mRNA_3359 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|153093
Unique NamemRNA_3359
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|153093 vs. uniprot
Match: A0A835Z6I7_9STRA (Ankyrin repeat protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6I7_9STRA)

HSP 1 Score: 200 bits (508), Expect = 5.910e-65
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 LQDHGLTALHYAVFNGNTLCVEVLCANASGHDANGHHCSCIDMVSTMGCTALHLAAAEASNAAAIIEILLSSGADAAIRDGQGRTAADVAAEKGRHQYAEVLS 309
            LQDHGLTALHYAVFNGNTLCVEVLCANASGHDANGHHCSCIDMVSTMGCTALHLAAAEASNAAAIIEILLSSGADAAIRDGQGRTAADVAAEKGRHQYAEVLS
Sbjct:    1 LQDHGLTALHYAVFNGNTLCVEVLCANASGHDANGHHCSCIDMVSTMGCTALHLAAAEASNAAAIIEILLSSGADAAIRDGQGRTAADVAAEKGRHQYAEVLS 103
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BLAST of jgi.p|Trimin1|153093 vs. uniprot
Match: D7FUI1_ECTSI (Ankyrin repeat protein E2_17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUI1_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.870e-21
Identity = 50/103 (48.54%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    1 LQDHGLTALHYAVFNGNTLCVEVLCANASGHDANGHHCSCIDMVSTMGCTALHLAAAEASNAAAIIEILLSSGADAAIRDGQGRTAADVAAEKGRHQYAEVLS 309
            + D GL+ALHYA +NG+  CVE+LC N  GHD  G   SCID+ S  G T LHLAA++  N    I+ LL +GAD +IRD  G+TA + A + GR   A  L+
Sbjct:    1 MDDFGLSALHYASWNGHVRCVEILCINDLGHDGAGLQRSCIDLRSIKGWTPLHLAASDGVNGMKCIDALLRAGADRSIRDVDGKTALEAAIDAGRDDCARALN 103
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BLAST of jgi.p|Trimin1|153093 vs. uniprot
Match: A0A7S4VTH5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VTH5_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.370e-8
Identity = 48/130 (36.92%), Postives = 65/130 (50.00%), Query Frame = 1 
Query:    1 LQDHGLTALHYAVFNGNTLCVEVLCANASG-HDANGHHCSCIDMVSTMGCTALHLAAAEASNAAAIIE-------------------------ILLSSGADA-AIRDGQGRTAADVAAEKGRHQYAEVLS 309
            + + GLTALHYAV+NG+  CVE+L AN  G H   G  CS I++ S  G TALH+ A      AA++E                         +LL  GAD  A+RD +G++A D+A E G      V +
Sbjct:   31 VDEKGLTALHYAVWNGHLQCVEILVANHWGKHHETGDVCSSINLQSKTGYTALHIVA---MRMAALLEDESYDANENSDERQTKESENIECCRLLLMVGADCIALRDIEGKSAIDLAREAGNESLVSVFN 157
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BLAST of jgi.p|Trimin1|153093 vs. uniprot
Match: A0A482S1M6_9ARCH (Ankyrin repeat protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1M6_9ARCH)

