mRNA_15236 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353552
Unique NamemRNA_15236
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|353552 vs. uniprot
Match: A0A835ZCP2_9STRA (Putative serine esterase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCP2_9STRA)

HSP 1 Score: 694 bits (1790), Expect = 5.330e-251
Identity = 377/377 (100.00%), Postives = 377/377 (100.00%), Query Frame = 1
Query:    1 MRSGARTAREIRDAIARNPGLTHISVVGNSLGGLYSRYAVRELHTPDEPGGAIAGLQPVTFMVSALSADAAARAPLSRTIATPHLGVRRYTWGITQYPKFMFPLAKILFGQSGKDLFLTDAEERAAAAAAGVGEGVVGGGEPEVPLLMKMASDEEFLAPLRTFKRRRAYANMRGDFMVTLRTAAIEPHPIKAECQSQRAHEWLWGRASGVIVEQXXXXXXXXXXXXXXXXXXDDSKPVAIGADSAEQVEEQEEAMARALNALGWTKASAPRADDGIPDSACSLSVVSRRWRCREIAAVARATPPPLSYNAHAGADASIRVIVDFGAVLVPGHHNSICAHSANPWTRLVNKAGRNIMDHAAAYLLDIEGQGGADAAVS 1131
            MRSGARTAREIRDAIARNPGLTHISVVGNSLGGLYSRYAVRELHTPDEPGGAIAGLQPVTFMVSALSADAAARAPLSRTIATPHLGVRRYTWGITQYPKFMFPLAKILFGQSGKDLFLTDAEERAAAAAAGVGEGVVGGGEPEVPLLMKMASDEEFLAPLRTFKRRRAYANMRGDFMVTLRTAAIEPHPIKAECQSQRAHEWLWGRASGVIVEQXXXXXXXXXXXXXXXXXXDDSKPVAIGADSAEQVEEQEEAMARALNALGWTKASAPRADDGIPDSACSLSVVSRRWRCREIAAVARATPPPLSYNAHAGADASIRVIVDFGAVLVPGHHNSICAHSANPWTRLVNKAGRNIMDHAAAYLLDIEGQGGADAAVS
Sbjct:    1 MRSGARTAREIRDAIARNPGLTHISVVGNSLGGLYSRYAVRELHTPDEPGGAIAGLQPVTFMVSALSADAAARAPLSRTIATPHLGVRRYTWGITQYPKFMFPLAKILFGQSGKDLFLTDAEERAAAAAAGVGEGVVGGGEPEVPLLMKMASDEEFLAPLRTFKRRRAYANMRGDFMVTLRTAAIEPHPIKAECQSQRAHEWLWGRASGVIVEQXXXXXXXXXXXXXXXXXXDDSKPVAIGADSAEQVEEQEEAMARALNALGWTKASAPRADDGIPDSACSLSVVSRRWRCREIAAVARATPPPLSYNAHAGADASIRVIVDFGAVLVPGHHNSICAHSANPWTRLVNKAGRNIMDHAAAYLLDIEGQGGADAAVS 377          
BLAST of jgi.p|Trimin1|353552 vs. uniprot
Match: A0A7S4G3V3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G3V3_9EUGL)

HSP 1 Score: 124 bits (310), Expect = 1.000e-28
Identity = 90/263 (34.22%), Postives = 127/263 (48.29%), Query Frame = 1
Query:   10 GARTAREIRDAIARNPGLTHISVVGNSLGGLYSRYAVRELHTPDEPGGAIAGLQPVTFMVSALSADAAARAPLSRTIATPHLGVRRYTWGITQYPKFMFPLAKILFGQSGKDLFLTDAEERAAAAAAGVGEGVVGGGEPEVPLLMKMASDEEFLAPLRTFKRRRAYANMRGDFMVTLRTAAIEPHPIKAECQSQRAHEWLWGRASGVIVEQXXXXXXXXXXXXXXXXXXDDSKPVAIGADSAEQVEEQEEAMARALNALGWTK 798
            G R A+EI   + R+P L HIS+VG SLGGLY RYA R L+ P      IAGLQP T +                T+A+PHLGVR++TW     P+ + PL  +L  Q+G DLFL D   R A                  PLL++MA+  EFL PL  F++R A+AN+ GD +V   TAA++   ++    +    +W + R +    +                    D++    G  +A +    E  MA +LNALGW +
Sbjct:   63 GERLAKEIEACVGRHPSLVHISLVGYSLGGLYVRYAARLLYNPKT--NTIAGLQPRTLL----------------TLASPHLGVRKFTW--LPIPRPIHPLIPLLLRQTGSDLFLRDGRRRTA------------------PLLLRMATLPEFLEPLAAFQQRVAFANLAGDLLVPYGTAALDARALQRPGVADPLTDWGFQRGTR---DTGPGAAPGPRARPWNGPHVFDTRRDGDGGTTALRRGPVEARMADSLNALGWRR 284          
BLAST of jgi.p|Trimin1|353552 vs. uniprot
Match: A0A6H5LMX6_9PHAE (DUF676 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMX6_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.320e-26
