Trimin1|353526|estExt_Genemark1.C_Ctg_1680022 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353526
Unique NameTrimin1|353526|estExt_Genemark1.C_Ctg_1680022
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length829
Homology
BLAST of jgi.p|Trimin1|353526 vs. uniprot
Match: A0A835Z6V7_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6V7_9STRA)

HSP 1 Score: 997 bits (2578), Expect = 0.000e+0
Identity = 828/828 (100.00%), Postives = 828/828 (100.00%), Query Frame = 0
Query:    1 MAIKWHLAPSAGGDKVLLTPDQPWHYQVSGARENTLTFLARSDGTVTVSKPAAWEPAYTCTLNDRCLDDGVTALADQDSISVNFNFTHDGADDDPCHIVEQAFTVVLAEGSVPTPAHHQDQSAKRTAXXXXXRDTSGRXXXXRANSGDCTDCDPAAECSSAPQPPQVVPLLLQLPVPSVVSPSSGRQPCPSDDPCKSSGGXXXXXXXXXSDSGARGAGVTSANAAMLSEISAQAAHCASLQDVAGLVNTAVSAITRGWQQNERERVAALEAERAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAADVKVAEAERACXXXXXXAQDAKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERDSLISRAQNAEISKGILEATATTAAQRAAADAAELTRLRDDLTSIRALYTAEQQRADAAETAAAAERCIALRGAAAFSAHTLQLAADAAAARSXXXXXXXXXXXXXXXXXXXXXXEAAVGSASEELECAVCMELMVEPVAVSCGHLLCACCLRDWRRQCGDGRPPTCPTCQTDVKGSTPMKQMKNAIGHLIDSGLLPADDVANYRNRIGDTASAAPAHAAPLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAMAHAPPVAGRGFGPPRVRGETGTVNRNCSPTRAYGGNAAPQGQFRGKAPDARCRASTALLRSAVERRXXXXXXXXXXXXXXXXXXXXXXARAGFRALLDRPTD 828
            MAIKWHLAPSAGGDKVLLTPDQPWHYQVSGARENTLTFLARSDGTVTVSKPAAWEPAYTCTLNDRCLDDGVTALADQDSISVNFNFTHDGADDDPCHIVEQAFTVVLAEGSVPTPAHHQDQSAKRTAXXXXXRDTSGRXXXXRANSGDCTDCDPAAECSSAPQPPQVVPLLLQLPVPSVVSPSSGRQPCPSDDPCKSSGGXXXXXXXXXSDSGARGAGVTSANAAMLSEISAQAAHCASLQDVAGLVNTAVSAITRGWQQNERERVAALEAERAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAADVKVAEAERACXXXXXXAQDAKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERDSLISRAQNAEISKGILEATATTAAQRAAADAAELTRLRDDLTSIRALYTAEQQRADAAETAAAAERCIALRGAAAFSAHTLQLAADAAAARSXXXXXXXXXXXXXXXXXXXXXXEAAVGSASEELECAVCMELMVEPVAVSCGHLLCACCLRDWRRQCGDGRPPTCPTCQTDVKGSTPMKQMKNAIGHLIDSGLLPADDVANYRNRIGDTASAAPAHAAPLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAMAHAPPVAGRGFGPPRVRGETGTVNRNCSPTRAYGGNAAPQGQFRGKAPDARCRASTALLRSAVERRXXXXXXXXXXXXXXXXXXXXXXARAGFRALLDRPTD
Sbjct:    1 MAIKWHLAPSAGGDKVLLTPDQPWHYQVSGARENTLTFLARSDGTVTVSKPAAWEPAYTCTLNDRCLDDGVTALADQDSISVNFNFTHDGADDDPCHIVEQAFTVVLAEGSVPTPAHHQDQSAKRTAXXXXXRDTSGRXXXXRANSGDCTDCDPAAECSSAPQPPQVVPLLLQLPVPSVVSPSSGRQPCPSDDPCKSSGGXXXXXXXXXSDSGARGAGVTSANAAMLSEISAQAAHCASLQDVAGLVNTAVSAITRGWQQNERERVAALEAERAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAADVKVAEAERACXXXXXXAQDAKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERDSLISRAQNAEISKGILEATATTAAQRAAADAAELTRLRDDLTSIRALYTAEQQRADAAETAAAAERCIALRGAAAFSAHTLQLAADAAAARSXXXXXXXXXXXXXXXXXXXXXXEAAVGSASEELECAVCMELMVEPVAVSCGHLLCACCLRDWRRQCGDGRPPTCPTCQTDVKGSTPMKQMKNAIGHLIDSGLLPADDVANYRNRIGDTASAAPAHAAPLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAMAHAPPVAGRGFGPPRVRGETGTVNRNCSPTRAYGGNAAPQGQFRGKAPDARCRASTALLRSAVERRXXXXXXXXXXXXXXXXXXXXXXARAGFRALLDRPTD 828          
BLAST of jgi.p|Trimin1|353526 vs. uniprot
Match: A0A7S3L8H1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8H1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.680e-7
Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 0
Query:  582 SEELECAVCMELMVEPV-AVSCGHLLCACCLRDWRRQCGDGRPPTCPTCQTDVKGS-TPMKQMKNAIGHLIDS--GLLPADDVANYRNRIGDTASAAPAHA 678
            +EE  CA+C+E+MVEPV AV CGH  C  CL D  R+C         TC++ + G   P + + +AI  L++   GL   DDV  YR R   TA+  PA A
Sbjct:  146 TEEFACAICLEIMVEPVTAVPCGHSFCRTCLMDSVRECH--------TCRSALTGRPVPARSLNHAIALLVEHSPGLFATDDVEQYRAR---TAATKPAGA 235          
BLAST of jgi.p|Trimin1|353526 vs. uniprot
Match: UPI001D169CCF (E3 ubiquitin-protein ligase TRIM39-like n=1 Tax=Mauremys mutica TaxID=74926 RepID=UPI001D169CCF)