HSP 1 Score: 53.1 bits (126), Expect = 5.520e-7
Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 LQDHGLTALHYAVFNGNTLCVEVLCANASGHDANGHHCSCIDMVSTMGCTALH 159
            + + GLTALHYAV+NG+  CV++L  N+ G D+ G   +C++M S +G T  H
Sbjct:   31 IDEWGLTALHYAVWNGHVECVKLLVFNSHGVDSKGQKTTCLNMKSCIGLTGTH 83
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153093 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835Z6I7_9STRA5.910e-65100.00Ankyrin repeat protein (Fragment) n=1 Tax=Tribonem... [more]
D7FUI1_ECTSI1.870e-2148.54Ankyrin repeat protein E2_17 n=2 Tax=Ectocarpus Ta... [more]
A0A7S4VTH5_9STRA1.370e-836.92Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A482S1M6_9ARCH5.520e-745.28Ankyrin repeat protein n=1 Tax=archaeon TaxID=1906... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_17contigContig_17:380229..380537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|153093|gw1.17.226.1
BRITEko00000,ko00001,ko04131
KEGG Pathwayko04144,ko04666,map04144,map04666
KEGG koko:K12488
GOsGO:0000139,GO:0000278,GO:0000281,GO:0000910,GO:0001654,GO:0001745,GO:0001786,GO:0002102,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005547,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005829,GO:0005856,GO:0005886,GO:0006996,GO:0007049,GO:0007275,GO:0007399,GO:0007423,GO:0008047,GO:0008150,GO:0008289,GO:0009653,GO:0009887,GO:0009987,GO:0010324,GO:0010638,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015629,GO:0016020,GO:0016043,GO:0017124,GO:0019904,GO:0022008,GO:0022402,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030234,GO:0030425,GO:0030695,GO:0031090,GO:0031253,GO:0031334,GO:0031344,GO:0031345,GO:0031984,GO:0031985,GO:0032266,GO:0032501,GO:0032502,GO:0032506,GO:0032580,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0035091,GO:0036090,GO:0036477,GO:0042995,GO:0043005,GO:0043085,GO:0043087,GO:0043167,GO:0043168,GO:0043197,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043547,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044309,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044782,GO:0045177,GO:0045202,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048592,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051093,GO:0051128,GO:0051129,GO:0051130,GO:0051239,GO:0051241,GO:0051301,GO:0051336,GO:0051345,GO:0051960,GO:0051961,GO:0060271,GO:0060284,GO:0060341,GO:0060589,GO:0060998,GO:0061000,GO:0061024,GO:0061640,GO:0065007,GO:0065009,GO:0070925,GO:0071801,GO:0071803,GO:0071840,GO:0071944,GO:0072341,GO:0090596,GO:0097447,GO:0097458,GO:0098588,GO:0098590,GO:0098772,GO:0098791,GO:0098794,GO:0099024,GO:0120025,GO:0120031,GO:0120035,GO:0120036,GO:0120038,GO:1901981,GO:1902115,GO:1902117,GO:1902410,GO:1902936,GO:1903047,GO:1903358,GO:1903525,GO:1903527,GO:1903729,GO:1903827,GO:1903829,GO:1990386,GO:2000026,GO:2000171
Preferred nameASAP1
DescriptionBAR domain of APPL family
COG categoryT
Max annot lvl33208|Metazoa
EggNOG OGsCOG5347@1|root,KOG0521@2759|Eukaryota,38B5T@33154|Opisthokonta,3B9HF@33208|Metazoa,3CS72@33213|Bilateria,41VNC@6656|Arthropoda,3SJEJ@50557|Insecta,46HVK@7399|Hymenoptera
Evalue0.000307
Seed ortholog7425.NV11056-PA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-21_003800.1
TranscriptId153415
TrackFilteredModels1
ProteinId153093
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153093gene_3359Tribonema minus UTEX_B_3156 geneContig_17 380229..380537 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3359_1exon_3359_1Tribonema minus UTEX_B_3156 exonContig_17 380229..380537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3359CDS_3359Tribonema minus UTEX_B_3156 CDSContig_17 380229..380537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153093Trimin1|153093|gw1.17.226.1Tribonema minus UTEX_B_3156 polypeptideContig_17 380229..380537 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3359 ID=mRNA_3359|Name=jgi.p|Trimin1|153093|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=309bp|location=Sequence derived from alignment at Contig_17:380229..380537- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTGCAGGACCATGGCCTCACCGCCCTGCACTACGCGGTCTTCAATGGCAA
CACGCTGTGCGTGGAAGTGTTGTGCGCCAATGCATCTGGCCACGACGCGA
ACGGCCATCACTGCAGCTGCATTGACATGGTGTCAACAATGGGCTGCACC
GCCTTGCACCTTGCGGCAGCGGAGGCATCCAATGCGGCTGCAATCATAGA
GATACTGCTGTCAAGTGGTGCAGATGCTGCAATAAGAGATGGACAGGGGC
GCACCGCTGCTGATGTCGCAGCAGAAAAGGGACGCCATCAATATGCAGAA
GTGCTCAGC
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protein sequence of jgi.p|Trimin1|153093

>Trimin1|153093|gw1.17.226.1 ID=Trimin1|153093|gw1.17.226.1|Name=jgi.p|Trimin1|153093|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=103bp
LQDHGLTALHYAVFNGNTLCVEVLCANASGHDANGHHCSCIDMVSTMGCT
ALHLAAAEASNAAAIIEILLSSGADAAIRDGQGRTAADVAAEKGRHQYAE
VLS
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mRNA from alignment at Contig_17:380229..380537-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3359 ID=mRNA_3359|Name=jgi.p|Trimin1|153093|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=309bp|location=Sequence derived from alignment at Contig_17:380229..380537- (Tribonema minus UTEX_B_3156 )
TTGCAGGACCATGGCCTCACCGCCCTGCACTACGCGGTCTTCAATGGCAA
CACGCTGTGCGTGGAAGTGTTGTGCGCCAATGCATCTGGCCACGACGCGA
ACGGCCATCACTGCAGCTGCATTGACATGGTGTCAACAATGGGCTGCACC
GCCTTGCACCTTGCGGCAGCGGAGGCATCCAATGCGGCTGCAATCATAGA
GATACTGCTGTCAAGTGGTGCAGATGCTGCAATAAGAGATGGACAGGGGC
GCACCGCTGCTGATGTCGCAGCAGAAAAGGGACGCCATCAATATGCAGAA
GTGCTCAGC
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Coding sequence (CDS) from alignment at Contig_17:380229..380537-

>mRNA_3359 ID=mRNA_3359|Name=jgi.p|Trimin1|153093|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=309bp|location=Sequence derived from alignment at Contig_17:380229..380537- (Tribonema minus UTEX_B_3156 )
TTGCAGGACCATGGCCTCACCGCCCTGCACTACGCGGTCTTCAATGGCAA
CACGCTGTGCGTGGAAGTGTTGTGCGCCAATGCATCTGGCCACGACGCGA
ACGGCCATCACTGCAGCTGCATTGACATGGTGTCAACAATGGGCTGCACC
GCCTTGCACCTTGCGGCAGCGGAGGCATCCAATGCGGCTGCAATCATAGA
GATACTGCTGTCAAGTGGTGCAGATGCTGCAATAAGAGATGGACAGGGGC
GCACCGCTGCTGATGTCGCAGCAGAAAAGGGACGCCATCAATATGCAGAA
GTGCTCAGC
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