVVEMFRDPEWAEFLIPRVTGAISLLDAAAMG
Sbjct:    1 MSAVDFESAEWTGVPHGVVEMFRDPEWAEFLIPRVTGAISLLDAAAMG 48          
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Match: A0A836CD13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD13_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 8.890e-13
Identity = 56/112 (50.00%), Postives = 69/112 (61.61%), Query Frame = 2
Query:  320 MGTRLLEVTEAADSEGVARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALANSCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPALAAERSL 655
            MG+RL EVTEAA+ +   +P  +L           ETPERL  AL CGI   AL  S +AQ AAGASGS++V+QRL Q  M +S+  + GA  ARRT  L+ LPALA E  L
Sbjct:    1 MGSRLAEVTEAANIDH--KPETVL-----------ETPERLEMALACGISVPAL-TSYSAQHAAGASGSMEVIQRLLQRGMPISNAVLVGAASARRTGTLYRLPALALEHGL 98          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353588 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A836CJP2_9STRA2.020e-184100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZEP5_9STRA1.250e-5951.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZ94_9STRA4.000e-5142.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZI44_9STRA4.600e-4641.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CP87_9STRA1.270e-4546.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDJ7_9STRA7.430e-4249.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YUZ6_9STRA6.430e-3945.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YNS1_9STRA1.770e-2738.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJH5_9STRA1.600e-22100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CD13_9STRA8.890e-1350.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_172contigContig_172:61826..63144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353588|estExt_Genemark1.C_Ctg_1720009
Hectar predicted targeting categoryother localisation
TranscriptId353910
TrackFilteredModels1
ProteinId353588
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353588gene_15793Tribonema minus UTEX_B_3156 geneContig_172 61826..63144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353588Trimin1|353588|estExt_Genemark1.C_Ctg_1720009Tribonema minus UTEX_B_3156 polypeptideContig_172 61863..62969 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15793_1exon_15793_1Tribonema minus UTEX_B_3156 exonContig_172 61826..62016 +
exon_15793_2exon_15793_2Tribonema minus UTEX_B_3156 exonContig_172 62136..62326 +
exon_15793_3exon_15793_3Tribonema minus UTEX_B_3156 exonContig_172 62496..63144 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_15793UTR5_15793Tribonema minus UTEX_B_3156 five_prime_UTRContig_172 61826..61862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15793CDS_15793Tribonema minus UTEX_B_3156 CDSContig_172 61863..62016 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15793UTR3_15793Tribonema minus UTEX_B_3156 three_prime_UTRContig_172 62970..63144 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15793 ID=mRNA_15793|Name=jgi.p|Trimin1|353588|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1031bp|location=Sequence derived from alignment at Contig_172:61826..63144+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGAGAGACAGAGAGAGAGAGAGCAGCGTCTAGCTGCCATGACGTCTCACT
TTGATTGGTGTCCCGACTTCGAGCTTGCTGAAGCTGACGCCGAACAGCAA
CGCCATGTCTTCGATGAGCTGCAAAGGAGGGATGACTGGCTTCTTGCCAA
GAGACCATGGCTGCTGCCAGGGCCCAACCTGTGGTCCGCAGAGCTCGCAG
CGGCGGCGACGGAGGCGGCCAACCTGGCAGCTGAGAGGGAGGCCATGGCA
CTCGTGTTGAGCGACATAAGCCCTTCCATAAGCACTGGTGTGCGGACCCT
GTCTTTCATTCTAGACGTCATGGGGACAAGACTGCTGGAGGTGACGGAGG
CGGCAGACAGCGAGGGTGTTGCCAGGCCGAGTGGCATGTTGAGCGTGTTC
GTCACCACGGGGTCAGCCGCAGTGGAGACACCCGAGCGGCTGGGGAGCGC
GCTGCGGTGCGGCATCGACACGTTGGCCCTGGCAAACTCCTGCGCCGCGC
AAGAGGCGGCGGGCGCATCGGGGTCAGTACAGGTCGTGCAGCGCCTGCAG
CAACTCAGCATGAGGGTTTCGCATCAGGCCATGCGCGGCGCGATACGCGC
GCGGCGCACGAACCTTCTCTTCGAACTGCCCGCGCTCGCTGCGGAGCGCA
GCCTGCCGCTGACGCTCGACGCGTGGGCGCAGGCCGCATCCGCCGTCATC
GGCGCTGGGCGTGATGTGGCGCAGCAGAAGGCTTTGCTCATCTGGCTGTC
GCAGCGCGTGCGACCATGGCCTGTGTGGTGGCGCACGTTCCTGTGCTACG
CCGCAGCGGAGGCGGGCCACCTCGCCATACTCCAGTACCTCATGCACGAC
GACTGAGAGGCAGTCTCTGGTCCCCTCATACGCGATATGTCGGCCGTCGA
CTTTGAGAGCGCAGAGTGGACCGGCGTACCCCACGGTGTGGTCGAAATGT
TCCGCGACCCTGAGTGGGCCGAATTCCTTATCCCACGTGTCACAGGCGCT
ATCAGTCTGCTTGACGCGGCTGCGATGGGCG
back to top

