mRNA_17019 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353547
Unique NamemRNA_17019
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: A0A835Z7F8_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7F8_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.390e-66
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 2 
Query:   17 MNPAASGVQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARMEDQRIAVQAEIGEEQRARKP 334
            MNPAASGVQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARMEDQRIAVQAEIGEEQRARKP
Sbjct:    1 MNPAASGVQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARMEDQRIAVQAEIGEEQRARKP 106
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BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: D8LE94_ECTSI (Complex1_LYR_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE94_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 3.330e-26
Identity = 50/104 (48.08%), Postives = 73/104 (70.19%), Query Frame = 2 
Query:   17 MNPAASGVQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARMEDQRIAVQAEIGEEQRAR 328
            MNPA + V+R+S +LYRDCLRL +H+  +S KG  +R ++ TEF+K++ ETDP ++  LK  A+RGLSNY +HES S D +LK RME  +    A++ + Q+ R
Sbjct:    1 MNPAQA-VERSSTRLYRDCLRLVDHIASKSPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADLKQRQQER 103
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BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: A0A7S2CG24_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CG24_9STRA)

HSP 1 Score: 101 bits (252), Expect = 9.770e-26
Identity = 50/97 (51.55%), Postives = 69/97 (71.13%), Query Frame = 2 
Query:   17 MNPA------ASGVQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARMEDQRI 289
            MNPA         + +T+ QLYRDCLRL +HVGG+SAKG AM+ M++TEFRKH D TD   +  L+A AVR LSNY ++ES+S+D +LKA++  + +
Sbjct:    1 MNPAQFKGAMGDAIAKTTPQLYRDCLRLVSHVGGQSAKGRAMKMMVTTEFRKHADVTDEKELEALRANAVRALSNYMVYESSSKDPRLKAKINRENV 97
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BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: W4GBX7_9STRA (Complex1_LYR_dom domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=W4GBX7_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.030e-24
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 2 
Query:   38 VQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLK 265
            V RTS QLYRDCLRLANH+GG++ KG+A+R M+  EFRK I ETD  ++  LKA AVRGLSNY +  ++S+D KLK
Sbjct:    7 VSRTSLQLYRDCLRLANHIGGKTKKGEAIRSMLRAEFRKSIHETDEVKIENLKANAVRGLSNYLVLANSSKDGKLK 82
[Close]
BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: A0A485KXE9_9STRA (Aste57867_12385 protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485KXE9_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.130e-23
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 2 
Query:   38 VQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLK 265
            V RTS QLYRDCLRLANH+GG++ KG+A+R M+  EFRKH+ ETD   +   KA AVRGLSNY +  ++S+D KLK
Sbjct:    6 VSRTSLQLYRDCLRLANHIGGKTKKGEAIRGMLRAEFRKHMHETDEIAIENAKANAVRGLSNYLVLANSSKDGKLK 81
[Close]
BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: A0A7S2W976_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W976_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.790e-23
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 2 
Query:   14 TMNPAA------SGVQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARM 274
            TMNPA       + V +T+ QLYRD LRL +H+GG+SAKG A+R  +S EFRKH    DP  +  L+A AVR LSNY L+ES S+D +L+ RM
Sbjct:    3 TMNPATLAAALPNAVNKTTPQLYRDLLRLVSHIGGQSAKGQALRMTVSMEFRKHQHVEDPKEIEALRANAVRALSNYMLYESGSKDPRLRERM 95
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BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: A0A067CDF1_SAPPC (Complex1_LYR_dom domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CDF1_SAPPC)

HSP 1 Score: 93.2 bits (230), Expect = 1.850e-22
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 2 
Query:   38 VQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLK 265
            V R+S QLYRDCLRLA H+GG S KG+A+R M+  EFRK + ETD  ++  LKA AVRGLSNY +  ++S+D KLK
Sbjct:    6 VSRSSLQLYRDCLRLAKHIGGNSRKGEAIRSMLRAEFRKSMHETDELKIENLKANAVRGLSNYLVLANSSKDGKLK 81
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BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: A0A7S2KN15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KN15_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 5.630e-22
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 2 
Query:   29 ASGVQRTSRQLYRDCLRLANHVG-GRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKL 262
            + GV RTS QL+RDCLRL  H+  G SAKG A+R M+ TEFRK+ DE D  ++ + K+AAVR L+NY L+ES ++DAKL
Sbjct:    2 SGGVNRTSLQLFRDCLRLVKHIAPGESAKGVALRAMVKTEFRKNKDEEDEGKIEVQKSAAVRALANYMLYESGTKDAKL 80
[Close]
BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: A0A8K1CT12_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT12_PYTOL)