Identity = 123/384 (32.03%), Postives = 168/384 (43.75%), Query Frame = 1
Query:   10 GARTAREIRDAIARNPGLTHISVVGNSLGGLYSRYAVRELHTPDEPGG------AIAGLQPVTFMVSALSADAAARAPLSRTIATPHLGVRRYTWGITQYPKFMFPLAKILFGQSGKDLFLTDAE--------------ERAAAAAAGVGEGVVGGGEPEVPLLMKMASDEEFLAPLRTFKRRRAYANMRGDFMVTLRTAA-IEPHPIKAECQSQRAHEWLWGRASGVIVEQXXXXXXXXXXXXXXXXXXDDSKPVAIGADSAEQVEEQEEAMARALNALGWTKASAPRADDGIPDSACSLSVVSRRWRCREIAAVARATPPPLSYNAHAGADAS--IRVIVDFGAVLVPGHHNSICAHSANPWTRLVNKAGRNIMDHAAAYLL 1092
            G+R A EIR+ +   P L+ IS+VGNSLGGLY+RYA + L+  +  GG       +AGL P  FM                TIATPHLGVRR+T+     P  +  LA +  G++G DLFL+  +                    AA  G         E  LL  MA+ E+FL PL+ F+ RRAYAN RGDFMV   TAA +EP        S    +    +      EQ                    +  +A G +S    +    A   A+  +    A A  A      S     +  R     +  A AR +   +     AG ++    +V VDFG V  P  HN ICA S    T  +  +GR+++DHAAA+L+
Sbjct:  147 GSRLAEEIREVVQSTPSLSRISLVGNSLGGLYARYAAKLLYRDETTGGDSGTGATVAGLSPSVFM----------------TIATPHLGVRRFTY--VPLPSPLHSLAGVFVGKTGHDLFLSRKKVGXXXXXXXXXXXXXXXXXXAAKDGR--------ENSLLYNMATTEDFLRPLKAFRWRRAYANRRGDFMVPYGTAAFVEPDEGDGSDASPSGRDDA--KTGEEEQEQDVSESDAVVSRGVSSPPDGAAASLAAGTESFTFADRWLGAKNAAIVGVSRVPA-AGAAXXXXXRSDTDSGMGDRAGGANKEEAHARKS---MEEEMAAGLNSCGWEKVSVDFGGV-APFSHNKICALSRTAITTALYGSGRSVVDHAAAFLV 497          
BLAST of jgi.p|Trimin1|353552 vs. uniprot
Match: D7G287_ECTSI (Putative serine esterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G287_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 3.920e-26
Identity = 117/379 (30.87%), Postives = 164/379 (43.27%), Query Frame = 1
Query:   10 GARTAREIRDAIARNPGLTHISVVGNSLGGLYSRYAVRELHTPDEPGG------AIAGLQPVTFMVSALSADAAARAPLSRTIATPHLGVRRYTWGITQYPKFMFPLAKILFGQSGKDLFLTDAEERAAAAAAGVGEGVVGGGEP-------EVPLLMKMASDEEFLAPLRTFKRRRAYANMRGDFMVTLRTAA-IEPHPIKAECQSQRAHEWLWGRASGVIVEQXXXXXXXXXXXXXXXXXXDDSKPVAI--GADSAEQVEEQEEAMARALNALGWTKASAPRADDGIPDSACSLSVVSRRWRCREIAAVARATPPPLSYNAHAGADAS--IRVIVDFGAVLVPGHHNSICAHSANPWTRLVNKAGRNIMDHAAAYLL 1092
            G+R A EI + +   P L+ IS+VGNSLGGLY RYA + L+  +  GG       +AGL P  FM                TIATPHLGVRR+T+     P  +  LA +  G++G DLFL+  +                           E  LL  MA+ ++FL PL+ F+ RRAYAN RGDFMV   TAA +EP        S    +   G  +G   E                    D    A+  G +S    +    A   A+  +    A+          +     V  R    ++  A+ R +   +     AG ++    +V VDFG V  P  HN ICA S    T  +  +GR+++DHAAA+L+
Sbjct:  115 GSRLAEEILEVVQSTPSLSRISLVGNSLGGLYVRYAAKLLYRDETTGGDGGTGATVAGLSPSVFM----------------TIATPHLGVRRFTY--VPLPSPLHSLAGVFVGKTGHDLFLSRKKGGXXXXXXXXXXXXXXXXXXXXAKDGRENSLLYNMATTKDFLRPLKAFRWRRAYANRRGDFMVPYGTAAFVEPDEGDGSDASPSGRD---GAKTGEEEEXEQDVSESDAVVSRGVSSPPDGAAAALADGTESFTFADRLLGAKNAAIVGVSRVSAAGXXXXXXXXRTDSDSGVGDRAGAAKKEEALTRKS---MEEEMAAGLNSCGWEKVSVDFGGV-APFSHNKICALSRTAITTALYGSGRSVVDHAAAFLV 468          
BLAST of jgi.p|Trimin1|353552 vs. uniprot
Match: A0A7S1HTD2_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HTD2_9EUGL)