HSP 1 Score: 62.4 bits (150), Expect = 2.320e-6
Identity = 31/83 (37.35%), Postives = 44/83 (53.01%), Query Frame = 0
Query:  576 AAVGSASEELECAVCMELMVEPVAVSCGHLLCACCLRDWRRQCGDGRPPTCPTCQTDV-KGS-TPMKQMKNAIGHLIDSGLLP 656
            A  G   +E  C++C+E ++EPV ++CGH  C  CL  +  + G G P TCP C+    KG   P  Q+ N +  L   GL P
Sbjct:    5 ATAGEVQDEAICSICLEYLMEPVTIACGHNFCRACLSQYCAEKGAGTPLTCPQCRAQFQKGEFRPNTQLSNIVQKLKQLGLKP 87          
BLAST of jgi.p|Trimin1|353526 vs. uniprot
Match: A0A8C3RZW3_CHESE (RING-type domain-containing protein n=1 Tax=Chelydra serpentina TaxID=8475 RepID=A0A8C3RZW3_CHESE)

HSP 1 Score: 60.1 bits (144), Expect = 3.160e-6
Identity = 30/83 (36.14%), Postives = 43/83 (51.81%), Query Frame = 0
Query:  576 AAVGSASEELECAVCMELMVEPVAVSCGHLLCACCLRDWRRQCGDGRPPTCPTCQTDV-KGS-TPMKQMKNAIGHLIDSGLLP 656
            A  G   +E+ CA+C+E ++EPV ++CGH  C  C+  +    G G P  CP C+    KG   P  Q+ N I  +   GL P
Sbjct:    5 ATAGEIQDEVICAICLEYLMEPVTIACGHNFCQACITQYCEGKGTGTPLACPQCRAQFQKGEFKPNTQLNNIIQKIKQLGLKP 87          
BLAST of jgi.p|Trimin1|353526 vs. uniprot
Match: UPI001D16863D (E3 ubiquitin-protein ligase TRIM39-like n=1 Tax=Mauremys mutica TaxID=74926 RepID=UPI001D16863D)