protein sequence of jgi.p|Trimin1|353588

>Trimin1|353588|estExt_Genemark1.C_Ctg_1720009 ID=Trimin1|353588|estExt_Genemark1.C_Ctg_1720009|Name=jgi.p|Trimin1|353588|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=273bp
MTSHFDWCPDFELAEADAEQQRHVFDELQRRDDWLLAKRPWLLPGPNLWS
AELAAAATEAANLAAEREAMALVLSDISPSISTGVRTLSFILDVMGTRLL
EVTEAADSEGVARPSGMLSVFVTTGSAAVETPERLGSALRCGIDTLALAN
SCAAQEAAGASGSVQVVQRLQQLSMRVSHQAMRGAIRARRTNLLFELPAL
AAERSLPLTLDAWAQAASAVIGAGRDVAQQKALLIWLSQRVRPWPVWWRT
FLCYAAAEAGHLAILQYLMHDD*
back to top

mRNA from alignment at Contig_172:61826..63144+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15793 ID=mRNA_15793|Name=jgi.p|Trimin1|353588|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1319bp|location=Sequence derived from alignment at Contig_172:61826..63144+ (Tribonema minus UTEX_B_3156 )
GGAGAGACAGAGAGAGAGAGAGCAGCGTCTAGCTGCCATGACGTCTCACT TTGATTGGTGTCCCGACTTCGAGCTTGCTGAAGCTGACGCCGAACAGCAA CGCCATGTCTTCGATGAGCTGCAAAGGAGGGATGACTGGCTTCTTGCCAA GAGACCATGGCTGCTGCCAGGGCCCAACCTGTGGTCCGCAGGTGTGTCAA AGGATAGAGACGTCAGAGTATTCGGTGTGCCTAGCATCCTCATGGCTTTT CTTCGTACATCGTCACTTACTTGCTTCCCTTTCCCTCGCACCTGCCATAT TCATGTGCAGAGCTCGCAGCGGCGGCGACGGAGGCGGCCAACCTGGCAGC TGAGAGGGAGGCCATGGCACTCGTGTTGAGCGACATAAGCCCTTCCATAA GCACTGGTGTGCGGACCCTGTCTTTCATTCTAGACGTCATGGGGACAAGA CTGCTGGAGGTGACGGAGGCGGCAGACAGCGAGGGTGTTGCCAGGCCGAG TGTCCGCTCACGCAGCGAAGCTGGCGGTGAGGGTGCCGGCCGGCCGCATT GGCGAATCGGCAGCTGCTGGAGTCAATATTCGGCTTCATGGGTGCGGCCA CTTGCTCTACGTGGCGCCAGTCGCGCGCTCATGGCGCACGGCATACATGT CCATCACGGCAAAATTGCAGGGCATGTTGAGCGTGTTCGTCACCACGGGG TCAGCCGCAGTGGAGACACCCGAGCGGCTGGGGAGCGCGCTGCGGTGCGG CATCGACACGTTGGCCCTGGCAAACTCCTGCGCCGCGCAAGAGGCGGCGG GCGCATCGGGGTCAGTACAGGTCGTGCAGCGCCTGCAGCAACTCAGCATG AGGGTTTCGCATCAGGCCATGCGCGGCGCGATACGCGCGCGGCGCACGAA CCTTCTCTTCGAACTGCCCGCGCTCGCTGCGGAGCGCAGCCTGCCGCTGA CGCTCGACGCGTGGGCGCAGGCCGCATCCGCCGTCATCGGCGCTGGGCGT GATGTGGCGCAGCAGAAGGCTTTGCTCATCTGGCTGTCGCAGCGCGTGCG ACCATGGCCTGTGTGGTGGCGCACGTTCCTGTGCTACGCCGCAGCGGAGG CGGGCCACCTCGCCATACTCCAGTACCTCATGCACGACGACTGAGAGGCA GTCTCTGGTCCCCTCATACGCGATATGTCGGCCGTCGACTTTGAGAGCGC AGAGTGGACCGGCGTACCCCACGGTGTGGTCGAAATGTTCCGCGACCCTG AGTGGGCCGAATTCCTTATCCCACGTGTCACAGGCGCTATCAGTCTGCTT GACGCGGCTGCGATGGGCG
back to top