HSP 1 Score: 111 bits (277), Expect = 6.950e-25
Identity = 75/183 (40.98%), Postives = 94/183 (51.37%), Query Frame = 1
Query:   10 GARTAREIRDAIARNPGLTHISVVGNSLGGLYSRYAVRELHTPDEPGGAIAGLQPVTFMVSALSADAAARAPLSRTIATPHLGVRRYTWGITQYPKFMFPLAKILFGQSGKDLFLTDAEERAAAAAAGVGEGVVGGGEPEVPLLMKMASDEEFLAPLRTFKRRRAYANMRGDFMVTLRTAAIE 558
            G R A EIR+ I + P L  IS+VGNSLGGLY RY  + L+ P      IAGLQP T M                T+A PHLG+R +T+     P  + PLA++L GQ+G DLFL D                         LL  MA+D E+L PL  F+ R  +AN+ GDFMV   TAAI+
Sbjct:   41 GERLAAEIRECIRQYPSLQQISLVGNSLGGLYVRYTAKLLYDPTSR--TIAGLQPRTLM----------------TLACPHLGIRGFTF--VPVPSPLQPLARVLVGQTGDDLFLRDRRR----------------------LLATMATDREYLEPLAAFRNRILFANVEGDFMVPYGTAAID 181          
BLAST of jgi.p|Trimin1|353552 vs. uniprot
Match: A0A4D9CXB7_9STRA (DUF676 domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXB7_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.390e-24
Identity = 106/363 (29.20%), Postives = 149/363 (41.05%), Query Frame = 1
Query:    1 MRSGARTAREIRDAIARNPGLTHISVVGNSLGGLYSRYAVRELHTPDEPGGAIAGLQPVTFMVSALSADAAARAPLSRTIATPHLGVRRYTWGITQYPKFMFPLAKILFGQSGKDLFLTDAEERAAAAAAGVGEGVVGGGEPEVPLLMKMASDEEFLAPLRTFKRRRAYANMRGDFMVTLRTAAIEPHPIKAECQSQRAHEWLWGRASGVIVEQXXXXXXXXXXXXXXXXXXDDSKPVAIGADSAEQVEEQEEAMARALNALGWTKASAPRADDGIPDSACSLSVVSRRWRCREIAAVARATPPPLSYNAHAGADASIRVIVDFGAVLVPGHHNSICAHSANPWTRLVNKAGRNIMDHAAAYL 1089
            ++ G R A EI++ +A +P L  IS +GNSLGG+YSRYA+  L  P      + GL+P+TFM                +IATPHLGVRR+T  +   P  +     +  GQ+G DL L                     GE E PLL++MA   +FL PL  F+ R AY N++ D +V + TA   P P   E       E +      V+ +                   D  K V      A  V      M    +  G   +    A   + D +      +R W    +AA   A    L +          +V V F       H N ICA S +P T  + + G+ +MDHAAA +
Sbjct:   76 VKGGERLAAEIKEVVAAHPSLRAISFIGNSLGGVYSRYALSLLWEPRTR--TVLGLKPITFM----------------SIATPHLGVRRFT--VVPVPDLVHVATPLFIGQTGNDLILRSR------------------GEGETPLLLEMAQSTKFLEPLAAFRHRCAYGNVKEDLLVPIGTALFHPGPESMEGTGHILKETV------VLPDGAREDVRMEVFAMPPAPWEDGLKDVEGVVQGASPV------MKERADGRGRLASVPAVAGGAVSDDS------NRDWMEPRMAAQLNA----LGWE---------KVAVAFRTPFFSAH-NMICALSRDPLTTFLFRKGQGVMDHAAARI 368          
BLAST of jgi.p|Trimin1|353552 vs. uniprot
Match: A0A7S1EK41_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EK41_HEMAN)

HSP 1 Score: 108 bits (269), Expect = 1.660e-23
Identity = 72/186 (38.71%), Postives = 99/186 (53.23%), Query Frame = 1
Query:   10 GARTAREIRDAIARNPGLTHISVVGNSLGGLYSRYAVRELHTPDEPGGAIAGLQPVTFMVSALSADAAARAPLSRTIATPHLGVRRYTWGITQYPKFMFPLAKILFGQSGKDLFLTDAEERAAAAAAGVGEGVVGGGEPEVPLLMKMASDEEFLAPLRTFKRRRAYANMRGDFMVTLRTAAIEPHP 567
            GAR + E+ + + ++PGL  IS VG+SLGGLY+RYA   L +PD   G +AGL+   F+                T  +PH+G+RRYT  I   P  + P+A  + GQ+G DLFL   +                      PLL+ MA+   FLAPLR F+RRRAYAN++GD +V   +AA    P
Sbjct:  106 GARLSIEVAEYVHQHPGLDTISFVGHSLGGLYARYAAAVLSSPD---GRVAGLKAGAFV----------------TTCSPHIGLRRYT--IAFAPSALHPMAWAVLGQTGTDLFLRGRD----------------------PLLLVMATSTHFLAPLRGFERRRAYANLQGDALVPFASAAFMVAP 248          
