mRNA_17009 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: A0A835Z6E3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E3_9STRA) HSP 1 Score: 576 bits (1484), Expect = 1.740e-207 Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 1 Query: 1 MPQNFLRWRGTHAPDNPNLTEKFQCTTSTLPCAAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPMAGLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNASGMPVPPIIIPGMGGGDSGNAPPGT 879 MPQNFLRWRGTHAPDNPNLTEKFQCTTSTLPCAAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPMAGLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNASGMPVPPIIIPGMGGGDSGNAPPGT Sbjct: 1 MPQNFLRWRGTHAPDNPNLTEKFQCTTSTLPCAAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPMAGLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNASGMPVPPIIIPGMGGGDSGNAPPGT 293
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: D7G1U0_ECTSI (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1U0_ECTSI) HSP 1 Score: 259 bits (663), Expect = 3.470e-81 Identity = 134/238 (56.30%), Postives = 178/238 (74.79%), Query Frame = 1 Query: 97 AAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPMAGLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNASG 810 A+K+EG E+Q++T EL+ GQ +RAEAGNL++M +G+ MDT+TGGG RVITGQ++ VTD+ +R +SG +V LGT +P+KI+RLPLA +GG V+CQRGAFLAGS TIDI TE T+ MAG FGGEGFVLQRL+G+GDAFV A G +++R+L GE LRV++GS+V FS++V Y V T G KN+VFG +G+F+ L GPGTV+LQG+PFDR+V I + +P G Sbjct: 2 ASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYV----NRGDASG------KVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELSEGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLAGPGTVFLQGLPFDRMVDQIARRIPGGRGG 229
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: A0A7S2GIV3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GIV3_9STRA) HSP 1 Score: 241 bits (615), Expect = 3.870e-75 Identity = 132/253 (52.17%), Postives = 177/253 (69.96%), Query Frame = 1 Query: 97 AAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPMA-GLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNASGMPVPPIIIPGMGGG 852 A ++EG + Q++ VEL GQ LRAE+GNLIYMTEGV M+T GGV +R+++G ++ +++F T SG G V LGT +P+KILR+ L ++GG ++CQ+GAFLAGSD I+I T+ G FGGEGFVLQ+LSGEGDA+V A G ++ + L+ GE LRVTAGSLV F +++DY V G+KN+VFG +G+F+ TLTGPGTVYLQGM FDR+V I + +P+ GMP I + GMGGG Sbjct: 72 AGRVEGGDAQIVHVELLPGQTLRAESGNLIYMTEGVEMETVALGGVSSGFARLLSGGTMFLSNF------EYTGSGS----GTVALGTDVPSKILRMHLPNYGGEIICQKGAFLAGSDDINIEMAFTKSFTTGFFGGEGFVLQKLSGEGDAYVKATGALVTKQLEEGETLRVTAGSLVAFEASIDYDVQMMKGMKNVVFGGEGLFITTLTGPGTVYLQGMQFDRMVDQIARRIPRGG-GMP---IFMGGMGGG 310
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: A0A1W0A5V3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5V3_9STRA) HSP 1 Score: 245 bits (626), Expect = 4.230e-75 Identity = 130/257 (50.58%), Postives = 181/257 (70.43%), Query Frame = 1 Query: 97 AAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPM-AGLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNASGMPVPPIIIP-GMGGGDSG 861 AA+IEG ETQ++ +++ Q+LR+E+G +IYMT+G+ MDT T GG+ + L+R++TGQ+ VT++ T G D+ G V +GTS+P+KIL +PL +GGS++CQ+GAFL GS TI I E T+ AG FGGEGFVLQRL+G GDAF+SA G ++ R LK GEV R+++G LV F +V + +T+ G+KN++F G+F+ TLTGPG VYLQG+PFDR+V I +P G P II+P G+GGG SG Sbjct: 107 AARIEGTETQIVHIDIGPNQKLRSESGAMIYMTDGIEMDTHTAGGISQGLTRMMTGQNFFVTEY--------TYKGTDT--GTVAMGTSVPSKILHMPLEKYGGSLICQKGAFLCGSHTISIEMEFTKNFGAGFFGGEGFVLQRLNGPGDAFISANGALIERTLKEGEVFRISSGCLVAFEPSVHFDITSVSGVKNVLFSGTGLFVTTLTGPGRVYLQGLPFDRMVGEIASRIPGGRGGSP---IIMPMGLGGGSSG 350
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: A0A7S2WLF3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLF3_9STRA) HSP 1 Score: 240 bits (612), Expect = 1.130e-74 Identity = 128/257 (49.81%), Postives = 178/257 (69.26%), Query Frame = 1 Query: 97 AAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPMA-GLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNAS-GMPVPPIIIPGMGGGDSG 861 A++IEG+++Q++TV L+ GQ LRAE+G ++YMT+GV M+TSTGGGVG R +TGQ+V ++D+ T G R G V LGT P+KI+RL L ++ G +VCQ+GA L S T+DI TE T+ + G FGGEGFVLQ L GEGD FV A G +++++L GE LR+++GSLV FS TV+Y + G KN++FG +G+F+ TLTGPGT++LQGMP R++ I + +P G+ +P IPGMG G SG Sbjct: 54 ASRIEGSDSQIVTVRLEPGQVLRAESGGMMYMTDGVEMNTSTGGGVGAGFKRFLTGQNVFISDY--------TYKG--DRFGIVALGTDFPSKIMRLSLPEWDGKIVCQKGALLCASHTVDIETEFTKKFSTGFFGGEGFVLQALLGEGDVFVKAGGSIIKKELNPGEQLRISSGSLVAFSQTVEYDIQMMPGFKNVLFGGEGLFVTTLTGPGTIWLQGMPPQRMISEIARRVPSGGGLGLAIP---IPGMGSGGSG 297
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: A0A7S3PYP5_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PYP5_9STRA) HSP 1 Score: 235 bits (600), Expect = 1.020e-72 Identity = 126/253 (49.80%), Postives = 177/253 (69.96%), Query Frame = 1 Query: 100 AKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPMA-GLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNAS-GMPVPPIIIPGMGGG 852 +KIEGNE+Q++TV L+ GQ LRAE+G ++YMT+GV M+T+TGGG+ R++TGQ+V ++D+ + +G D+ G VCLGTS PAKILRL + ++GG +VCQ+GA L S T+DI E T+ + G FGGEGFVLQ L+GEGD FV+A G +++R+L+ GE LR+++G LV F+ VDY V G KN++FG +G+F+ TL GPG V+LQG P R++ I + +P G+ VP I GMGGG Sbjct: 78 SKIEGNESQIVTVALEPGQVLRAESGAMMYMTDGVEMNTTTGGGMSAGFQRMLTGQNVFISDY--------SYNGPDNTKGMVCLGTSFPAKILRLNVDEYGGKIVCQKGALLCASHTVDIQMEFTKKFSTGFFGGEGFVLQALTGEGDVFVTAGGTLIKRELEEGEELRISSGCLVGFTEGVDYDVEMIKGYKNVLFGGEGLFITTLKGPGLVWLQGQPPQRMISEIARRVPSGGGLGLAVP---IGGMGGG 319
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: A0A7S4QQY9_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QQY9_9STRA) HSP 1 Score: 234 bits (598), Expect = 6.620e-72 Identity = 123/252 (48.81%), Postives = 173/252 (68.65%), Query Frame = 1 Query: 97 AAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPM-AGLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNASGMPVPPIIIPGMGG 849 A+KIEG E+Q++TV ++ GQ LRAE+G L+YMT+G+ M+T++GGG+ R++TGQ+V ++D+ T +G G V LGT P+KI+RL +GG +VCQ+GA L S TIDI E + AG FGGEGFVLQ L+G+GD FV A G ++R++L++GE LR+++G LVCFS VD+ V G KN++FG +G+F+ TLTGPGTV+LQG P R++ I + +P G+ VP IPGMGG Sbjct: 111 ASKIEGKESQIVTVAIEPGQVLRAESGALMYMTDGIEMNTTSGGGMSAGFKRLLTGQNVFISDY--------TYTGESGTRGLVALGTDFPSKIIRLNPNQYGGKIVCQKGALLCASHTIDIEMEFAKKFTAGFFGGEGFVLQALTGDGDVFVKAGGTMIRKELEAGEQLRISSGCLVCFSQGVDFDVQMMPGFKNVLFGGEGLFVTTLTGPGTVWLQGQPPQRMISEIARRVPSGGIGLAVP---IPGMGG 351
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: A0A7S2FBI8_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBI8_9STRA) HSP 1 Score: 234 bits (596), Expect = 1.710e-71 Identity = 129/253 (50.99%), Postives = 180/253 (71.15%), Query Frame = 1 Query: 97 AAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPM-AGLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNASGMPVPPIIIPGMGGG 852 AAKIEG ++Q++TV++ GQ LRAE+GNLIYM++GV M+TS GG+ +R + G SV +++F R T + G V LGT MP+KI+++ + D+ G ++CQ+GAFLAGSDT++I ++ AG FGGEGFVLQ+LSGEGDAFV A G ++ ++LK+GE LRVT+GS+V F +V+Y V G+KN+VFG +G+F+ TLTGPG VYLQGM FDR+V I + +P + G+ +P I GMGGG Sbjct: 70 AAKIEGGDSQIVTVDILPGQALRAESGNLIYMSDGVEMETSATGGMSAGFARYMAGGSVFLSNF------RYTG---EVGKGSVALGTDMPSKIMKMTVKDYEGGLMCQKGAFLAGSDTVNIEMGFSKSFTAGFFGGEGFVLQKLSGEGDAFVKATGALISKELKAGEKLRVTSGSIVAFEGSVEYDVQMMTGMKNVVFGGEGLFITTLTGPGRVYLQGMQFDRMVSEIARRIP-SGGGIFMP---IGGMGGG 309
