mRNA_3427 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347952
Unique NamemRNA_3427
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347952 vs. uniprot
Match: A0A835Z694_9STRA (DUF1995 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z694_9STRA)

HSP 1 Score: 415 bits (1067), Expect = 2.000e-144
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 1 
Query:    1 MQPDEIQRLALPAEFAVPGVSEWPGGRAQQYEVAEPLVRALLRKLDRAANGGVVSRLKTQVTSREDYTALVLSEAPERKDDCAAILNLTAEAALEAQTAAFLKEMGPRLVVLVNPGWNAPSDFGFFARRRAETLLAPFLETYTLVKLTCRSQKVALLRSWPGPWMLYAMAGEDRGAATKWDQVAVLDREDRPSYRECEKLLEAKASAAA 627
            MQPDEIQRLALPAEFAVPGVSEWPGGRAQQYEVAEPLVRALLRKLDRAANGGVVSRLKTQVTSREDYTALVLSEAPERKDDCAAILNLTAEAALEAQTAAFLKEMGPRLVVLVNPGWNAPSDFGFFARRRAETLLAPFLETYTLVKLTCRSQKVALLRSWPGPWMLYAMAGEDRGAATKWDQVAVLDREDRPSYRECEKLLEAKASAAA
Sbjct:    1 MQPDEIQRLALPAEFAVPGVSEWPGGRAQQYEVAEPLVRALLRKLDRAANGGVVSRLKTQVTSREDYTALVLSEAPERKDDCAAILNLTAEAALEAQTAAFLKEMGPRLVVLVNPGWNAPSDFGFFARRRAETLLAPFLETYTLVKLTCRSQKVALLRSWPGPWMLYAMAGEDRGAATKWDQVAVLDREDRPSYRECEKLLEAKASAAA 209
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BLAST of jgi.p|Trimin1|347952 vs. uniprot
Match: A0A835ZAP7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAP7_9STRA)

HSP 1 Score: 206 bits (524), Expect = 4.020e-67
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 2 
Query:   11 MWQWRSRSPSARTAPTLTRSTWSKAPLRRTLACSPCRTSQRPSTRCPRTTASRSCGAGVIPAVTAVTPATLPRPRGGPFTQSDPQRRSARTCTGCCTRACPRTRRT 328
            MWQWRSRSPSARTAPTLTRSTWSKAPLRRTLACSPCRTSQRPSTRCPRTTASRSCGAGVIPAVTAVTPATLPRPRGGPFTQSDPQRRSARTCTGCCTRACPRTRRT
Sbjct:    1 MWQWRSRSPSARTAPTLTRSTWSKAPLRRTLACSPCRTSQRPSTRCPRTTASRSCGAGVIPAVTAVTPATLPRPRGGPFTQSDPQRRSARTCTGCCTRACPRTRRT 106
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BLAST of jgi.p|Trimin1|347952 vs. uniprot
Match: A0A835YYW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.070e-15
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:    4 VFNVAMALKEPFGEDSTDVDPLNLVEGTIKAHVGMLAVPNLAEAEH--TVPAYDSFSELRRGGDSGGYSGYTGDAPAPARGPLHAVRSSKKVSKDLHRVLYSRLPQD 318
            +F+VAMALKEPFG DS+D+DPL  V+  +  H G L+ P++   +   ++ AYD F   +  G S            PARGPLH      +VS +LH +L  RLP D
Sbjct:  122 LFDVAMALKEPFGTDSSDIDPLVAVDRAVALHQGFLSAPSMPADKQPSSMAAYDMFHASKSPGSS---------TWQPARGPLHTATWVPQVSCELHEMLSCRLPHD 219
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BLAST of jgi.p|Trimin1|347952 vs. uniprot
Match: A0A836C9Z5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Z5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.480e-11
Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:    4 VFNVAMALKEPFGEDS-TDVDPLNLVEGTIKAHVGMLAVPNLAEAEHTV-PAYDSFSELRRGGDSGGYSGYTGDAPAPARGPLHAVRSSKKVSKDLHRVLYSRLPQDSK 324
            VF+VAMAL+EPFG DS  D+DPL  VEG +K H  +L +P + E E    P++D F   +    +G +      APA ARGP +        + ++ ++L +RLP+D++
Sbjct:  296 VFDVAMALREPFGIDSGLDIDPLIFVEGNMKTHKAILDMPTMLELEQPQKPSFDMFMRSKPAELAGDF------APA-ARGPSYVSTYKAPDNSEMRKMLSARLPKDAE 397
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BLAST of jgi.p|Trimin1|347952 vs. uniprot
Match: A0A835YZV0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZV0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.410e-10
Identity = 41/107 (38.32%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:    4 VFNVAMALKEPFGEDS-TDVDPLNLVEGTIKAHVGMLAVPNLAEAEHTV-PAYDSFSELRRGGDSGGYSGYTGDAPAPARGPLHAVRSSKKVSKDLHRVLYSRLPQD 318
            VF+VA+AL+EPFG D+  D+DPL  VE TI  H  +L +P +  +E T  P YD +   +         G+    P PARG  +    S  V++++  +L SRLP+D
Sbjct:  337 VFDVAIALREPFGLDAGLDIDPLVFVESTIVGHKALLKLPTMLGSEQTCRPTYDLWQRSKTA------EGHADFIP-PARGAAYTSSYSFPVNQEMREMLSSRLPKD 436
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347952 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z694_9STRA2.000e-144100.00DUF1995 domain-containing protein n=1 Tax=Tribonem... [more]
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BLAST of jgi.p|Trimin1|347952 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZAP7_9STRA4.020e-67100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYW7_9STRA1.070e-1541.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C9Z5_9STRA1.480e-1138.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZV0_9STRA1.410e-1038.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_17contigContig_17:858493..862275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347952|estExt_Genemark1.C_Ctg_170114
DescriptionDomain of unknown function (DUF1995)
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2CY3V@1|root,2S1TJ@2759|Eukaryota
Evalue5.51e-22
Seed ortholog2880.D8LK72
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF1995
Ec32 orthologEc-08_002980.1
TranscriptId348274
TrackFilteredModels1
ProteinId347952
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347952gene_3427Tribonema minus UTEX_B_3156 geneContig_17 858493..862275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347952Trimin1|347952|estExt_Genemark1.C_Ctg_170114Tribonema minus UTEX_B_3156 polypeptideContig_17 858899..862275 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3427_4exon_3427_4Tribonema minus UTEX_B_3156 exonContig_17 858493..858944 -
