mRNA_10011 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: A0A835ZI68_9STRA (Tudor-knot domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI68_9STRA) HSP 1 Score: 494 bits (1272), Expect = 4.080e-177 Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 1 Query: 1 MHFLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKAELMARGEEEGETVRRRSLNVACMAAPCGCSVM 705 MHFLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKAELMARGEEEGETVRRRSLNVACMAAPCGCSVM Sbjct: 1 MHFLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKAELMARGEEEGETVRRRSLNVACMAAPCGCSVM 235
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: A0A835ZFT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT0_9STRA) HSP 1 Score: 268 bits (685), Expect = 4.150e-87 Identity = 138/239 (57.74%), Postives = 169/239 (70.71%), Query Frame = 1 Query: 7 FLSLPELG-TLARLSKSWRQLSEHDYLWREPYKARFKISDSL--LAAGSDAA--VTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKAELMARGEEEGETVRRRSL-NVACMAAPCGCSVM 705 FL+L E G + +S+ WRQL EH++LWREPY RFK LA ++A P K+ FARRL+ PQVGDRVEVAWRGKFRLESLE+++GLAWWLA++V D +RYKVHYPGWE RWDE+V RERLRWGND RAA+L + VGD VE+WCGG +VPGAWLEGRVS IR +R +LGD++A G FS+ RCRLV K A + EG + R+L N+A + CGCSVM Sbjct: 43 FLTLEERGKAVCCVSRKWRQLGEHNHLWREPYLTRFKFHSPQEDLATHTEAQELAQPGPKVKDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECDADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEGFFSVTEERCRLVSKGA-SAPPQSEGRSDTARALCNIARQS--CGCSVM 278
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: D7FY36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY36_ECTSI) HSP 1 Score: 189 bits (480), Expect = 2.130e-55 Identity = 92/169 (54.44%), Postives = 113/169 (66.86%), Query Frame = 1 Query: 175 KEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKAELMARGEE----EGETVRRRSLNV 669 K + RRLL P VGD V+VAW+GKFRLESLEV+ G AWWLA VV + + YKVHYPGWEP+WDEWV R+RLRWGN+ AA L G P++ GD VEVWC G+HVPGAWLE V + +R YLG++L +G F RL++K + G E RRRS +V Sbjct: 147 KGRYKRRLLDPHVGDEVQVAWKGKFRLESLEVYDGTAWWLARVVDKGEKPGYYKVHYPGWEPKWDEWVVRDRLRWGNEHLAAPLKGIPLQAGDAVEVWCKGLHVPGAWLEAVVYEVEKERVYLGEVLTSGHFWARTEHVRLIQKGPVDDDGGEFRLGYTSACRRRSNSV 315
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: W7T606_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T606_9STRA) HSP 1 Score: 182 bits (461), Expect = 1.540e-51 Identity = 92/233 (39.48%), Postives = 132/233 (56.65%), Query Frame = 1 Query: 7 FLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKAELMARGEEEGETVRRRSLNVACMAAPCGCSVM 705 F+S+ ELG A + + W++ + +W+ Y RF S A + + PLS + F RLL P VGD VEVAW+GKFRLES++++ GLAWW A VV + ++ RYK+HYPGW+ RWDEWV+R+RLRW + L + D VE+WC G +VPGAWLE +V ++ +G +L++G + R R+ K + G++ R A A CSVM Sbjct: 208 FMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDASTGIGL--PLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRW----TVEQDLNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWVNRERVRISPKGGARSLGKQGASNFFSRDAAAAAAAVGASCSVM 434
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: A0A4D9D060_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D060_9STRA) HSP 1 Score: 168 bits (426), Expect = 7.790e-48 Identity = 80/186 (43.01%), Postives = 114/186 (61.29%), Query Frame = 1 Query: 7 FLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAG 564 F+S+ ELG A + + W++ + +W+ Y RF S A + + P+S F RLL P VGD VEVAW+GKFRLES++++ GLAWW A VV + ++ RYK+HYPGW+ RWDEWV R+RLRW + L + D VE+WC G +VPGAWLE +V ++ +G +L++G Sbjct: 86 FMSISELGMAASVCQQWKETVQSGAVWKPLYIKRFHFLHSPDDASTGIGL--PVSYHALFRARLLDPYVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRW----TVEQDLNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSG 265
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: A0A7S4A403_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A403_9STRA) HSP 1 Score: 159 bits (403), Expect = 9.020e-44 Identity = 96/234 (41.03%), Postives = 124/234 (52.99%), Query Frame = 1 Query: 1 MHFLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVV------ARSDDCRR----------YKVHYPGWEPRWDEWVSRERLRW-GNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKAE--------LMARG 627 + FL + TL+ +S+ W LS D LWR+ Y RF + + K+ + +RL P VGD VEVAWRGKFRLESLE++ G AWW+A VV A S R YKV +PGWE RWDEWVSR+RLRW + + A L + D VEVWCG +VPGAWLE V IR D +G +L+ G+ + +R R R + L+ARG Sbjct: 106 LSFLDVTAHTTLSTVSRDWLSLSSEDALWRDHYLNRFSGGSD--EGDGETSADEYEDYKQEYKQRLEDPHVGDDVEVAWRGKFRLESLEIYRGTAWWVAVVVDKVALDAASGSPGRGRKIHAAKAWYKVTFPGWEGRWDEWVSRDRLRWRAKNTQEADAL----KPRDFVEVWCGSQNVPGAWLEASVQKIRGDAVEVGRVLSTGSLWVDRSRVRRARSSSSRKVKPVGLLARG 333