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: A0A4D9D418_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D418_9STRA) HSP 1 Score: 232 bits (591), Expect = 1.020e-70 Identity = 119/239 (49.79%), Postives = 169/239 (70.71%), Query Frame = 1 Query: 97 AAKIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPM-AGLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALPQNASG 810 A+++EG ETQ++ V+L+ GQ LRAE G+L+YMT+GV ++TS GGG+ L R +TG+++ ++DF G + G V LGT P+KI+R+ LAD+GGS++CQ+GAFL G+ + E TR +G FGGEGFVLQRL+G GDAF+ A G ++RR+L GE LRVT+GSLV F+ +V Y V G+KN++FG +G+F+ TLTGPG+V+LQ MPFDR+V +I +P+ G Sbjct: 31 ASRVEGAETQIVVVDLEPGQVLRAETGSLLYMTDGVELETSLGGGLSAGLKRYMTGENMFISDFKYH--------GPEGSSGTVALGTEFPSKIIRVTLADYGGSLICQKGAFLCGTHLTGMEMEFTRSFKSGFFGGEGFVLQRLTGGGDAFIKAGGALIRRELSEGETLRVTSGSLVGFAPSVQYDVEMLKGVKNVMFGGEGLFVTTLTGPGSVFLQSMPFDRVVASIASRVPRGGLG 261
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Match: B7GD59_PHATC (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GD59_PHATC) HSP 1 Score: 226 bits (575), Expect = 2.710e-70 Identity = 116/232 (50.00%), Postives = 160/232 (68.97%), Query Frame = 1 Query: 103 KIEGNETQVLTVELQRGQRLRAEAGNLIYMTEGVVMDTSTGGGVGKALSRVITGQSVMVTDFFLEPTSRRTSSGHDSRVGQVCLGTSMPAKILRLPLADFGGSVVCQRGAFLAGSDTIDISTEVTRPMA-GLFGGEGFVLQRLSGEGDAFVSACGHVMRRDLKSGEVLRVTAGSLVCFSSTVDYGVTTAGGLKNIVFGTDGVFLATLTGPGTVYLQGMPFDRLVRAIGKALP 795 K+EGNE+Q+LTV L+ GQ LRAE+G ++YMT+GV M+T++GGG+ R++TGQ+ ++D+ E G VG V LGT P+KI+RL L ++GG +VCQ+GA L S T+DI E ++ M+ G FGGEGFVLQ LSGEGD FV A G ++RRDLK GE LR+++G LV F++ VDY V G N+ G +G+F+ TLTGPG V+LQG P R++ I + +P Sbjct: 1 KVEGNESQILTVALEPGQVLRAESGAMMYMTDGVQMNTTSGGGLSSGFQRMLTGQNFFISDYSFE--------GEPGTVGHVALGTDFPSKIVRLNLEEYGGKIVCQKGALLCASHTVDIQMEYSKNMSTGFFGGEGFVLQGLSGEGDVFVKAGGTLIRRDLKEGEQLRISSGCLVAFTNGVDYDVQMVKGFANVFAGGEGLFMTTLTGPGVVWLQGQPAQRMISEIARRVP 224 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178390 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17009 ID=mRNA_17009|Name=jgi.p|Trimin1|178390|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=882bp|location=Sequence derived from alignment at Contig_169:128184..131759+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCTCAAAACTTTTTGCGTTGGCGGGGTACCCACGCACCTGACAATCCback to top protein sequence of jgi.p|Trimin1|178390 >Trimin1|178390|e_gw1.169.56.1 ID=Trimin1|178390|e_gw1.169.56.1|Name=jgi.p|Trimin1|178390|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=294bp MPQNFLRWRGTHAPDNPNLTEKFQCTTSTLPCAAKIEGNETQVLTVELQRback to top mRNA from alignment at Contig_169:128184..131759+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17009 ID=mRNA_17009|Name=jgi.p|Trimin1|178390|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3576bp|location=Sequence derived from alignment at Contig_169:128184..131759+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_169:128184..131759+ >mRNA_17009 ID=mRNA_17009|Name=jgi.p|Trimin1|178390|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=882bp|location=Sequence derived from alignment at Contig_169:128184..131759+ (Tribonema minus UTEX_B_3156 )back to top |