BLAST of jgi.p|Trimin1|353552 vs. uniprot
Match: A0A7S0TVL3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TVL3_HEMAN)

HSP 1 Score: 104 bits (259), Expect = 3.630e-23
Identity = 69/180 (38.33%), Postives = 95/180 (52.78%), Query Frame = 1
Query:   28 EIRDAIARNPGLTHISVVGNSLGGLYSRYAVRELHTPDEPGGAIAGLQPVTFMVSALSADAAARAPLSRTIATPHLGVRRYTWGITQYPKFMFPLAKILFGQSGKDLFLTDAEERAAAAAAGVGEGVVGGGEPEVPLLMKMASDEEFLAPLRTFKRRRAYANMRGDFMVTLRTAAIEPHP 567
            E+ + + ++PGL  IS VG+SLGGLY+RYA   L +PD   G +AGL+   F+                T  +PH+G+RRYT  I   P  + P+A  + GQ+G DLFL   +                      PLL+ MA+   FLAPLR F+RRRAYAN++GD +V   +AA    P
Sbjct:   16 EVAEYVHQHPGLDTISFVGHSLGGLYARYAAAVLSSPD---GRVAGLKAGAFV----------------TTCSPHIGLRRYT--IAFAPSALHPMAWAVLGQTGTDLFLRGRD----------------------PLLLVMATSTHFLAPLRGFERRRAYANLQGDALVPFASAAFMVAP 152          
BLAST of jgi.p|Trimin1|353552 vs. uniprot
Match: L1J7J1_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J7J1_GUITC)

HSP 1 Score: 110 bits (276), Expect = 1.160e-22
Identity = 96/273 (35.16%), Postives = 124/273 (45.42%), Query Frame = 1
Query:   10 GARTAREIRDAIARNPGLTHISVVGNSLGGLYSRYAVRELHTPDEPGGA------IAGLQPVTFMVSALSADAAARAPLSRTIATPHLGVRRYTWGITQYPKFMFPLAKILFGQSGKDLFLTDAEERAAAAAAGVGEGVVGGGEPEVPLLMKMASDEEFLAPLRTFKRRRAYANMRGDFMVTLRTAAIEPHPIKAECQSQRAHEWLWG-RASGVIVEQXXXXXXXXXXXXXXXXXXDDSKPVAIGAD---SAEQVEEQEEAMARALNALGWTK 798
            G R A+EI + +   P L  IS VGNSLGGLYSRYA+  LH   E GG       + GL+P TF+                T ATPHLGVRR+T+     P  +  LA +  G++G DLF+   E                G EP  PLL+ M++ E FL  LR+F RRRAYAN+ GDF+V   TAA      +A           WG    G   +                    D+    + +D   SA    + E  MA ALN+ GW+K
Sbjct:  211 GWRLAKEIVELVEEVPSLQRISFVGNSLGGLYSRYAIAVLHR--EGGGGRQEEDLVCGLKPDTFV----------------TTATPHLGVRRFTY--LPIPDQLHGLAPVFVGRTGDDLFMLGKE----------------GDEP--PLLLLMSTCEVFLRGLRSFSRRRAYANLEGDFLVPFGTAAFMVEDGRAG----------WGILEKGTSEDFEKKSRRILNQSQVVCEMMVDAHEEQVSSDRIRSANGKSDSEALMATALNSCGWSK 435          
BLAST of jgi.p|Trimin1|353552 vs. uniprot
Match: A0A813G1M4_POLGL (Hypothetical protein (Fragment) n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G1M4_POLGL)

HSP 1 Score: 101 bits (252), Expect = 2.180e-20
Identity = 90/295 (30.51%), Postives = 127/295 (43.05%), Query Frame = 1
Query:   10 GARTAREIRDAIARNPGLTHISVVGNSLGGLYSRYAVRELHTPDEPGGAIAGLQPVTFMVSALSADAAARAPLSRTIATPHLGVRRYTWGITQYPKFMFPLAKILFGQSGKDLFLTDAEERAAAAAAGVGEGVVGGGEPEVPLLMKMASDE-EFLAPLRTFKRRRAYANMRGDFM---VTLRTAAIEPHPIKAECQSQRAHEWLWGRASGVIVEQXXXXXXXXXXXXXXXXXXDDSKPVAIGADSAEQVEEQEEAMARALNALGWTKASAP--RADDGIPDSACSLSVVSRR-WR 873
            G R A EIR   A++P +  +S+VGNSLGGLY+R+A  EL      G  +AGL+P TF+                +I  PHLG+RR+T+     P  +   ++ + G++G+DLFL  +E                      PLL KMA     F   LR F+RR  YAN+ GDFM   V   TAA+EP          R  +++      V+ EQ                      P   G         +E+ MA  L A GW+K +    R     P +   +S ++R  WR
Sbjct:   87 GLRLAEEIRAVAAQHPTVCELSLVGNSLGGLYARFAAGELWAASGDGETLAGLRPATFV----------------SIGCPHLGIRRFTF--LPVPDVLHGASRAVVGRTGEDLFLLGSE----------------------PLLPKMAEPGGRFDRGLRAFRRRGLYANLWGDFMAPWVPFGTAALEPEWGPGAADEARVTDFVHRPGVAVVDEQVLRRQRDGVALAL-------ETPTVSGQAEDRGEASEEKRMAGLLEACGWSKFAVGFRRTSSLFPMAHNKISALTREGWR 334          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353552 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCP2_9STRA5.330e-251100.00Putative serine esterase-domain-containing protein... [more]
A0A7S4G3V3_9EUGL1.000e-2834.22Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A6H5LMX6_9PHAE1.320e-2632.03DUF676 domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G287_ECTSI3.920e-2630.87Putative serine esterase n=1 Tax=Ectocarpus silicu... [more]
A0A7S1HTD2_9EUGL6.950e-2540.98Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A4D9CXB7_9STRA2.390e-2429.20DUF676 domain-containing protein n=4 Tax=Monodopsi... [more]
A0A7S1EK41_HEMAN1.660e-2338.71Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S0TVL3_HEMAN3.630e-2338.33Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
L1J7J1_GUITC1.160e-2235.16Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A813G1M4_POLGL2.180e-2030.51Hypothetical protein (Fragment) n=3 Tax=Polarella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_170contigContig_170:12010..16177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353552|estExt_Genemark1.C_Ctg_1700003
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
KEGG ModuleM00340
KEGG Pathwayko03050,map03050
KEGG koko:K02737
EC3.4.25.1
Descriptionacylglycerol lipase activity
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4372@1|root,KOG4372@2759|Eukaryota
Evalue6.48e-27
Seed ortholog2880.D7G287
Hectar predicted targeting categoryother localisation
TranscriptId353874
TrackFilteredModels1
ProteinId353552
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353552gene_15236Tribonema minus UTEX_B_3156 geneContig_170 12010..16177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353552Trimin1|353552|estExt_Genemark1.C_Ctg_1700003Tribonema minus UTEX_B_3156 polypeptideContig_170 12010..16124 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15236_1exon_15236_1Tribonema minus UTEX_B_3156 exonContig_170 12010..12016 +
exon_15236_2exon_15236_2Tribonema minus UTEX_B_3156 exonContig_170 12126..12352 +
exon_15236_3exon_15236_3Tribonema minus UTEX_B_3156 exonContig_170 12594..12806 +
exon_15236_4exon_15236_4Tribonema minus UTEX_B_3156 exonContig_170 13179..13273 +
exon_15236_5exon_15236_5Tribonema minus UTEX_B_3156 exonContig_170 13997..14027 +
exon_15236_6exon_15236_6Tribonema minus UTEX_B_3156 exonContig_170 14650..14887 +
exon_15236_7exon_15236_7Tribonema minus UTEX_B_3156 exonContig_170 14955..15100 +
exon_15236_8exon_15236_8Tribonema minus UTEX_B_3156 exonContig_170 15388..15467 +