HSP 1 Score: 57.4 bits (137), Expect = 8.590e-5
Identity = 27/76 (35.53%), Postives = 41/76 (53.95%), Query Frame = 0
Query:  576 AAVGSASEELECAVCMELMVEPVAVSCGHLLCACCLRDWRRQCGDGRPPTCPTCQTDV-KGS-TPMKQMKNAIGHL 649
            A  G   +E  C++C+E ++EPV ++CGH  C  C+  +  + G G P TCP C+    KG   P  Q+ N +  L
Sbjct:    5 ATAGEVQDEAICSICLEYLMEPVTIACGHNFCRACIAQYCAEKGAGTPLTCPQCRAQFQKGEFRPNTQLSNIVQKL 80          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353526 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835Z6V7_9STRA0.000e+0100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3L8H1_9STRA1.680e-741.58Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
UPI001D169CCF2.320e-637.35E3 ubiquitin-protein ligase TRIM39-like n=1 Tax=Ma... [more]
A0A8C3RZW3_CHESE3.160e-636.14RING-type domain-containing protein n=1 Tax=Chelyd... [more]
UPI001D16863D8.590e-535.53E3 ubiquitin-protein ligase TRIM39-like n=1 Tax=Ma... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 385..412
NoneNo IPR availableCOILSCoilCoilcoord: 424..472
NoneNo IPR availableCOILSCoilCoilcoord: 317..376
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 584..634
e-value: 4.9E-7
score: 29.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..215
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 579..648
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 587..629
e-value: 2.8E-4
score: 30.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 587..630
score: 12.326995
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 547..652
e-value: 2.1E-16
score: 61.6
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 602..611

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_168contigContig_168:152204..156862 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353526mRNA_15724Tribonema minus UTEX_B_3156 mRNAContig_168 152204..156862 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353526|estExt_Genemark1.C_Ctg_1680022 ID=Trimin1|353526|estExt_Genemark1.C_Ctg_1680022|Name=jgi.p|Trimin1|353526|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=829bp
MAIKWHLAPSAGGDKVLLTPDQPWHYQVSGARENTLTFLARSDGTVTVSK
PAAWEPAYTCTLNDRCLDDGVTALADQDSISVNFNFTHDGADDDPCHIVE
QAFTVVLAEGSVPTPAHHQDQSAKRTAAAAALRDTSGRKKRRRANSGDCT
DCDPAAECSSAPQPPQVVPLLLQLPVPSVVSPSSGRQPCPSDDPCKSSGG
GGGGGSGGGSDSGARGAGVTSANAAMLSEISAQAAHCASLQDVAGLVNTA
VSAITRGWQQNERERVAALEAERAATAKAQADAEAAAQRAAGARIAEAQA
AAAAAAAATVAAADVKVAEAERACAAAVAEAQDAKRAAEDKVAAAEARAT
AAENAVAELKSKATEAETKAAAAAAELKRKALAAVGKAKAAVAELKSKAA
AAESKAAAAVAAGEERVATAQNATATAEAEAAEQAERAQAVEDRATAAEA
RVAEAARERDSLISRAQNAEISKGILEATATTAAQRAAADAAELTRLRDD
LTSIRALYTAEQQRADAAETAAAAERCIALRGAAAFSAHTLQLAADAAAA
RSAAPAAAGAAAAGEAAARRLAAAEAAVGSASEELECAVCMELMVEPVAV
SCGHLLCACCLRDWRRQCGDGRPPTCPTCQTDVKGSTPMKQMKNAIGHLI
DSGLLPADDVANYRNRIGDTASAAPAHAAPLAAAAAAAAAAPPAAAAAAA
AAAAAPAAAAPAAAAAAAAAAALPAMAHAPPVAGRGFGPPRVRGETGTVN
RNCSPTRAYGGNAAPQGQFRGKAPDARCRASTALLRSAVERRRAAADAAA
AAAAAAAAAVAAAAARAGFRALLDRPTD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS