mRNA_15356 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|353576 vs. uniprot
Match: A0A835ZAG9_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAG9_9STRA) HSP 1 Score: 1175 bits (3039), Expect = 0.000e+0 Identity = 704/704 (100.00%), Postives = 704/704 (100.00%), Query Frame = 3
Query: 66 MGNNSSSSASSGFDAAATGDTRGLLKHLKQASERKDAQLPSHNDDDDSWTATAPPCGSPYAKIKKKASAINMVNEEGQTMLCVAALHGQARVVKLLLSLGARVDIPDDTNFTALHYAADGGHLLKDGAAVGARDGDWRTPLHLAVQGQAPNTVALLLQNGASTSVADLEGASPLQLACQFSRGAAEIAEATAALAINEALTVMYIMLVEAPADSAEAATALAIVKALVRTGGADVNHADDSSRTSLHHAAAAGMAAALGVLLEAGGECDMRDCMHQSPLFYACRHGHAAVAQRLCAAGAAVNTQDFKARDSXXXXXXXXXXXXXXRVLLKYGADPRPRNSAGLSAEDLVGEPNVEWQPPPLPQVGDMTTSADGNDAAQHAGGASPQTRQHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAITHSVSCDAAAVSMLQMLRRRSAQLELEERQSGSSALNVVQAYGSLEEMAARIEKQLDGNTCSSATSAAAAGGADGAAFAFGVEPPPSRAVRFSSDVSEKIIYSEWQEALICSCRGEWAQEHEDGGDVHGLIEFVQELYKGVEVVIKKDSWFPNKGRHGILFSEDEGHTLSWLETGGSLKVQQVPSRFLVDLAELPHKKGALKLRYRAKSTGTQEKTVIFEQSRVENFSRFKTGLKALVRLNSDFVQ 2177
MGNNSSSSASSGFDAAATGDTRGLLKHLKQASERKDAQLPSHNDDDDSWTATAPPCGSPYAKIKKKASAINMVNEEGQTMLCVAALHGQARVVKLLLSLGARVDIPDDTNFTALHYAADGGHLLKDGAAVGARDGDWRTPLHLAVQGQAPNTVALLLQNGASTSVADLEGASPLQLACQFSRGAAEIAEATAALAINEALTVMYIMLVEAPADSAEAATALAIVKALVRTGGADVNHADDSSRTSLHHAAAAGMAAALGVLLEAGGECDMRDCMHQSPLFYACRHGHAAVAQRLCAAGAAVNTQDFKARDSXXXXXXXXXXXXXXRVLLKYGADPRPRNSAGLSAEDLVGEPNVEWQPPPLPQVGDMTTSADGNDAAQHAGGASPQTRQHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAITHSVSCDAAAVSMLQMLRRRSAQLELEERQSGSSALNVVQAYGSLEEMAARIEKQLDGNTCSSATSAAAAGGADGAAFAFGVEPPPSRAVRFSSDVSEKIIYSEWQEALICSCRGEWAQEHEDGGDVHGLIEFVQELYKGVEVVIKKDSWFPNKGRHGILFSEDEGHTLSWLETGGSLKVQQVPSRFLVDLAELPHKKGALKLRYRAKSTGTQEKTVIFEQSRVENFSRFKTGLKALVRLNSDFVQ
Sbjct: 1 MGNNSSSSASSGFDAAATGDTRGLLKHLKQASERKDAQLPSHNDDDDSWTATAPPCGSPYAKIKKKASAINMVNEEGQTMLCVAALHGQARVVKLLLSLGARVDIPDDTNFTALHYAADGGHLLKDGAAVGARDGDWRTPLHLAVQGQAPNTVALLLQNGASTSVADLEGASPLQLACQFSRGAAEIAEATAALAINEALTVMYIMLVEAPADSAEAATALAIVKALVRTGGADVNHADDSSRTSLHHAAAAGMAAALGVLLEAGGECDMRDCMHQSPLFYACRHGHAAVAQRLCAAGAAVNTQDFKARDSXXXXXXXXXXXXXXRVLLKYGADPRPRNSAGLSAEDLVGEPNVEWQPPPLPQVGDMTTSADGNDAAQHAGGASPQTRQHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAITHSVSCDAAAVSMLQMLRRRSAQLELEERQSGSSALNVVQAYGSLEEMAARIEKQLDGNTCSSATSAAAAGGADGAAFAFGVEPPPSRAVRFSSDVSEKIIYSEWQEALICSCRGEWAQEHEDGGDVHGLIEFVQELYKGVEVVIKKDSWFPNKGRHGILFSEDEGHTLSWLETGGSLKVQQVPSRFLVDLAELPHKKGALKLRYRAKSTGTQEKTVIFEQSRVENFSRFKTGLKALVRLNSDFVQ 704
BLAST of jgi.p|Trimin1|353576 vs. uniprot
Match: A0A835Z6W7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6W7_9STRA) HSP 1 Score: 201 bits (511), Expect = 4.230e-56 Identity = 101/162 (62.35%), Postives = 121/162 (74.69%), Query Frame = 3
Query: 1689 PPPSRAVRFSSDVSEKIIYSEWQEALICSCRGEWAQEHEDGGDVHGLIEFVQELYKGVEVVIKKDSWFPNKGRHGILFSEDEGHTLSWLETGGSLKVQQVPSRFLVDLAELPHKKGALKLRYRAKSTGTQEKTVIFEQSRVENFSRFKTGLKALVRLNSDFV 2174
P ++ V F+S V K +YSEWQEA+I S R + + L FVQ+LYKGVEV IKKDSW P G+ GILFSEDEGH+LSWLETGGSLKV QVPSR+LVD+AE+P + GAL+LRYRA+STGTQEK+VIFE RV++FSRF+ GL LV L SDF
Sbjct: 45 PHKAKVVHFASAVDVKTVYSEWQEAIINSFRVDAGNGKDAEASDMQLYAFVQDLYKGVEVTIKKDSWLPRAGKRGILFSEDEGHSLSWLETGGSLKVHQVPSRYLVDVAEVPREGGALRLRYRARSTGTQEKSVIFEHPRVDSFSRFRRGLSTLVNLQSDFA 206
BLAST of jgi.p|Trimin1|353576 vs. uniprot
Match: S9YZ10_CAMFR (Ankyrin repeat domain-containing protein 27 n=1 Tax=Camelus ferus TaxID=419612 RepID=S9YZ10_CAMFR) HSP 1 Score: 68.9 bits (167), Expect = 2.510e-8 Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = 3
Query: 228 PCGSPYAKIKKKASAINMVNEEGQTMLCVAALHGQARVVKLLLSLGARVDIPDDTNFTALHYAADGGHLLKDGAAVGARDGDWRTPLHLAVQGQAPNTVALLLQNGAS 551
P AKI ++N+ N++G + L VAALHG+A +V LLL GARV D + LH A GH + GA++ A + T LH AV + V LLL +GAS
Sbjct: 523 PAQKKLAKIPASGLSVNVTNQDGSSPLHVAALHGRADLVLLLLKHGARVGARDASQAVPLHLACQNGHF-QHGASINAANSKGNTALHEAVIEKHVFVVELLLLHGAS 629
BLAST of jgi.p|Trimin1|353576 vs. uniprot
Match: A0A834B4B7_9CHIR (Ankyrin repeat domain 55 n=1 Tax=Phyllostomus discolor TaxID=89673 RepID=A0A834B4B7_9CHIR) HSP 1 Score: 67.0 bits (162), Expect = 8.470e-8 Identity = 85/306 (27.78%), Postives = 118/306 (38.56%), Query Frame = 3
Query: 102 FDAAATGDTRGLLKHLKQASERKDAQLPSHNDDDDSWTATAPPCGSPYAKIK---KKASAINMVNEEGQTMLCVAALHGQARVVKLLLSLGARVDIPDDTNFTALHYAA--DGGHLL------KDGAAVGARDGDWRTPLHLAVQGQAPNTVALLLQNGASTSVADLEGASPLQLACQFSRGAAEIAEATAALAINEALTVMYIMLVEAPA-------------DSAEAATALAIVKALVRTGGADVNHADDSSRTSLHHAAAAGMAAALGVLLEAGGECDMRDCMHQSPLFYACRHGHAAVAQRL 947
+ AAA+GD L A+ R+D + D + CG ++ K + +N + G+T LC+AA G LL GA+ IPD LH A LL V +D + PLH A P LLL+ GA ++AD + + L A Q N L + + + PA A AA ++ L R D+ D RT LH AAAAG AA + LL+ G + +RD + L YA R GH A + L
Sbjct: 26 YQAAASGDVGALT-----AAIREDPSVLECCDGEGCTPLMHAVCGRQADTVRLLLKMGADLNAQDARGRTSLCLAAYLGWLDGCVSLLRNGAKHSIPDKNGRLPLHAATAEPDARLLAVLVQQSSLGEVNHQDNEGMAPLHWAAFHNQPQHAQLLLRKGADPALADKDFKTALHWAVQSG---------------NRTLCALILSHRQGPALVNCDDESGKTCVHMAAAAGFSDVLAELARVPACDLQALDVDDRTPLHWAAAAGQAACVQALLDLGVDDGLRDVHGSTALAYALRGGHLACVRLL 311
BLAST of jgi.p|Trimin1|353576 vs. uniprot
Match: A0A6J2MRC8_9CHIR (LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 55 n=1 Tax=Phyllostomus discolor TaxID=89673 RepID=A0A6J2MRC8_9CHIR) HSP 1 Score: 67.0 bits (162), Expect = 1.120e-7 Identity = 85/306 (27.78%), Postives = 118/306 (38.56%), Query Frame = 3
Query: 102 FDAAATGDTRGLLKHLKQASERKDAQLPSHNDDDDSWTATAPPCGSPYAKIK---KKASAINMVNEEGQTMLCVAALHGQARVVKLLLSLGARVDIPDDTNFTALHYAA--DGGHLL------KDGAAVGARDGDWRTPLHLAVQGQAPNTVALLLQNGASTSVADLEGASPLQLACQFSRGAAEIAEATAALAINEALTVMYIMLVEAPA-------------DSAEAATALAIVKALVRTGGADVNHADDSSRTSLHHAAAAGMAAALGVLLEAGGECDMRDCMHQSPLFYACRHGHAAVAQRL 947
+ AAA+GD L A+ R+D + D + CG ++ K + +N + G+T LC+AA G LL GA+ IPD LH A LL V +D + PLH A P LLL+ GA ++AD + + L A Q N L + + + PA A AA ++ L R D+ D RT LH AAAAG AA + LL+ G + +RD + L YA R GH A + L
Sbjct: 94 YQAAASGDVGALT-----AAIREDPSVLECCDGEGCTPLMHAVCGRQADTVRLLLKMGADLNAQDARGRTSLCLAAYLGWLDGCVSLLRNGAKHSIPDKNGRLPLHAATAEPDARLLAVLVQQSSLGEVNHQDNEGMAPLHWAAFHNQPQHAQLLLRKGADPALADKDFKTALHWAVQSG---------------NRTLCALILSHRQGPALVNCDDESGKTCVHMAAAAGFSDVLAELARVPACDLQALDVDDRTPLHWAAAAGQAACVQALLDLGVDDGLRDVHGSTALAYALRGGHLACVRLL 379
BLAST of jgi.p|Trimin1|353576 vs. uniprot
Match: UPI00187A446B (ankyrin repeat domain-containing protein 55 n=1 Tax=Sturnira hondurensis TaxID=192404 RepID=UPI00187A446B) HSP 1 Score: 64.7 bits (156), Expect = 5.060e-7 Identity = 84/306 (27.45%), Postives = 119/306 (38.89%), Query Frame = 3
Query: 102 FDAAATGDTRGLLKHLKQASERKDAQLPSHNDDDDSWTATAPPCGSPYAKIK---KKASAINMVNEEGQTMLCVAALHGQARVVKLLLSLGARVDIPDDTNFTALHYAA--DGGHLL------KDGAAVGARDGDWRTPLHLAVQGQAPNTVALLLQNGASTSVADLEGASPLQLACQFSRGAAEIAEATAALAINEALTVMYIMLVEAPA------DSAEAATALA-------IVKALVRTGGADVNHADDSSRTSLHHAAAAGMAAALGVLLEAGGECDMRDCMHQSPLFYACRHGHAAVAQRL 947
+ AAA+GD R L + R+D + D + G ++ K + IN + G+T LC+AA G LL GA+ IPD LH A LL V +D + PLH A P LLL+ GA ++AD + + L A Q N AL + + + P+ +S + LA ++ L R ++ D RT LH AAAAG A + LL+ G + +RD + L YA R H A AQ L
Sbjct: 133 YQAAASGDVRALTTAI-----REDPSILECCDGEGCTPLMHAVSGRQADTVRLLLKMGADINAQDARGRTSLCLAAYLGWLEGCVSLLRNGAKHSIPDKNGRLPLHAATAEPDARLLAVLVRRSSLGEVNHQDNEGMAPLHWAAFHSQPQHAQLLLRKGADPALADKDFKTALHWAVQSG---------------NRALCTLILSHRQGPSIVNCDDESGKTCVHLAAAAGFSDVLAELARVPECNLQALDVEDRTPLHWAAAAGKEACVQALLDLGVDSSLRDVHDSTALAYALRGRHLACAQLL 418
BLAST of jgi.p|Trimin1|353576 vs. uniprot
Match: A0A2M6V061_9BURK (Uncharacterized protein n=1 Tax=Limnohabitans sp. G3-2 TaxID=1100711 RepID=A0A2M6V061_9BURK) HSP 1 Score: 60.8 bits (146), Expect = 1.570e-6 Identity = 42/115 (36.52%), Postives = 62/115 (53.91%), Query Frame = 3
Query: 285 NEEGQTMLCVAALHGQARVVKLLLSLGARVDIPDDTNFTALHYAADGGH------LLKDGAAVGARDGDWRTPLHLAVQGQAPNTVALLLQNGASTSVADLEGASPLQLACQFSR 611
N++ ++ L +AAL G +VK L+ A V+ T +TALHYAA GGH LL+ A + A + TPL +A +P +V LL+Q GA +V + G + L A + R
Sbjct: 91 NDKDESPLMLAALKGHLALVKKLVERDADVN---KTGWTALHYAASGGHVQVIDFLLEHSAYIDAESPNGTTPLMMAAMYGSPESVKLLIQAGADLNVKNTVGMTALDFAVRGKR 202
BLAST of jgi.p|Trimin1|353576 vs. uniprot
Match: A0A368L7N7_9BURK (Ankyrin repeat domain-containing protein n=2 Tax=Parvibium lacunae TaxID=1888893 RepID=A0A368L7N7_9BURK) HSP 1 Score: 60.1 bits (144), Expect = 4.450e-6 Identity = 42/116 (36.21%), Postives = 62/116 (53.45%), Query Frame = 3
Query: 276 NMVNEEGQTMLCVAALHGQARVVKLLLSLGARVDIPDDTNFTALHYAADGGH------LLKDGAAVGARDGDWRTPLHLAVQGQAPNTVALLLQNGASTSVADLEGASPLQLACQF 605
N + G+T+L +AALHG+ + + LL GA+++ P +TALHYAA G LL A + A + TPL +A + TV LL+ GA SV + +G S + A +F
Sbjct: 149 NYRSPAGETVLMLAALHGEYNLCQALLKRGAKLNQP---GWTALHYAATSGQDNIIRLLLDADAYIDAESPNQTTPLMMAARSGNRATVRLLIDLGADPSVVNQQGYSAARFAHEF 261
BLAST of jgi.p|Trimin1|353576 vs. uniprot
Match: A0A7S3A7H3_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A7H3_9RHOD) HSP 1 Score: 61.2 bits (147), Expect = 6.300e-6 Identity = 59/177 (33.33%), Postives = 83/177 (46.89%), Query Frame = 3
Query: 420 DGGHLLKD---GAAVGARDGDWRTPLHLAVQGQAPNTVALLLQNGASTSVADLEGASPLQLACQFSRGAAEIAEATAALAINEALTVMYIMLVEAPADSAEAATALAIVKALVRT-----GGADVNHADDSSRTSLHHAAAAGMAAALGVLLEAGGECDMRDCMHQSPLFYACRHGH 926
D +LK+ GA+ D D RTPLHLAV+ P TVA+LL+ GA D G SPL+ A + R EI E ++ A V + + S+ A +L GGA VN +D+ +RT LH+A+A G +LL GG+ +D +P+ A H
Sbjct: 508 DSASVLKELDRGASPNFSDYDMRTPLHLAVEEDHPETVAILLERGARYDRKDRWGQSPLRAAVKLQRN--EILEIFKKNGVDAAELVAF----DPDESSSRELLAFCANGSLPEVRQSLMGGAFVNCSDELNRTPLHYASAKGDTEISELLLLNGGDFTAKDLKGHTPVDVAVERKH 678
BLAST of jgi.p|Trimin1|353576 vs. uniprot
Match: A0A6H5JM51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM51_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 7.800e-6 Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 3
Query: 300 TMLCVAALHGQARVVKLLLSLGARVDIP---DDTNFTALHYAAD------GGHL------LKDGAAVGARDGDWRTPLHLAVQGQAPNTVALLLQNGASTSVADLEGASPLQL 593
T+LC AA+ GQ+ V+++L++ GA D+ D A H A+ G HL L+ GA VGA++ + TPLH+A P V+LLL+ GA T+ D + +P Q+
Sbjct: 12 TVLCSAAVQGQSEVIRVLVAAGADTDLKVCRDGRKGGATHDASPLLLAVVGEHLEAARVLLEGGAEVGAKNLNGLTPLHVACLKPNPEMVSLLLRWGADTNARDRKKRTPEQI 124 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353576 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15356 ID=mRNA_15356|Name=jgi.p|Trimin1|353576|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2192bp|location=Sequence derived from alignment at Contig_171:205088..212521- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCGTGCGATAGCCCCTGCGCAACAGGCACGGCGCCACCGCTGCTGCGCCGback to top protein sequence of jgi.p|Trimin1|353576 >Trimin1|353576|estExt_Genemark1.C_Ctg_1710032 ID=Trimin1|353576|estExt_Genemark1.C_Ctg_1710032|Name=jgi.p|Trimin1|353576|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=705bp MGNNSSSSASSGFDAAATGDTRGLLKHLKQASERKDAQLPSHNDDDDSWTback to top mRNA from alignment at Contig_171:205088..212521- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15356 ID=mRNA_15356|Name=jgi.p|Trimin1|353576|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7434bp|location=Sequence derived from alignment at Contig_171:205088..212521- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_171:205088..212521- >mRNA_15356 ID=mRNA_15356|Name=jgi.p|Trimin1|353576|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2115bp|location=Sequence derived from alignment at Contig_171:205088..212521- (Tribonema minus UTEX_B_3156 )back to top |