Trimin1|353547|estExt_Genemark1.C_Ctg_1690024 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353547
Unique NameTrimin1|353547|estExt_Genemark1.C_Ctg_1690024
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length107
Homology
BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: A0A835Z7F8_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7F8_9STRA)

HSP 1 Score: 204 bits (518), Expect = 2.290e-66
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0
Query:    1 MNPAASGVQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARMEDQRIAVQAEIGEEQRARKP 106
            MNPAASGVQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARMEDQRIAVQAEIGEEQRARKP
Sbjct:    1 MNPAASGVQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARMEDQRIAVQAEIGEEQRARKP 106          
BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: D8LE94_ECTSI (Complex1_LYR_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE94_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 5.550e-26
Identity = 50/104 (48.08%), Postives = 73/104 (70.19%), Query Frame = 0
Query:    1 MNPAASGVQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARMEDQRIAVQAEIGEEQRAR 104
            MNPA + V+R+S +LYRDCLRL +H+  +S KG  +R ++ TEF+K++ ETDP ++  LK  A+RGLSNY +HES S D +LK RME  +    A++ + Q+ R
Sbjct:    1 MNPAQA-VERSSTRLYRDCLRLVDHIASKSPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADLKQRQQER 103          
BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: A0A7S2CG24_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CG24_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.630e-25
Identity = 50/97 (51.55%), Postives = 69/97 (71.13%), Query Frame = 0
Query:    1 MNPA------ASGVQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARMEDQRI 91
            MNPA         + +T+ QLYRDCLRL +HVGG+SAKG AM+ M++TEFRKH D TD   +  L+A AVR LSNY ++ES+S+D +LKA++  + +
Sbjct:    1 MNPAQFKGAMGDAIAKTTPQLYRDCLRLVSHVGGQSAKGRAMKMMVTTEFRKHADVTDEKELEALRANAVRALSNYMVYESSSKDPRLKAKINRENV 97          
BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: W4GBX7_9STRA (Complex1_LYR_dom domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=W4GBX7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.390e-24
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 0
Query:    8 VQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLK 83
            V RTS QLYRDCLRLANH+GG++ KG+A+R M+  EFRK I ETD  ++  LKA AVRGLSNY +  ++S+D KLK
Sbjct:    7 VSRTSLQLYRDCLRLANHIGGKTKKGEAIRSMLRAEFRKSIHETDEVKIENLKANAVRGLSNYLVLANSSKDGKLK 82          
BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: A0A485KXE9_9STRA (Aste57867_12385 protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485KXE9_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.890e-23
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 0
Query:    8 VQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLK 83
            V RTS QLYRDCLRLANH+GG++ KG+A+R M+  EFRKH+ ETD   +   KA AVRGLSNY +  ++S+D KLK
Sbjct:    6 VSRTSLQLYRDCLRLANHIGGKTKKGEAIRGMLRAEFRKHMHETDEIAIENAKANAVRGLSNYLVLANSSKDGKLK 81          
BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: A0A067CDF1_SAPPC (Complex1_LYR_dom domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CDF1_SAPPC)

HSP 1 Score: 92.4 bits (228), Expect = 3.100e-22
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 0
Query:    8 VQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLK 83
            V R+S QLYRDCLRLA H+GG S KG+A+R M+  EFRK + ETD  ++  LKA AVRGLSNY +  ++S+D KLK
Sbjct:    6 VSRSSLQLYRDCLRLAKHIGGNSRKGEAIRSMLRAEFRKSMHETDELKIENLKANAVRGLSNYLVLANSSKDGKLK 81          
BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: A0A7S2W976_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W976_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.600e-22
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 0
Query:    1 MNPAA------SGVQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARM 86
            MNPA       + V +T+ QLYRD LRL +H+GG+SAKG A+R  +S EFRKH    DP  +  L+A AVR LSNY L+ES S+D +L+ RM
Sbjct:    4 MNPATLAAALPNAVNKTTPQLYRDLLRLVSHIGGQSAKGQALRMTVSMEFRKHQHVEDPKEIEALRANAVRALSNYMLYESGSKDPRLRERM 95          
BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: A0A7S2KN15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KN15_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 9.420e-22
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 0
Query:    5 ASGVQRTSRQLYRDCLRLANHVG-GRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKL 82
            + GV RTS QL+RDCLRL  H+  G SAKG A+R M+ TEFRK+ DE D  ++ + K+AAVR L+NY L+ES ++DAKL
Sbjct:    2 SGGVNRTSLQLFRDCLRLVKHIAPGESAKGVALRAMVKTEFRKNKDEEDEGKIEVQKSAAVRALANYMLYESGTKDAKL 80          
BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: A0A8K1CT12_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT12_PYTOL)

HSP 1 Score: 90.9 bits (224), Expect = 1.290e-21
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 0
Query:    8 VQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARMED 88
            + RTS QLYRDC+RLA H+GG S KG A++++I  EF K   ETDP ++ +LKA AVRGLSNY +  ++S+D  L+A M++
Sbjct:    7 ITRTSIQLYRDCMRLAKHIGGTSKKGQAIKELIRREFEKGRHETDPEKIEVLKANAVRGLSNYLMMANSSKDKNLQAAMKN 87          
BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: H3GH29_PHYRM (Complex1_LYR_dom domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GH29_PHYRM)

HSP 1 Score: 89.7 bits (221), Expect = 3.670e-21
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 0
Query:    4 AASGVQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKL 82
            AA+ V RT+ QLYRDC+RLA H+GG S KG A++ ++  EF K  DETDP +V  LKA A+RGLSNY +  ++S+D +L
Sbjct:    3 AANQVTRTTIQLYRDCMRLAQHIGGNSKKGQAIKDLVRREFAKGRDETDPEKVEALKANAIRGLSNYLMLANSSKDQRL 81          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353547 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7F8_9STRA2.290e-66100.00Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D8LE94_ECTSI5.550e-2648.08Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
A0A7S2CG24_9STRA1.630e-2551.55Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W4GBX7_9STRA3.390e-2461.84Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
A0A485KXE9_9STRA1.890e-2360.53Aste57867_12385 protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A067CDF1_SAPPC3.100e-2259.21Complex1_LYR_dom domain-containing protein n=3 Tax... [more]
A0A7S2W976_9STRA3.600e-2252.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2KN15_9STRA9.420e-2256.96Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A8K1CT12_PYTOL1.290e-2153.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GH29_PHYRM3.670e-2154.43Complex1_LYR_dom domain-containing protein n=1 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR protein domainPFAMPF05347Complex1_LYRcoord: 13..67
e-value: 1.2E-9
score: 38.0
NoneNo IPR availablePANTHERPTHR47579:SF3COMPLEX 1 LYR PROTEINcoord: 8..80
NoneNo IPR availablePANTHERPTHR47579COMPLEX 1 LYR PROTEINcoord: 8..80
NoneNo IPR availableCDDcd20251Complex1_LYR_SFcoord: 13..69
e-value: 8.25858E-12
score: 53.703

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_169contigContig_169:207334..209023 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353547mRNA_17019Tribonema minus UTEX_B_3156 mRNAContig_169 207318..209023 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353547|estExt_Genemark1.C_Ctg_1690024 ID=Trimin1|353547|estExt_Genemark1.C_Ctg_1690024|Name=jgi.p|Trimin1|353547|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp
MNPAASGVQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDE
TDPARVAILKAAAVRGLSNYFLHESASRDAKLKARMEDQRIAVQAEIGEE
QRARKP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR_dom