exon_15236_9exon_15236_9Tribonema minus UTEX_B_3156 exonContig_170 16028..16177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15236CDS_15236Tribonema minus UTEX_B_3156 CDSContig_170 12010..12016 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15236UTR3_15236Tribonema minus UTEX_B_3156 three_prime_UTRContig_170 16125..16177 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15236 ID=mRNA_15236|Name=jgi.p|Trimin1|353552|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1187bp|location=Sequence derived from alignment at Contig_170:12010..16177+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAGCGGAGCGCGCACGGCGCGCGAGATCCGCGACGCCATCGCGCG
CAACCCCGGCCTCACGCACATCAGCGTCGTCGGCAACAGCCTCGGCGGCC
TGTACAGCCGCTACGCGGTGAGGGAGCTGCACACGCCCGATGAACCTGGC
GGCGCGATCGCGGGGCTGCAGCCGGTCACGTTCATGGTGAGCGCGCTGAG
CGCTGATGCAGCGGCGCGCGCGCCTCTGAGCCGCACGATAGCCACGCCGC
ACCTGGGCGTCCGGCGCTACACGTGGGGCATCACGCAGTACCCCAAGTTC
ATGTTCCCGCTCGCGAAGATCCTGTTCGGGCAGTCCGGGAAGGATCTGTT
TCTGACGGACGCGGAGGAGCGCGCGGCGGCGGCGGCGGCGGGAGTGGGGG
AGGGGGTGGTTGGCGGCGGCGAGCCGGAAGTTCCGCTGCTGATGAAGATG
GCGTCCGACGAGGAGTTCCTGGCCCCGCTGCGCACCTTCAAGCGGCGGAG
AGCGTACGCCAACATGCGCGGCGACTTCATGGTTACCCTGCGCACTGCAG
CCATCGAGCCACACCCCATCAAGGCCGAGTGCCAGAGCCAGCGCGCGCAC
GAGTGGCTGTGGGGGCGCGCCAGCGGCGTCATCGTCGAGCAGCAGGACAG
CAGCAGCAGCGGTGCACCCGTCGCCGTGCCGGCCGCCGCCGCCGCCGATG
ACTCGAAGCCGGTGGCGATCGGCGCCGACAGCGCCGAGCAGGTGGAAGAG
CAGGAGGAGGCCATGGCGCGAGCACTCAATGCGCTCGGCTGGACCAAGGC
AAGCGCACCTCGCGCTGACGACGGCATCCCAGATAGCGCATGCTCGCTCT
CCGTCGTGAGTCGCCGGTGGCGCTGCCGCGAGATCGCTGCCGTCGCGCGT
GCGACGCCACCACCGCTCAGTTACAACGCTCATGCAGGGGCGGATGCCAG
CATTCGAGTCATCGTCGACTTCGGCGCGGTGTTGGTTCCGGGCCACCACA
ACAGCATCTGTGCGCACAGCGCCAATCCTTGGACCAGGCTGGTCAACAAG
GCTGGCCGTAATATAATGGACCATGCAGCAGCATACCTGCTAGACATAGA
GGGACAGGGGGGCGCTGACGCCGCTGTTTCTTAAGGCGGCTGCCCTGTCA
CCATGTGAATGAACTCTTTCTGGGCACTCATGTCCAC
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protein sequence of jgi.p|Trimin1|353552

>Trimin1|353552|estExt_Genemark1.C_Ctg_1700003 ID=Trimin1|353552|estExt_Genemark1.C_Ctg_1700003|Name=jgi.p|Trimin1|353552|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=378bp
MRSGARTAREIRDAIARNPGLTHISVVGNSLGGLYSRYAVRELHTPDEPG
GAIAGLQPVTFMVSALSADAAARAPLSRTIATPHLGVRRYTWGITQYPKF
MFPLAKILFGQSGKDLFLTDAEERAAAAAAGVGEGVVGGGEPEVPLLMKM
ASDEEFLAPLRTFKRRRAYANMRGDFMVTLRTAAIEPHPIKAECQSQRAH
EWLWGRASGVIVEQQDSSSSGAPVAVPAAAAADDSKPVAIGADSAEQVEE
QEEAMARALNALGWTKASAPRADDGIPDSACSLSVVSRRWRCREIAAVAR
ATPPPLSYNAHAGADASIRVIVDFGAVLVPGHHNSICAHSANPWTRLVNK
AGRNIMDHAAAYLLDIEGQGGADAAVS*
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mRNA from alignment at Contig_170:12010..16177+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15236 ID=mRNA_15236|Name=jgi.p|Trimin1|353552|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4168bp|location=Sequence derived from alignment at Contig_170:12010..16177+ (Tribonema minus UTEX_B_3156 )