HSP 1 Score: 91.7 bits (226), Expect = 7.700e-22
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 2 
Query:   38 VQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARMED 280
            + RTS QLYRDC+RLA H+GG S KG A++++I  EF K   ETDP ++ +LKA AVRGLSNY +  ++S+D  L+A M++
Sbjct:    7 ITRTSIQLYRDCMRLAKHIGGTSKKGQAIKELIRREFEKGRHETDPEKIEVLKANAVRGLSNYLMMANSSKDKNLQAAMKN 87
[Close]
BLAST of jgi.p|Trimin1|353547 vs. uniprot
Match: H3GH29_PHYRM (Complex1_LYR_dom domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GH29_PHYRM)

HSP 1 Score: 90.5 bits (223), Expect = 2.190e-21
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 2 
Query:   26 AASGVQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKL 262
            AA+ V RT+ QLYRDC+RLA H+GG S KG A++ ++  EF K  DETDP +V  LKA A+RGLSNY +  ++S+D +L
Sbjct:    3 AANQVTRTTIQLYRDCMRLAQHIGGNSKKGQAIKDLVRREFAKGRDETDPEKVEALKANAIRGLSNYLMLANSSKDQRL 81
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353547 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7F8_9STRA1.390e-66100.00Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D8LE94_ECTSI3.330e-2648.08Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
A0A7S2CG24_9STRA9.770e-2651.55Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W4GBX7_9STRA2.030e-2461.84Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
A0A485KXE9_9STRA1.130e-2360.53Aste57867_12385 protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A7S2W976_9STRA3.790e-2352.69Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A067CDF1_SAPPC1.850e-2259.21Complex1_LYR_dom domain-containing protein n=3 Tax... [more]
A0A7S2KN15_9STRA5.630e-2256.96Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A8K1CT12_PYTOL7.700e-2253.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GH29_PHYRM2.190e-2154.43Complex1_LYR_dom domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_169contigContig_169:207318..209023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353547|estExt_Genemark1.C_Ctg_1690024
BRITEko00000,ko03029
KEGG koko:K22069
DescriptionComplex 1 protein (LYR family)
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2CGFU@1|root,2S1BH@2759|Eukaryota
Evalue6.6e-24
Seed ortholog157072.XP_008868665.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_001390.1
TranscriptId353869
TrackFilteredModels1
ProteinId353547
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353547gene_17019Tribonema minus UTEX_B_3156 geneContig_169 207318..209023 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353547Trimin1|353547|estExt_Genemark1.C_Ctg_1690024Tribonema minus UTEX_B_3156 polypeptideContig_169 207334..209023 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17019_1exon_17019_1Tribonema minus UTEX_B_3156 exonContig_169 207318..207375 +
exon_17019_2exon_17019_2Tribonema minus UTEX_B_3156 exonContig_169 207600..207644 +
exon_17019_3exon_17019_3Tribonema minus UTEX_B_3156 exonContig_169 208137..208229 +
exon_17019_4exon_17019_4Tribonema minus UTEX_B_3156 exonContig_169 208883..209023 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_17019UTR5_17019Tribonema minus UTEX_B_3156 five_prime_UTRContig_169 207318..207333 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17019CDS_17019Tribonema minus UTEX_B_3156 CDSContig_169 207334..207375 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17019 ID=mRNA_17019|Name=jgi.p|Trimin1|353547|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=337bp|location=Sequence derived from alignment at Contig_169:207318..209023+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGTGGGTCGCTCACGATGAACCCTGCAGCAAGCGGCGTGCAGCGGACCA
GCCGCCAGCTATACCGGGATTGCCTGCGGCTGGCCAATCACGTTGGAGGA
CGGAGTGCCAAAGGAGATGCCATGCGGAAAATGATCAGCACGGAGTTTCG
GAAGCACATTGACGAAACGGACCCCGCGCGAGTTGCTATCCTCAAGGCAG
CGGCTGTGCGCGGCCTGTCCAACTACTTCTTGCACGAGAGTGCGTCACGC
GATGCGAAGCTCAAGGCCAGAATGGAGGACCAACGCATAGCGGTGCAGGC
GGAAATAGGGGAGGAGCAGAGAGCCAGAAAACCGTGA
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protein sequence of jgi.p|Trimin1|353547

