mRNA_15254 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|178439 vs. uniprot
Match: A0A835ZF78_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF78_9STRA) HSP 1 Score: 337 bits (865), Expect = 3.500e-117 Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1 Query: 1 GELADPTGRKTLSPVLALVPIVRLRMGLDLVESWLKLNTTEGWQRALEVLSSSAYSAKEIKRQFNRYSDNIYIEVGSARANAYLDGGAMPTSKETTQYLLRNEVLAHVDELTAELAYLLRDGGGVGGGDTADLYTYLSAAKKSFDDYLQLAPPLDLDGAAEVARAKQPSFK 513 GELADPTGRKTLSPVLALVPIVRLRMGLDLVESWLKLNTTEGWQRALEVLSSSAYSAKEIKRQFNRYSDNIYIEVGSARANAYLDGGAMPTSKETTQYLLRNEVLAHVDELTAELAYLLRDGGGVGGGDTADLYTYLSAAKKSFDDYLQLAPPLDLDGAAEVARAKQPSFK Sbjct: 1 GELADPTGRKTLSPVLALVPIVRLRMGLDLVESWLKLNTTEGWQRALEVLSSSAYSAKEIKRQFNRYSDNIYIEVGSARANAYLDGGAMPTSKETTQYLLRNEVLAHVDELTAELAYLLRDGGGVGGGDTADLYTYLSAAKKSFDDYLQLAPPLDLDGAAEVARAKQPSFK 171
BLAST of jgi.p|Trimin1|178439 vs. uniprot
Match: A0A6H5J809_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J809_9PHAE) HSP 1 Score: 142 bits (358), Expect = 1.780e-38 Identity = 82/164 (50.00%), Postives = 106/164 (64.63%), Query Frame = 1 Query: 7 LADPTGRKTLSPVLALVPIVRLRMGLDLVESWLKLNTTEGWQRALEVLSSSAYSAKEIKRQFNRYSDNIYIEVGSARANAYLDGGAMPTSKETTQYLLRNEVLAHVDELTAELAYLLRDG--GGVGGGDTADLYTYLSAAKKSFDDYLQLAPPLDLDGAAEVAR 492 LA P G KTL PVLALVPI+ LR+ LD VES LK G AL +L + + K+IKR FN YSDNIY S R N YL GGA P+S++T QYLLRN+V+ +V+ LTAE++YL+R+ GG D DL YL K+SFD YL + ++D A ++A+ Sbjct: 127 LASPEGGKTLQPVLALVPIITLRLQLDEVESNLKDPRLFG--AALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEISYLIREREVGGEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAK 288
BLAST of jgi.p|Trimin1|178439 vs. uniprot
Match: D8LLI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI5_ECTSI) HSP 1 Score: 138 bits (347), Expect = 1.360e-37 Identity = 81/168 (48.21%), Postives = 106/168 (63.10%), Query Frame = 1 Query: 7 LADPTGRKTLSPVLALVPIVRLRMGLDLVESWLKLNTTEGWQRALEVLSSSAYSAKEIKRQFNRYSDNIYIEVGSARANAYLDGGAMPTSKETTQYLLRNEVLAHVDELTAELAYLLRD--GGGVGGG----DTADLYTYLSAAKKSFDDYLQLAPPLDLDGAAEVAR 492 LA P G KT+ PVLALVPI+ LR+ LD VE+ LK G AL +L + + K+IKR FN YSDNIY S R N YL GGA P+S++T QYLLRN+V+ +V+ LTAE+AYL+R+ GG G D DL YL K+ FD YL + ++D A ++A+ Sbjct: 60 LASPEGGKTIQPVLALVPIITLRLQLDEVENNLKDPRRFG--AALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESGGEDGSEADTDEKDLRMYLGKCKQGFDKYLGMVLQNEIDEATDMAK 225
BLAST of jgi.p|Trimin1|178439 vs. uniprot
Match: A0A7S0Q4I5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q4I5_9EUKA) HSP 1 Score: 107 bits (267), Expect = 1.750e-25 Identity = 67/168 (39.88%), Postives = 97/168 (57.74%), Query Frame = 1 Query: 1 GELADPTGRKTLSPVLALVPIVRLRMGLDLVESWLKLNTTEGWQRALEVLSSSAYSAKEIKRQFNRYSDNIYIEVGSARANAYLDGGAMPTSKETTQYLLRNEVLAHVDELTAELAYLLRDGGGVGGGDTADLYTYLSAAKKSFDDYLQLAPPLDLDGAAEVARAKQP 504 GELA P G + P L L+PIV+++ L +S L+ W +EVL+S ++ E KR FN Y+DNIY + GS AN YL GGA P++K+T QYLLRNE L ++E+ EL + + G + + YL A +F +YL +APP +L ++AR+ P Sbjct: 94 GELA-PGGPPSTVPGLLLIPIVQMQRVLQ--KSKPLLDDEGKWPALIEVLTSGPFTTIEFKRIFNAYADNIYYKAGSEEANVYLLGGATPSTKQTNQYLLRNEALKQIEEIVDELKF--QQGQPAPKREASVALEYLDNALAAFAEYLSMAPPEEL----KIARSAVP 252