ATGCGCAGTGCTGCATCAAATCGGTCTCAAGCGCCCATACCCTACACTTC TTGACACCCCCCCCCCCCCCCATGCGACTGACTGACTCGGCGTCATTTTC TGCCGCATTCGCCCAGGCGGAGCGCGCACGGCGCGCGAGATCCGCGACGC CATCGCGCGCAACCCCGGCCTCACGCACATCAGCGTCGTCGGCAACAGCC TCGGCGGCCTGTACAGCCGCTACGCGGTGAGGGAGCTGCACACGCCCGAT GAACCTGGCGGCGCGATCGCGGGGCTGCAGCCGGTCACGTTCATGGTGAG CGCGCTGAGCGCTGATGCAGCGGCGCGCGCGCCTCTGAGCCGCGTCCGCA CTGCTCTGCGCGTCGTCGGAATTGCTGCTGCCTTTGTAGCTCCTTGTGGC CCGGCATGCGAGGACGACTGTCAGCCGTGGTGATGGCCGCGGCACCTGAT GAGCGCACGGACGCTGTTCGCATGCGCCTTTGCCCCCCCCCCCACACACA CACACACACGCACACACGTGCTTTCACTGCAGTGCTGCCCTGACATGGCG CTTTCCGCGTTTTCCGCCGCTGCCGCCGCCGCAGACGATAGCCACGCCGC ACCTGGGCGTCCGGCGCTACACGTGGGGCATCACGCAGTACCCCAAGTTC ATGTTCCCGCTCGCGAAGATCCTGTTCGGGCAGTCCGGGAAGGATCTGTT TCTGACGGACGCGGAGGAGCGCGCGGCGGCGGCGGCGGCGGGAGTGGGGG AGGGGGTGGTTGGCGGCGGCGAGCCGGAAGTTCCGCTGCTGATGAAGGTG ATGCTGGAGCGCCCGCGTGCTGTGTACATCTTTGCGGGGGCAGGGTCAGG CCATGCCGTGGCTCACCACGGCGCACCGCCTGCTTTTTGCAAGGACGACC TGCCGCTCTGCGCGCCTTGACACTGCGTGCTGCACGTGCGGGCCCGCCCT CTTACCGTCGCTCATCCAGCAACTAGTGCGCTCACTGCTGTTGTCCGCGT GCGCCTTGAGCGCGGACTATGTTGACTTGAGGTAGATGGCAGGGTGAAAG AAATGTGCGCGTCGGGCTTGACCTGTGCTGCTTCACGCCTTGCATCCTCA GCGTCTCATCGTCGCTGCTCATTACCCTACCTACATGCCTATCATACATA TCTATCACTACTGTGTCAGATGGCGTCCGACGAGGAGTTCCTGGCCCCGC TGCGCACCTTCAAGCGGCGGAGAGCGTACGCCAACATGCGCGGCGACTTC ATGGTTACCCTGCGGTGAGCGAGCGGTGGCATGTGCTGAGCACCTGATGC GAAGTCCATGTCGCTACTTGGACTCCTAAATTTTGGAGAGATTTACGTCC GTACCTCCCATTGCCGTGGGGGTCACAGGAACTGCATGTAGCTGTGCTCT GCACTTCAAGTTCAACCGGATCATTTGTGGGGTGCATGCAGGCGCCTATT GCAATCTGCTGCCAACTGCAGTAGGGGAACGTCACTGCTTGTGATACTCC ATGAATCTCCATGCCCTGACTGACAGCGCCGCGCATGGTCCGCCTGTCTG CGCTGCCTCACTCTGGCGTACATCTCGCGTGCACATGCCTGGACGCACGG GCACACATGACCGCAGCGTACGTCCTGATGCACGGTTGGAGTACGCGTCT GGCGCCCTGACAAGTGATGGGGCGTGGTTCAGCTCGCCAGCCACTTTGAG TCAAAGGAGTGCGGTGCGCTGCGCTTTGCAACACGGCGGACCAGGCTGCT TGCATGTGATGCTCTCTCACAACCCTCGTTCTCCTGCGGTTGCAGTCTCT GAGTGTTTCGCTGCATTGATCTCACCGCTGCTGCTGCTGCTGCTGCTGCT GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC TGCTGCTTCTGCTGCTGCTGGCTGCTGCTGCTATCTCCTTCCTATGTGTG TGTGGTGCTATCTCCTTCCTATGTGTGTGTGGTGCAGCACTGCAGCCATC GAGCCACACCCCATCAAGGCAAGTCGTATCCAACGTCATGCATCTGCTGC AGCACGGCAACACGCCTGATCACCGAGCAGCACCGAATGATCCTATGCGC CCATCGCGCATTGGGCCATTGCGCGTATAATGTTGCGCTGGCAAAGGCAG TGCTCTGCGACGCATGCAAGCAGCCACAAAGCAGCAGAGTACTCATCATC AGTAGTAATGGCTGCATACTGTGAAAGGTAGCGATTGGTGCCGCCCTATA CTCCGCAAGGACCGATGCGCTCCTCTCCTGCGCGATGCTCGGGGCCTGGG CGCATGTGCCACCACGTAGTACACAGGCAATTGCTGTGTGGGCGCGCAGG TGCGCAACGGCGGCGCAGCCAGCGATCCCTTTCTTCTCACCGTCTTCGGT CTGTTGTCGCATCACAGCAGCCAGTGTCAGGTCACCGCTTGCGCGCTGTC GCTCTCACCGATTTGCGCACGCTGCCGCCGCCGGCCCCAGCGCCAGAGCC AAGTGACCTGCGGCGCATTCAAACAGCGCTGGACAGACTTGATCTGTGTT GCATTCGTGTCCTGGCGTCACGACATCCCGTCTCCAGTCAGCACAAGCAA ATCTAAAGCGCCTCTCGGTGCTCGCCATTTGCCACGCCAGGCCGAGTGCC AGAGCCAGCGCGCGCACGAGTGGCTGTGGGGGCGCGCCAGCGGCGTCATC GTCGAGCAGCAGGACAGCAGCAGCAGCGGTGCACCCGTCGCCGTGCCGGC CGCCGCCGCCGCCGATGACTCGAAGCCGGTGGCGATCGGCGCCGACAGCG CCGAGCAGGTGGAAGAGCAGGAGGAGGCCATGGCGCGAGCACTCAATGCG CTCGGCTGGACCAAGGCAAGCGCACCTCGTGTGTGCAGGTGCACGTGCAT CTGTGTGTGCGTGTGTTGTTCGTGCATGCGCGTGTGTAGTGCAAGGCGCT GACGACGGCATCCCAGATAGCGCATGCTCGCTCTCCGTCGTGAGTCGCCG GTGGCGCTGCCGCGAGATCGCTGCCGTCGCGCGTGCGACGCCACCACCGC TCAGTTACAACGCTCATGCAGGGGCGGATGCCAGCATTCGAGTCAGAAGC GCTCGGCGGTATCTGTGCGTTGAAATGGGCGGCGCAGAGCCGCAATGTGG CATGCACGCGGCACCGCCATTCACGCCTGCACGCCACGTATGCTGCAGCA CGCGCTCAGATGTGAATGCGCGCGACGCAGCGGCATCCGGCGTTGCTGGT GCGGCTGCCCACTCAGCGAGGTCGCTGACATTCTGCATAGCTGCTGCCTG TCGGCGCCACCGACACAGTGTCGGGGCAGCACGACCTGCCCTAACGCCCG CTGCGCTGCAACACGACGCCTGCTGCAGGTCATCGTCGACTTCGGCGCGG TGTTGGTTCCGGGCCACCACAACAGCATCTGTGCGCACAGCGCCAATCCT TGGACCAGGTGCGTGTGGCATACGTCCATTATGTCCATGTGCCACGCAGC ACCGTTGCATGCCTGTTTCTCATGTGCCTGCGTGTGTGCATGAATGCTGC ATTTTCATCGGAGATGACCGTGCTGAACGCGCGTTGGAGCGCTGCCGTGC CGCTGAACCGCTCCGCCACGTGGCGTTGCGCGTGTGGACACACGCTCGCG CGCTGGGCACTTGTCGGTGACCTCTGCGGCCACGCCGCTCATGGATGTTG CGCTTGGCGCTCCACATTTCCGCAGTGCACCACATCATTGTGTTCACAAT CCACATTCCCGCAGTGCACCATGTCGTTGTGATTGGGCAGTCCCACGCAA TCATGTCATCAGGCTCTATGAATGTACCCAGCCTTCAGTTGCTGCTTGCC ACTCCATGTGTTGAGGGACTCCGCCTACGTCGATTGTCATTGTGGCGCGA CAGGCCATGGAGTGCAGATTGAACTTGATGCCGGTGCAACAGGCTGCGGA GTGCAGATTGAGCTTGACATCGCCCAGCCTAATTGATGCCTCCGACTGCT GCTGCTGCATGTCTGCAGGCTGGTCAACAAGGCTGGCCGTAATATAATGG ACCATGCAGCAGCATACCTGCTAGACATAGAGGGACAGGGGGGCGCTGAC GCCGCTGTTTCTTAAGGCGGCTGCCCTGTCACCATGTGAATGAACTCTTT CTGGGCACTCATGTCCAC
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Coding sequence (CDS) from alignment at Contig_170:12010..16177+

>mRNA_15236 ID=mRNA_15236|Name=jgi.p|Trimin1|353552|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1134bp|location=Sequence derived from alignment at Contig_170:12010..16177+ (Tribonema minus UTEX_B_3156 )
ATGCGCAGCGGAGCGCGCACGGCGCGCGAGATCCGCGACGCCATCGCGCG
CAACCCCGGCCTCACGCACATCAGCGTCGTCGGCAACAGCCTCGGCGGCC
TGTACAGCCGCTACGCGGTGAGGGAGCTGCACACGCCCGATGAACCTGGC
GGCGCGATCGCGGGGCTGCAGCCGGTCACGTTCATGGTGAGCGCGCTGAG
CGCTGATGCAGCGGCGCGCGCGCCTCTGAGCCGCACGATAGCCACGCCGC
ACCTGGGCGTCCGGCGCTACACGTGGGGCATCACGCAGTACCCCAAGTTC
ATGTTCCCGCTCGCGAAGATCCTGTTCGGGCAGTCCGGGAAGGATCTGTT
TCTGACGGACGCGGAGGAGCGCGCGGCGGCGGCGGCGGCGGGAGTGGGGG
AGGGGGTGGTTGGCGGCGGCGAGCCGGAAGTTCCGCTGCTGATGAAGATG
GCGTCCGACGAGGAGTTCCTGGCCCCGCTGCGCACCTTCAAGCGGCGGAG
AGCGTACGCCAACATGCGCGGCGACTTCATGGTTACCCTGCGCACTGCAG
CCATCGAGCCACACCCCATCAAGGCCGAGTGCCAGAGCCAGCGCGCGCAC
GAGTGGCTGTGGGGGCGCGCCAGCGGCGTCATCGTCGAGCAGCAGGACAG
CAGCAGCAGCGGTGCACCCGTCGCCGTGCCGGCCGCCGCCGCCGCCGATG
ACTCGAAGCCGGTGGCGATCGGCGCCGACAGCGCCGAGCAGGTGGAAGAG
CAGGAGGAGGCCATGGCGCGAGCACTCAATGCGCTCGGCTGGACCAAGGC
AAGCGCACCTCGCGCTGACGACGGCATCCCAGATAGCGCATGCTCGCTCT
CCGTCGTGAGTCGCCGGTGGCGCTGCCGCGAGATCGCTGCCGTCGCGCGT
GCGACGCCACCACCGCTCAGTTACAACGCTCATGCAGGGGCGGATGCCAG
CATTCGAGTCATCGTCGACTTCGGCGCGGTGTTGGTTCCGGGCCACCACA
ACAGCATCTGTGCGCACAGCGCCAATCCTTGGACCAGGCTGGTCAACAAG
GCTGGCCGTAATATAATGGACCATGCAGCAGCATACCTGCTAGACATAGA
GGGACAGGGGGGCGCTGACGCCGCTGTTTCTTAA
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