mRNA_10031 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173119
Unique NamemRNA_10031
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|173119 vs. uniprot
Match: A0A835ZPQ7_9STRA (GYF domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPQ7_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.600e-45
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 MVQAGVTLEPWYYLDPQGNRQGPFSSHDMREWFEAGYFVEGLPLAQGIDRQFRAMSQLFPDASQAFV 201
            MVQAGVTLEPWYYLDPQGNRQGPFSSHDMREWFEAGYFVEGLPLAQGIDRQFRAMSQLFPDASQAFV
Sbjct:    1 MVQAGVTLEPWYYLDPQGNRQGPFSSHDMREWFEAGYFVEGLPLAQGIDRQFRAMSQLFPDASQAFV 67
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BLAST of jgi.p|Trimin1|173119 vs. uniprot
Match: F0YBM2_AURAN (GYF domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBM2_AURAN)

HSP 1 Score: 72.8 bits (177), Expect = 1.330e-15
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   22 LEPWYYLDPQGNRQGPFSSHDMREWFEAGYFVEGLPLAQGIDRQFRAMSQLFPDASQAFV 201
            ++PW+Y DPQG  QGPF +  MR+WF AGYF + LPL QG    F  + +LF     AFV
Sbjct:    2 VKPWFYKDPQGQHQGPFEAPQMRQWFNAGYFDDDLPLRQGESGDFVPLGRLFSSPQDAFV 61
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BLAST of jgi.p|Trimin1|173119 vs. uniprot
Match: A0A812RMR1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812RMR1_9DINO)

HSP 1 Score: 78.2 bits (191), Expect = 2.610e-15
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   31 WYYLDPQGNRQGPFSSHDMREWFEAGYFVEGLPLAQGIDRQFRAMSQLFPDASQAFV 201
            WYY DP+GN QGPFSS DMR WF+ GYF   LP+  G   +F  +S++FPD+S AF+
Sbjct:  141 WYYQDPKGNHQGPFSSGDMRAWFKGGYFKPHLPIRVGTAGKFTPLSEMFPDSSSAFL 197
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BLAST of jgi.p|Trimin1|173119 vs. uniprot
Match: A0A5D6Y3L8_9STRA (GYF domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3L8_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 5.940e-14
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   10 AGVTLEPWYYLDPQGNRQGPFSSHDMREWFEAGYFVEGLPLAQGIDRQFRAMSQLF 177
            +GV ++ W+YLDPQGN+QGPF S +MREWFEAGYF   LP+  G D QF A++  F
Sbjct:  306 SGV-VDEWFYLDPQGNQQGPFKSVEMREWFEAGYFKPHLPIRFGGDGQFTALASHF 360
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BLAST of jgi.p|Trimin1|173119 vs. uniprot
Match: A0A7J7KNM0_BUGNE (GIGYF2 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KNM0_BUGNE)

HSP 1 Score: 69.7 bits (169), Expect = 2.520e-12
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   25 EPWYYLDPQGNRQGPFSSHDMREWFEAGYFVEGLPLAQGIDRQFRAMSQLF 177
            E W+Y DPQG  QGPF++ +M EWF AGYF   LP+ QG DR F+ + ++F
Sbjct:  572 EHWFYQDPQGKLQGPFTAQEMAEWFSAGYFTMNLPVKQGKDRVFQPLGEIF 622
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BLAST of jgi.p|Trimin1|173119 vs. uniprot
Match: A0A6S8CDN4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8CDN4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.710e-12
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   28 PWYYLDPQGNRQGPFSSHDMREWFEAGYFVEGLPLAQGI-DRQFRAMSQLFPDASQAFV 201
            PWYY DPQGN QGPF    MR+WF+AGYF + LP+ Q   D  F A+  +F  A  AFV
Sbjct:  439 PWYYRDPQGNIQGPFEPMQMRQWFDAGYFDDDLPVRQQTPDGPFLALGIVFSSARTAFV 497
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BLAST of jgi.p|Trimin1|173119 vs. uniprot
Match: A0A815GAT6_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815GAT6_9BILA)

HSP 1 Score: 68.2 bits (165), Expect = 8.800e-12
Identity = 29/55 (52.73%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:   10 AGVTLEPWYYLDPQGNRQGPFSSHDMREWFEAGYFVEGLPLAQGIDRQFRAMSQL 174
            A V ++ WYY DPQGN QGPFSS DM  WF AGYF   LP+ +  D  F  +  L
Sbjct:  561 ADVNVKQWYYKDPQGNTQGPFSSQDMERWFSAGYFTILLPVKRHSDMHFTTIRDL 615
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BLAST of jgi.p|Trimin1|173119 vs. uniprot
Match: A0A8J2SWM6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SWM6_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.190e-11
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   28 PWYYLDPQGNRQGPFSSHDMREWFEAGYFVEGLPLAQGIDRQFRAMSQLFPDA-SQAFV 201
            PW+Y DPQG  QGPF +  MR+WF+AGYF + LPL QG +  F ++  LF +    AFV
Sbjct:  324 PWFYRDPQGAVQGPFEATQMRQWFQAGYFDDDLPLRQGSNGDFHSLKLLFTNPPGDAFV 382
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BLAST of jgi.p|Trimin1|173119 vs. uniprot
Match: A0A4W4DUU6_ELEEL (GRB10 interacting GYF protein 2 n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4DUU6_ELEEL)