BLAST of jgi.p|Trimin1|178439 vs. uniprot
Match: A0A7S3NME7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NME7_9STRA) HSP 1 Score: 100 bits (248), Expect = 1.550e-22 Identity = 60/172 (34.88%), Postives = 92/172 (53.49%), Query Frame = 1 Query: 10 ADPTGRKTLSPVLALVPIVRLRMGLDLVESWLKLN------TTEGWQRALEVLSSSAYSAKEIKRQFNRYSDNIYIEVGSA-RANAYLDGGAMPTSKETTQYLLRNEVLAHVDELTAELAYLLRDGG-GVGGGDTADLYTYLSAAKKSFDDYLQLAPPLDLDGAAEVARAKQ 501 AD + +P+ + P RL L ++++++ L + E WQ +++LS + KR FN ++DNIY E RANAYL GGA+P++K+T QYL RN+ L ++++L +EL++LL + G G D D Y A +F YL L P D+ A KQ Sbjct: 92 ADSKYDELAAPIQSSSPRSRLAAVLAIIDTFVSLRPAISKGSPEDWQAIVDILSQVPFDKTSFKRIFNAFADNIYYEKSDPDRANAYLLGGAVPSNKQTIQYLYRNDALDNIEQLRSELSFLLNEQGEGGDANDITDALNYHDKATTAFTSYLALIPEADIRDARNYLLNKQ 263
BLAST of jgi.p|Trimin1|178439 vs. uniprot
Match: A0A7S3Q034_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q034_9STRA) HSP 1 Score: 100 bits (249), Expect = 2.410e-22 Identity = 59/164 (35.98%), Postives = 94/164 (57.32%), Query Frame = 1 Query: 1 GELA--DPTGRKTLSPVLALVPIVRLRMGLDLVESWLKLNTTEGWQRALEVLSSSAYSAKEIKRQFNRYSDNIYIEVGSARANAYLDGGAMPTSKETTQYLLRNEVLAHVDELTAELAYLLRDGGGVGGGDTADLYTYLSAAKKSFDDYLQLAPPLDLDGAAEV 486 GELA P GR + +L VPI+ ++ D +++ + + +G +A +LS Y + K+ FN ++DNIY RANAYL GGA+P ++++ YL+RN+VL +V+ L AE+ YL+++ +T DLY Y+ K YL L PP ++ A E+ Sbjct: 150 GELAPGSPIGRDQYAKLL--VPIMIIQKEFDELDTLVHMPNGDGLAQADIILSKKQYEKLQFKKTFNAFADNIYYSDPD-RANAYLGGGAVPKNEQSIAYLIRNDVLTNVENLQAEVTYLIKEIKAGNEMETEDLYLYVQTCKDGMVKYLDLVPPGEVKIAKEI 310
BLAST of jgi.p|Trimin1|178439 vs. uniprot
Match: A0A7S2D3D0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3D0_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 3.580e-22 Identity = 58/155 (37.42%), Postives = 84/155 (54.19%), Query Frame = 1 Query: 52 LVPIVRLRMGLDLVESWLKLNTTEGWQRALEVLSSSAYSAKE-IKRQFNRYSDNIYIEVGSARANAYLDGGAMPTSKETTQYLLRNEVLAHVDELTAELAYLLR---DGGG---VGGGDTADLYTYLSAAKKSFDDYLQLAPPLDLDGAAEVARA 495 LVPIV++ L + + + W+ L+ LS Y+ K+ K FNRY+DNIY+ G RANAYL GG P+S +T QY+LRN++L ++D +T EL YLLR +G + + DL Y YL + P D+ A ++A A Sbjct: 1 LVPIVQIEAQLQQAQQ--DVESASCWKAVLDTLSKEPYAPKQAFKSVFNRYADNIYLAKGDDRANAYLGGGGTPSSLQTVQYMLRNDLLTNLDNVTQELQYLLRCIKEGQSTVDLEANELGDLRQYFKDLTAGLKQYLDIPPKEDVREARKLAVA 153
BLAST of jgi.p|Trimin1|178439 vs. uniprot
Match: R1E6W3_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E6W3_EMIHU) HSP 1 Score: 94.7 bits (234), Expect = 1.280e-21 Identity = 54/116 (46.55%), Postives = 69/116 (59.48%), Query Frame = 1 Query: 109 LNTTEGWQRALEVLSSSAYSAKEIKRQFNRYSDNIYIEVGSARANAYLDGGAMPTSKETTQYLLRNEVLAHVDELTAELAYLLRDGGGVGGGDTADLYTYLSAAKKSFDDYLQLAP 456 L+T W R L V++ + +KR FN YSDNIY GS ANAYL GG+ P+SK+TTQYLLRNEVLA + EL EL Y + G + L K+FD+Y++LAP Sbjct: 12 LSTPSEWPRILGVVTDEPFETVALKRAFNAYSDNIYYASGSPEANAYLLGGSTPSSKQTTQYLLRNEVLAQLAELRDELKY--QQGLPRERQEAEVAAEALQKCLKAFDEYIRLAP 125
BLAST of jgi.p|Trimin1|178439 vs. uniprot
Match: B8CC65_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC65_THAPS) HSP 1 Score: 92.8 bits (229), Expect = 8.090e-20 Identity = 60/172 (34.88%), Postives = 91/172 (52.91%), Query Frame = 1 Query: 1 GELADPTGRKTLSP--VLALVPIVRLRMGLDLVESWL---KLNTTEGWQRALE----VLSSSAYSAKEIKRQFNRYSDNIYIEVGSARANAYLDGGAMPTSKETTQYLLRNEVLAHVDELTAELAYLLRD----GGGVGGGDTADLYTYLSAAKKSFDDYLQLAPPLDLDGA 477 GELA + + T V L PI+ + + ++ L KLN + + A + ++ + K+ FN ++DNIY RAN YL GGA+P ++ YLLRN+VL +V++L AEL YL+++ G G GG + DLY+ + AK YL L PP +L+ A Sbjct: 85 GELASGSFKPTAFDQYVQLLQPILTVEQSIATIDGLLDKTKLNNKDDYVTAFKKADAIIEQPIFDKINFKKAFNAFADNIYYSDPD-RANLYLGGGAIPKPTQSLAYLLRNDVLTNVEDLRAELTYLMKELNRGGAGEGGVELDDLYSIVKMAKDGMVKYLDLVPPKELEAA 255
BLAST of jgi.p|Trimin1|178439 vs. uniprot
Match: A0A7S4E6K7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E6K7_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 8.770e-20 Identity = 63/162 (38.89%), Postives = 86/162 (53.09%), Query Frame = 1 Query: 4 ELADPTGRKTLSPVLALVPIVRLRMGLDLVESWLKLNTTEGWQRALEVLSSSAYSAKEIKRQFNRYSDNIYIEVG-SARANAYLDGGAMPTSKETTQYLLRNEVLAHVDELTAELAYLLRDGGGVGGGDTADLYTYLSAAKKSFDDYLQLAPPLDLDGAAEV 486 ELADP R SP L ++RL + + +L T +G A L+S ++ K IK+ FN YSDN+Y E G S RAN YL GG P+SK+T QY+ RN+ L V L EL YL ++ + D+ A K+FD+Y LAP D+ A + Sbjct: 84 ELADPNLRD--SPGQRLSKVLRLEDAIRAMGP--QLATADGRSLAAAALASPSFETKAIKKAFNAYSDNVYYEKGDSDRANLYLLGGTPPSSKQTIQYMNRNDALDQVQLLRDELDYLKKNPAET----SEDVVAAQRQAVKAFDNYFALAPADDIRAARAI 237 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178439 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15254 ID=mRNA_15254|Name=jgi.p|Trimin1|178439|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=516bp|location=Sequence derived from alignment at Contig_170:171802..173417+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGCGAGCTAGCAGATCCAACGGGCAGGAAAACGCTCAGTCCGGTGCTAGCback to top protein sequence of jgi.p|Trimin1|178439 >Trimin1|178439|e_gw1.170.45.1 ID=Trimin1|178439|e_gw1.170.45.1|Name=jgi.p|Trimin1|178439|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=172bp GELADPTGRKTLSPVLALVPIVRLRMGLDLVESWLKLNTTEGWQRALEVLback to top mRNA from alignment at Contig_170:171802..173417+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15254 ID=mRNA_15254|Name=jgi.p|Trimin1|178439|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1616bp|location=Sequence derived from alignment at Contig_170:171802..173417+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_170:171802..173417+ >mRNA_15254 ID=mRNA_15254|Name=jgi.p|Trimin1|178439|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=516bp|location=Sequence derived from alignment at Contig_170:171802..173417+ (Tribonema minus UTEX_B_3156 )back to top |