>Trimin1|353547|estExt_Genemark1.C_Ctg_1690024 ID=Trimin1|353547|estExt_Genemark1.C_Ctg_1690024|Name=jgi.p|Trimin1|353547|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp
MNPAASGVQRTSRQLYRDCLRLANHVGGRSAKGDAMRKMISTEFRKHIDE
TDPARVAILKAAAVRGLSNYFLHESASRDAKLKARMEDQRIAVQAEIGEE
QRARKP*
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mRNA from alignment at Contig_169:207318..209023+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17019 ID=mRNA_17019|Name=jgi.p|Trimin1|353547|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1706bp|location=Sequence derived from alignment at Contig_169:207318..209023+ (Tribonema minus UTEX_B_3156 )
GGGTGGGTCGCTCACGATGAACCCTGCAGCAAGCGGCGTGCAGCGGACCA
GCCGCCAGGTGTGTGCCAGAATGCAAACTTGAGTTTGTCTTTGCTCCACT
GTGCACAGTGTTTGCAGCTTTCTGAACTTGCGCGTTGCCATATGGAAGCT
TCTGGTGTGGTTAACCGTGGACGTTGTGGTGTAGCCAAATCACTGAGCAG
CACAATGCTTTCGCAAATTTGGGTACAGCACACACAAAATATCCTTTGCT
GTCATTCGTTGTCAACTTGCGTGCTTGCGCAGCTATACCGGGATTGCCTG
CGGCTGGCCAATCACGTTGGAGGACGGGTAAGCTGCTGTCTTGCTAAATT
GGAATCACTGCAAATTAACGACTTTTAATGAATAGGCAACCCTGCGGAAA
AATTGTGGAGACTGCGATTGTACACTTCTCAGGTTGCCGAGCGTATCAAT
CACAGCTTGGTTGGTCTCTGTGGCTTGCTGGCATTTCAAATGGGTAGCCT
CTTGCGCTTGCAGAGTTCAAATTATGCTTCAGATCATGGTCGTGACTCGC
AAGCGATGCCTGTCGGTGAGTGCAATGCTTTTGATGATCTCTTTCACTTC
ATGATAACACTGCATCAATTCAATGCAGCAGATTTTCACTGGATATGCAT
TGCCAGGCTGATGTACCAGCGGAGGGACCGCCTCACTGATACTCTGCCTG
CTGAGTGGGCAGTTTAAAGAGCTTCAACGAGCGCAGCTTGATCGTCAGTG
GTTGTCGCTGCCTTGACCTTTTCTGCATGTTCACTTTTTTGACTGCACTC
CACTCTACTGCTTCTGCAGAGTGCCAAAGGAGATGCCATGCGGAAAATGA
TCAGCACGGAGTTTCGGAAGCACATTGACGAAACGGACCCCGCGCGAGTT
GCTATCCTCAAGGTATGTTGGTATCCTGCACCTACATGTAATCTTTGCAG
GGTTCTTGCTTGTACTTTTGACACTGACATTTGCCTGACCTGCTTCGATT
GACGTGCAGTGATGTGCGAAGAGGGAAGGCTTGTCAGCTTCTGGGTGACC
TCGCATGTGTCTAGCTCAGGCCATATTTGCATGATCATATTTTGATTTGT
TCAAAGGAGGGTTCCCTTGTGCGTTTAGTGCTCTTGCTTCACACATCCCA
CCTGCAAGACGACTGCAACGACGTGGTGCCGTGCCAACGCTTCGTATCGC
CAGTTACAAAAATAATCTCGTACTTGAAGGAGCGAGCACGGACAGCGGTA
ATAATCAAGGTTATACAAAATGTCTTTGCCCAAGATGCGACAAACATGCA
CTGTGCTGGATCCTATGTAGGTACTCACACGTGTTGTTTGATGAAAAATG
AACACAGTCCCACTGTGATTGACTGGGTGGATTCCAATCTTGGGCCCAAC
AAGCTCACAGTCATCCCAAGGCATGGCTGAGTGCAATCACAACATGATAG
TGAATTGATTGGCCATCAGAAACGTTTTGAGACCGTGCACATCGCCTTGT
CACGCACTGCAGAACGCAAGCAGTGACTCTGCCATTAACTCTCATGCCCG
TGTGTCATTGCTCAGGCAGCGGCTGTGCGCGGCCTGTCCAACTACTTCTT
GCACGAGAGTGCGTCACGCGATGCGAAGCTCAAGGCCAGAATGGAGGACC
AACGCATAGCGGTGCAGGCGGAAATAGGGGAGGAGCAGAGAGCCAGAAAA
CCGTGA
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Coding sequence (CDS) from alignment at Contig_169:207318..209023+

>mRNA_17019 ID=mRNA_17019|Name=jgi.p|Trimin1|353547|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_169:207318..209023+ (Tribonema minus UTEX_B_3156 )
ATGAACCCTGCAGCAAGCGGCGTGCAGCGGACCAGCCGCCAGCTATACCG
GGATTGCCTGCGGCTGGCCAATCACGTTGGAGGACGGAGTGCCAAAGGAG
ATGCCATGCGGAAAATGATCAGCACGGAGTTTCGGAAGCACATTGACGAA
ACGGACCCCGCGCGAGTTGCTATCCTCAAGGCAGCGGCTGTGCGCGGCCT
GTCCAACTACTTCTTGCACGAGAGTGCGTCACGCGATGCGAAGCTCAAGG
CCAGAATGGAGGACCAACGCATAGCGGTGCAGGCGGAAATAGGGGAGGAG
CAGAGAGCCAGAAAACCGTGA
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