HSP 1 Score: 67.8 bits (164), Expect = 1.200e-11
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   31 WYYLDPQGNRQGPFSSHDMREWFEAGYFVEGLPLAQGIDRQFRAMSQLF 177
            WYY DPQG  QGPFSSH+M EWF+AGYF   L + +G D  F  + ++F
Sbjct:   57 WYYKDPQGEIQGPFSSHEMSEWFQAGYFPMTLMVKRGCDEGFHPLGEIF 105
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BLAST of jgi.p|Trimin1|173119 vs. uniprot
Match: UPI0015D01A8E (GRB10-interacting GYF protein 2 isoform X1 n=2 Tax=Electrophorus electricus TaxID=8005 RepID=UPI0015D01A8E)

HSP 1 Score: 67.8 bits (164), Expect = 1.210e-11
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   31 WYYLDPQGNRQGPFSSHDMREWFEAGYFVEGLPLAQGIDRQFRAMSQLF 177
            WYY DPQG  QGPFSSH+M EWF+AGYF   L + +G D  F  + ++F
Sbjct:  546 WYYKDPQGEIQGPFSSHEMSEWFQAGYFPMTLMVKRGCDEGFHPLGEIF 594
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173119 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZPQ7_9STRA3.600e-45100.00GYF domain-containing protein (Fragment) n=1 Tax=T... [more]
F0YBM2_AURAN1.330e-1550.00GYF domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A812RMR1_9DINO2.610e-1556.14Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A5D6Y3L8_9STRA5.940e-1458.93GYF domain-containing protein n=1 Tax=Pythium bras... [more]
A0A7J7KNM0_BUGNE2.520e-1252.94GIGYF2 n=1 Tax=Bugula neritina TaxID=10212 RepID=A... [more]
A0A6S8CDN4_9STRA4.710e-1254.24Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A815GAT6_9BILA8.800e-1252.73Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A8J2SWM6_9STRA1.190e-1150.85Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4W4DUU6_ELEEL1.200e-1155.10GRB10 interacting GYF protein 2 n=1 Tax=Electropho... [more]
UPI0015D01A8E1.210e-1155.10GRB10-interacting GYF protein 2 isoform X1 n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_100contigContig_100:252905..253105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173119|e_gw1.100.130.1
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0097159,GO:1901363
Preferred namemyef2
DescriptionRNA binding
COG categoryH
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota
Evalue3.39e-14
Seed ortholog159749.K0RJJ6
Hectar predicted targeting categoryother localisation
TranscriptId173441
TrackFilteredModels1
ProteinId173119
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173119gene_10031Tribonema minus UTEX_B_3156 geneContig_100 252905..253105 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10031_1exon_10031_1Tribonema minus UTEX_B_3156 exonContig_100 252905..253105 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10031CDS_10031Tribonema minus UTEX_B_3156 CDSContig_100 252905..253105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173119Trimin1|173119|e_gw1.100.130.1Tribonema minus UTEX_B_3156 polypeptideContig_100 252905..253105 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10031 ID=mRNA_10031|Name=jgi.p|Trimin1|173119|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=201bp|location=Sequence derived from alignment at Contig_100:252905..253105- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCAGGCGGGGGTGACGCTGGAGCCGTGGTACTACCTGGACCCGCA
GGGGAACCGGCAGGGACCGTTCTCGAGCCACGACATGCGCGAGTGGTTCG
AGGCGGGGTACTTTGTGGAGGGGCTGCCGCTGGCGCAGGGCATCGACCGG
CAGTTCCGCGCCATGTCGCAGCTGTTCCCGGACGCGTCGCAGGCGTTCGT
G
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protein sequence of jgi.p|Trimin1|173119

>Trimin1|173119|e_gw1.100.130.1 ID=Trimin1|173119|e_gw1.100.130.1|Name=jgi.p|Trimin1|173119|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=67bp
MVQAGVTLEPWYYLDPQGNRQGPFSSHDMREWFEAGYFVEGLPLAQGIDR
QFRAMSQLFPDASQAFV
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mRNA from alignment at Contig_100:252905..253105-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10031 ID=mRNA_10031|Name=jgi.p|Trimin1|173119|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=201bp|location=Sequence derived from alignment at Contig_100:252905..253105- (Tribonema minus UTEX_B_3156 )
ATGGTCCAGGCGGGGGTGACGCTGGAGCCGTGGTACTACCTGGACCCGCA
GGGGAACCGGCAGGGACCGTTCTCGAGCCACGACATGCGCGAGTGGTTCG
AGGCGGGGTACTTTGTGGAGGGGCTGCCGCTGGCGCAGGGCATCGACCGG
CAGTTCCGCGCCATGTCGCAGCTGTTCCCGGACGCGTCGCAGGCGTTCGT
G
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Coding sequence (CDS) from alignment at Contig_100:252905..253105-

>mRNA_10031 ID=mRNA_10031|Name=jgi.p|Trimin1|173119|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=201bp|location=Sequence derived from alignment at Contig_100:252905..253105- (Tribonema minus UTEX_B_3156 )
ATGGTCCAGGCGGGGGTGACGCTGGAGCCGTGGTACTACCTGGACCCGCA
GGGGAACCGGCAGGGACCGTTCTCGAGCCACGACATGCGCGAGTGGTTCG
AGGCGGGGTACTTTGTGGAGGGGCTGCCGCTGGCGCAGGGCATCGACCGG
CAGTTCCGCGCCATGTCGCAGCTGTTCCCGGACGCGTCGCAGGCGTTCGT
G
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