Coding sequence (CDS) from alignment at Contig_172:61826..63144+

>mRNA_15793 ID=mRNA_15793|Name=jgi.p|Trimin1|353588|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=819bp|location=Sequence derived from alignment at Contig_172:61826..63144+ (Tribonema minus UTEX_B_3156 )
ATGACGTCTCACTTTGATTGGTGTCCCGACTTCGAGCTTGCTGAAGCTGA
CGCCGAACAGCAACGCCATGTCTTCGATGAGCTGCAAAGGAGGGATGACT
GGCTTCTTGCCAAGAGACCATGGCTGCTGCCAGGGCCCAACCTGTGGTCC
GCAGAGCTCGCAGCGGCGGCGACGGAGGCGGCCAACCTGGCAGCTGAGAG
GGAGGCCATGGCACTCGTGTTGAGCGACATAAGCCCTTCCATAAGCACTG
GTGTGCGGACCCTGTCTTTCATTCTAGACGTCATGGGGACAAGACTGCTG
GAGGTGACGGAGGCGGCAGACAGCGAGGGTGTTGCCAGGCCGAGTGGCAT
GTTGAGCGTGTTCGTCACCACGGGGTCAGCCGCAGTGGAGACACCCGAGC
GGCTGGGGAGCGCGCTGCGGTGCGGCATCGACACGTTGGCCCTGGCAAAC
TCCTGCGCCGCGCAAGAGGCGGCGGGCGCATCGGGGTCAGTACAGGTCGT
GCAGCGCCTGCAGCAACTCAGCATGAGGGTTTCGCATCAGGCCATGCGCG
GCGCGATACGCGCGCGGCGCACGAACCTTCTCTTCGAACTGCCCGCGCTC
GCTGCGGAGCGCAGCCTGCCGCTGACGCTCGACGCGTGGGCGCAGGCCGC
ATCCGCCGTCATCGGCGCTGGGCGTGATGTGGCGCAGCAGAAGGCTTTGC
TCATCTGGCTGTCGCAGCGCGTGCGACCATGGCCTGTGTGGTGGCGCACG
TTCCTGTGCTACGCCGCAGCGGAGGCGGGCCACCTCGCCATACTCCAGTA
CCTCATGCACGACGACTGA
back to top