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: D8LI95_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI95_ECTSI) HSP 1 Score: 158 bits (399), Expect = 1.410e-43 Identity = 84/202 (41.58%), Postives = 116/202 (57.43%), Query Frame = 1 Query: 1 MHFLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAG--TFSIPLARCRLV 600 M L++ +LG + ++K WR +E D +WR + RF+ + A K+ RL P VGD+VEV+W G+FRLESL+VF G +WW A VV + D + YK+HYPGW+ WDEWV R+RLRW D L V + VEVWC G HV GAWL+ RV I+ D+ L ++LA+ T +P ++ R V Sbjct: 38 MELLNMVDLGQVCCVNKDWRNAAEEDAVWRFWWARRFREDPPPQRGRARAG-----HLKQLHRYRLEDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKMDGFK-YKIHYPGWDSNWDEWVVRDRLRWPVDPS---YLSTTFRVREVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTVWVPRSKVRRV 230
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: A0A8J2SC81_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SC81_9STRA) HSP 1 Score: 157 bits (397), Expect = 6.080e-43 Identity = 84/217 (38.71%), Postives = 119/217 (54.84%), Query Frame = 1 Query: 10 LSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSD---------DC-------RRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKAE 612 L + L +A +S++ R+ + D WR Y RF +D A S +E+F +RL P GDRVE+AWRG+FRLE LEV+ GLAWW A+VV + D DC R+YKVHY W+ RWDEWV+R++LRW ++ GD VEVWC G VPGAWL V+ + + +GD+ ++G + R RL+++ + Sbjct: 99 LDVKNLAAMAAVSRAARRAASSDAAWRPQYARRFGAADDASEHFDFGA-----SLRESFRQRLGDPAPGDRVEIAWRGRFRLEGLEVYRGLAWWAAEVVEKRDAXXXXXXAPDCPLDDRRARKYKVHYVHWDARWDEWVARDQLRWPVPEGRTGVVAS----GDDVEVWCSGSAVPGAWLRAVVTAVEGELYCVGDVASSGRLWVRRDRVRLIQRKQ 306
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: A0A7S3K1B0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1B0_9STRA) HSP 1 Score: 138 bits (347), Expect = 2.050e-34 Identity = 95/302 (31.46%), Postives = 134/302 (44.37%), Query Frame = 1 Query: 7 FLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPL--SCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLA--------DVVARSDDC--------------------------------------------------------------RRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVR-KAELMARGEEEGET-VRRRSLNV-ACMAAP 687 F +L LA +S+ ++QL++ D W+ Y F S A VT S KE++ +R+ P GDRVEVAW+G+FRLE LEV+ GLAWW A D+ + +D +RY+VHY W+ RWDEWVSRE+LRW +E+GD VEVWC G VPGAWL V + D +G++ ++G + R RLVR KA+ + ++ +T V RR + +C+ AP Sbjct: 151 FFPPKQLAHLASVSRGFKQLADSDASWQATYDRAF--------GNSKAGVTYDYGASLKESYHQRIRDPSTGDRVEVAWQGRFRLEGLEVYRGLAWWAAEVAEKRPNDIASNEEDMIPPEQFPPQHIDNQVVPHEQNHEVDLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNTSKRYRVHYLNWDSRWDEWVSREQLRWP----VQEGKNCTIEIGDDVEVWCSGNTVPGAWLRAVVDAVDDDLFCVGNVASSGHLWVSRDRVRLVRRKADRVLETTQDYDTAVHRRGRRLPSCLIAP 440
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: A0A7S2XXB7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXB7_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 2.430e-22 Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 1 Query: 331 YKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVE---VGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRK 606 YK+HYPGW+ RWDEWV R RLRW + +P+E V D VEVWC G +VPGAWLE +V I+ ++ ++G ML++G + R RL K Sbjct: 1 YKIHYPGWDTRWDEWVPRNRLRWA-------MHHNPMENFQVNDRVEVWCTGSNVPGAWLEAQVKAIKGEQIFVGKMLSSGPLWVAKTRVRLCPK 88 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10011 ID=mRNA_10011|Name=jgi.p|Trimin1|173095|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=708bp|location=Sequence derived from alignment at Contig_100:170538..171245+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCACTTCCTGTCGCTACCAGAGCTTGGCACCCTGGCGCGCCTCTCCAAback to top protein sequence of jgi.p|Trimin1|173095 >Trimin1|173095|e_gw1.100.83.1 ID=Trimin1|173095|e_gw1.100.83.1|Name=jgi.p|Trimin1|173095|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=236bp MHFLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAback to top mRNA from alignment at Contig_100:170538..171245+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10011 ID=mRNA_10011|Name=jgi.p|Trimin1|173095|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=708bp|location=Sequence derived from alignment at Contig_100:170538..171245+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_100:170538..171245+ >mRNA_10011 ID=mRNA_10011|Name=jgi.p|Trimin1|173095|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=708bp|location=Sequence derived from alignment at Contig_100:170538..171245+ (Tribonema minus UTEX_B_3156 )back to top |