exon_3427_3exon_3427_3Tribonema minus UTEX_B_3156 exonContig_17 859666..859888 -
exon_3427_2exon_3427_2Tribonema minus UTEX_B_3156 exonContig_17 860701..861046 -
exon_3427_1exon_3427_1Tribonema minus UTEX_B_3156 exonContig_17 862261..862275 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3427UTR3_3427Tribonema minus UTEX_B_3156 three_prime_UTRContig_17 858493..858898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3427CDS_3427Tribonema minus UTEX_B_3156 CDSContig_17 862261..862275 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3427 ID=mRNA_3427|Name=jgi.p|Trimin1|347952|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1036bp|location=Sequence derived from alignment at Contig_17:858493..862275- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCCGACGAGATTCAGCGCCTCGCGCTCCCCGCCGAGTTTGCCGT
CCCCGGCGTCAGCGAGTGGCCCGGCGGCAGGGCTCAGCAGTACGAGGTCG
CGGAGCCGCTCGTCCGAGCGCTGCTGCGGAAGCTCGACCGCGCCGCCAAC
GGCGGCGTCGTGAGCCGGCTCAAGACGCAGGTCACGTCGCGCGAGGACTA
CACGGCGCTGGTGCTGTCGGAGGCGCCGGAGAGGAAGGACGACTGCGCGG
CGATACTGAACTTGACGGCGGAGGCGGCGCTGGAGGCGCAGACAGCGGCG
TTCCTGAAGGAGATGGGGCCGCGGCTCGTGGTGCTGGTGAACCCGGGGTG
GAACGCGCCATCGGATTTTGGCTTCTTCGCGCGGCGCCGCGCAGAGACGC
TGCTGGCGCCGTTCCTGGAAACGTACACGCTGGTCAAGCTCACATGCCGC
AGCCAGAAGGTGGCGCTGCTCCGCTCGTGGCCGGGACCGTGGATGCTGTA
CGCAATGGCGGGGGAGGACCGGGGGGCGGCCACAAAGTGGGATCAGGTGG
CAGTGCTCGACCGCGAGGACCGGCCATCGTACAGGGAGTGCGAGAAGCTG
CTGGAGGCGAAGGCATCAGCGGCAGCCTGAGCTCTGCTGCCGCTCGAGCT
GCTGCCTGATTGCCGCTGCGGGAATCAGTCCAGCCATCACAGCAACAATC
CACAGTAACGCTGCATAGCAATCGACTTTGTACATGACGATGGGGGCATG
GGTGTTCTTGGTGTGGGGCGTGCCGTTGACAAATAGGTTGTTGGGTATGC
AAAGAGGCCATCAGCACGTAGCTACTGTAGGCCTTCAGCACGTAGTTGTT
TAGACAGCGGCTGCACATGAGTTAGCATTGCCAGAATTGCGTGGCGGAAG
CGACCGCAGTACTTCAAAGCCGGCTGTGAGTGACATCCCTTGCGCACAGT
CCGGTGGTGTACTGCCATTGGGGTTTTGAAGTAGATAGATGCATCCTTTA
ATGCACATGGCGTTCAGCATCATAAATATACCTGCC
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protein sequence of jgi.p|Trimin1|347952

>Trimin1|347952|estExt_Genemark1.C_Ctg_170114 ID=Trimin1|347952|estExt_Genemark1.C_Ctg_170114|Name=jgi.p|Trimin1|347952|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=210bp
MQPDEIQRLALPAEFAVPGVSEWPGGRAQQYEVAEPLVRALLRKLDRAAN
GGVVSRLKTQVTSREDYTALVLSEAPERKDDCAAILNLTAEAALEAQTAA
FLKEMGPRLVVLVNPGWNAPSDFGFFARRRAETLLAPFLETYTLVKLTCR
SQKVALLRSWPGPWMLYAMAGEDRGAATKWDQVAVLDREDRPSYRECEKL
LEAKASAAA*
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mRNA from alignment at Contig_17:858493..862275-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3427 ID=mRNA_3427|Name=jgi.p|Trimin1|347952|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3783bp|location=Sequence derived from alignment at Contig_17:858493..862275- (Tribonema minus UTEX_B_3156 )
ATGCAGCCCGACGAGGTGAGCGGTCGACACAGGAGCTTGTTGAGCAGGTG
ACAGTGTATTCCGGTGTGTAACGTTGCATAATTCACCTGGCGTCTACAAC
TGTCTTGAAGGGCCGGAGTTAGGCCCCGAAATGCCCTTATGCTGTTGCAA
GGTACTATTATGTGACAAAGAATTGAAGGCTGCTGTTTGTTCAGAATCCT
CTCGACGAGCATTGCAGCTCACCAGTTTAATTGGGCCTGATTCTTGTCTA
TATGGCAAGCTTCGGTGCTGTACAAGGTGCCGTCCGTAGACGCCAACTCT
GTTGCACATCAAGCTCCTCTTGCAACATAAGCTGAGATGAGGCTGCCTCA
TCGCCTCCATTCTAGACGTTTCTAGTTACACAGTGAAGCTGTTATTCCTT
GTGTCAAGTGTCAGTGCTGACATGCCTATTTCAGGGTTGGGGAAAGATGG
TACTGCACTGAGTTGACATCCAACGAATGCACAGTAGGATGTCTGCGGCG
CGGAGTGGTAAATACGTGTTGAACAACGCACCTTGAAAACCATTTCATGT
TGAACAAGGCACCTTGAATTCATTTCATGGCTGATGTTGGCGGGCTGAAA
GCGCAATACCGTCAGCGTGTGTCCATGCAACGGTATAAGCGTGCTCTTGG
TGAAACTGGTACTTTGTGAAGTATATGCCACGTCAAACTACCGCAAGCGT
GCAACAAGTGCATGCGTGCTTTTTGAGAAATGGTACACGCTATTTGAATA
TATGGGGTTTTGATTTTCATGTTCTTGCACTCTAGCATTAGATGTACTTG
AAGTATGTCGTTTTGGCTTCCACGAGCGTCCACTTTTGGCGCAGTTGTGC
CATAGTGTCGTTTTCAGTGAAGTGGCAACAAGTCCACACCACGAGAAATT
GAGCTCCTTGTAGAACTCTGAATTGTACAACATGAGAGATGCAAGTGCAT
GCAGATGTCATGGCCCATGACACGAGTGGTGTCGGTGCTTGCGCTGCAGT
GGCCTACAAGCAACTATCAGTCAGCTACTGTTTCACACAGGATTCTCCGC
TGCAGCGCATCATTATTTGCAGGCGCTGCTGCCTCTGCCCCCAGCACCTC
TGCCTTGTACCACTCCTTATCAATCATCCGCTGACTGACCCGTTCGCCCC
TGCTCCAAACCCCCCCTCCCCCCACCCCCCCTCCTGACCCGAAACTGCTC
CAGCCGCGACGGCCGGACACGCGCGCCAGATTCAGCGCCTCGCGCTCCCC
GCCGAGTTTGCCGTCCCCGGCGTCAGCGAGTGGCCCGGCGGCAGGGCTCA
GCAGTACGAGGTCGCGGAGCCGCTCGTCCGAGCGCTGCTGCGGAAGCTCG
ACCGCGCCGCCAACGGCGGCGTCGTGAGCCGGCTCAAGACGCAGGTCACG
TCGCGCGAGGACTACACGGCGCTGGTGCTGTCGGAGGCGCCGGAGAGGAA
GGACGACTGCGCGGCGATACTGAACTTGACGGCGGAGGCGGCGCTGGAGG
CGCAGACAGCGGCGTTCCTGAAGGAGATGGGGCCGCGGCTCGTGGTGCTG
GTGAACCCGGGGTGGAACGCGCCATGTGAGTGCTCGATTGTGAAGTTTCG
AAGCGGAATGATCCCTGCGTCGCATGAGGGCCGCTGCGGAGTGGAAGTAC
AACGCTCACCCTCGATCACACCCAGGCATGTGCTATCGTGTAACTCTTAG
GTGATTGCGCGACGACTGCTACAATTAAACCTACGCATGTGCCAGAGACT
CGTCCTGATGCCACCTGCCTGGCAGCTCTGCACGATGACAGATGAAGTCG
ACAGCGGAGGCGGCGCAGGATGGCCTGGCGAACGGCTATGTGTAGCTGCT
GCTGATGAACTGTCGAACCACGAGAGAGAGCGTCAAGCGAGCGCCACTGT
TGTAGACAACGGATTTGTATGTGTCGTGCACGACTGCGTGACGCCATCGT
GCAACGGCTCCTGCGGGCTCGTGGCGTTTGATGAACGTGGCGGACGCAGC
GCCAGGTGGGCGGGCAGCAGCGTTCGTGCCCCACAGATTGGGTGCCGCTG
CTTGCATCAGCAGGACCATTCTTGTCTCAACGGTACTCTGTGATGCTGCT
GCTATCGAACAGCTGGTGTGCAGGCACAGTGAAGTGTGGCGAGTCCAAGC
ATCATTTGGAAGTTCTCAGGCGAGGCCAGGTTTACTCGTTTAGTCAACTG
CCGTTGCAGACCCTCTGCACCTGCCTCCAAACCATTGCAGCTCACCAGCA
GGTGCTGGCACGTCGCAGCAACTTTGCCAATTCATGCTTCACTCTCTGCG
CCAATTGCACACACCGCTTCCTGACCCCCCACCCCCCCCCCACCCCTCCC
CCACACCCCCCTTCCTCTCGCTTCGCCCGCAATGCAGCGGATTTTGGCTT
CTTCGCGCGGCGCCGCGCAGAGACGCTGCTGGCGCCGTTCCTGGAAACGT
ACACGCTGGTCAAGCTCACATGCCGCAGCCAGAAGGTGGCGCTGCTCCGC
TCGTGGCCGGGACCGTGGATGCTGTACGCAATGGCGGGGGAGGACCGGGG
GGCGGCCACAAAGTGGGATCAGGTGGCAGTGCTCGACCGCGAGGACCGGC
CATCGTACAGGTGCGGCTTTCAAGCATTTCTTTTCTGTGCAGGCGTGCGG
CCGTCGGCGTTAGTGGCATTGTATGCTGACGTTTCATGAAGTGTATGGTC
GAGCACTGGAGTGTATGTGGGCAAAGCCGCGATTCAATGGCAGCACCCCA
TAGCAAGGTTCAGTTGGTGTACATAATGCCTTGGTGGGCGCGCCTGCTTT
TGTGGCACTGCCACGAGCGGAGCACAGGGTACAATGTGAGGCGCGAGGGG
TGCGGTGCAACAAGCACGCGGTCTCAAGTGACAGCGCTTCCCTGCGCGCA
CCGTGCAAAAGCACCCCTTGCGCGACCGCTCGAATGGCATGGCTATCAGC
TCAAGGGAAGTATGTAGCAAGGCTACATTGTAGCAGTACATACGTGCAAG
GGCGAGGTGGCAGTGCTCAAAGTGAGGCACCTGCATGTAGGTATGCAGTG
GCGCACTAGATGCGATTCGCCAAAAGCTTATATGAGTCAGCATTGTTTGC
GTGATGGCTATGACAGGTACCCATCCTTTGCAGCGTGTTGAAGAAGCCAC
TTGTTCTATGGCATACCGCACACGTCTCCCGTCTACATGTCAGACGTCTC
ATGGTGATGGTGCCTTGTTTTCTCCACATTCAGAATCCATGCATGAGCTC
AGGCACACCCCCCACATCAGCGTGTGTTGGTCAGCGAGTGACCGTAAGTT
GTCATGCTGTCGCGCTGCCACGCACCTACAGGGAGTGCGAGAAGCTGCTG
GAGGCGAAGGCATCAGCGGCAGCCTGAGCTCTGCTGCCGCTCGAGCTGCT
GCCTGATTGCCGCTGCGGGAATCAGTCCAGCCATCACAGCAACAATCCAC
AGTAACGCTGCATAGCAATCGACTTTGTACATGACGATGGGGGCATGGGT
GTTCTTGGTGTGGGGCGTGCCGTTGACAAATAGGTTGTTGGGTATGCAAA
GAGGCCATCAGCACGTAGCTACTGTAGGCCTTCAGCACGTAGTTGTTTAG
ACAGCGGCTGCACATGAGTTAGCATTGCCAGAATTGCGTGGCGGAAGCGA
CCGCAGTACTTCAAAGCCGGCTGTGAGTGACATCCCTTGCGCACAGTCCG
GTGGTGTACTGCCATTGGGGTTTTGAAGTAGATAGATGCATCCTTTAATG
CACATGGCGTTCAGCATCATAAATATACCTGCC
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Coding sequence (CDS) from alignment at Contig_17:858493..862275-

>mRNA_3427 ID=mRNA_3427|Name=jgi.p|Trimin1|347952|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=630bp|location=Sequence derived from alignment at Contig_17:858493..862275- (Tribonema minus UTEX_B_3156 )
ATGCAGCCCGACGAGATTCAGCGCCTCGCGCTCCCCGCCGAGTTTGCCGT
CCCCGGCGTCAGCGAGTGGCCCGGCGGCAGGGCTCAGCAGTACGAGGTCG
CGGAGCCGCTCGTCCGAGCGCTGCTGCGGAAGCTCGACCGCGCCGCCAAC
GGCGGCGTCGTGAGCCGGCTCAAGACGCAGGTCACGTCGCGCGAGGACTA
CACGGCGCTGGTGCTGTCGGAGGCGCCGGAGAGGAAGGACGACTGCGCGG
CGATACTGAACTTGACGGCGGAGGCGGCGCTGGAGGCGCAGACAGCGGCG
TTCCTGAAGGAGATGGGGCCGCGGCTCGTGGTGCTGGTGAACCCGGGGTG
GAACGCGCCATCGGATTTTGGCTTCTTCGCGCGGCGCCGCGCAGAGACGC
TGCTGGCGCCGTTCCTGGAAACGTACACGCTGGTCAAGCTCACATGCCGC
AGCCAGAAGGTGGCGCTGCTCCGCTCGTGGCCGGGACCGTGGATGCTGTA
CGCAATGGCGGGGGAGGACCGGGGGGCGGCCACAAAGTGGGATCAGGTGG
CAGTGCTCGACCGCGAGGACCGGCCATCGTACAGGGAGTGCGAGAAGCTG
CTGGAGGCGAAGGCATCAGCGGCAGCCTGA
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