mRNA_15724 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|353526
Unique Name	mRNA_15724
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|353526 vs. uniprot
Match: A0A835Z6V7_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6V7_9STRA)

HSP 1 Score: 997 bits (2578), Expect = 0.000e+0
Identity = 828/828 (100.00%), Postives = 828/828 (100.00%), Query Frame = 1

Query:    1 MAIKWHLAPSAGGDKVLLTPDQPWHYQVSGARENTLTFLARSDGTVTVSKPAAWEPAYTCTLNDRCLDDGVTALADQDSISVNFNFTHDGADDDPCHIVEQAFTVVLAEGSVPTPAHHQDQSAKRTAXXXXXRDTSGRXXXXRANSGDCTDCDPAAECSSAPQPPQVVPLLLQLPVPSVVSPSSGRQPCPSDDPCKSSGGXXXXXXXXXSDSGARGAGVTSANAAMLSEISAQAAHCASLQDVAGLVNTAVSAITRGWQQNERERVAALEAERAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAADVKVAEAERACXXXXXXAQDAKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERDSLISRAQNAEISKGILEATATTAAQRAAADAAELTRLRDDLTSIRALYTAEQQRADAAETAAAAERCIALRGAAAFSAHTLQLAADAAAARSXXXXXXXXXXXXXXXXXXXXXXEAAVGSASEELECAVCMELMVEPVAVSCGHLLCACCLRDWRRQCGDGRPPTCPTCQTDVKGSTPMKQMKNAIGHLIDSGLLPADDVANYRNRIGDTASAAPAHAAPLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAMAHAPPVAGRGFGPPRVRGETGTVNRNCSPTRAYGGNAAPQGQFRGKAPDARCRASTALLRSAVERRXXXXXXXXXXXXXXXXXXXXXXARAGFRALLDRPTD 2484
            MAIKWHLAPSAGGDKVLLTPDQPWHYQVSGARENTLTFLARSDGTVTVSKPAAWEPAYTCTLNDRCLDDGVTALADQDSISVNFNFTHDGADDDPCHIVEQAFTVVLAEGSVPTPAHHQDQSAKRTAXXXXXRDTSGRXXXXRANSGDCTDCDPAAECSSAPQPPQVVPLLLQLPVPSVVSPSSGRQPCPSDDPCKSSGGXXXXXXXXXSDSGARGAGVTSANAAMLSEISAQAAHCASLQDVAGLVNTAVSAITRGWQQNERERVAALEAERAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAADVKVAEAERACXXXXXXAQDAKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERDSLISRAQNAEISKGILEATATTAAQRAAADAAELTRLRDDLTSIRALYTAEQQRADAAETAAAAERCIALRGAAAFSAHTLQLAADAAAARSXXXXXXXXXXXXXXXXXXXXXXEAAVGSASEELECAVCMELMVEPVAVSCGHLLCACCLRDWRRQCGDGRPPTCPTCQTDVKGSTPMKQMKNAIGHLIDSGLLPADDVANYRNRIGDTASAAPAHAAPLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAMAHAPPVAGRGFGPPRVRGETGTVNRNCSPTRAYGGNAAPQGQFRGKAPDARCRASTALLRSAVERRXXXXXXXXXXXXXXXXXXXXXXARAGFRALLDRPTD
Sbjct:    1 MAIKWHLAPSAGGDKVLLTPDQPWHYQVSGARENTLTFLARSDGTVTVSKPAAWEPAYTCTLNDRCLDDGVTALADQDSISVNFNFTHDGADDDPCHIVEQAFTVVLAEGSVPTPAHHQDQSAKRTAXXXXXRDTSGRXXXXRANSGDCTDCDPAAECSSAPQPPQVVPLLLQLPVPSVVSPSSGRQPCPSDDPCKSSGGXXXXXXXXXSDSGARGAGVTSANAAMLSEISAQAAHCASLQDVAGLVNTAVSAITRGWQQNERERVAALEAERAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAADVKVAEAERACXXXXXXAQDAKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERDSLISRAQNAEISKGILEATATTAAQRAAADAAELTRLRDDLTSIRALYTAEQQRADAAETAAAAERCIALRGAAAFSAHTLQLAADAAAARSXXXXXXXXXXXXXXXXXXXXXXEAAVGSASEELECAVCMELMVEPVAVSCGHLLCACCLRDWRRQCGDGRPPTCPTCQTDVKGSTPMKQMKNAIGHLIDSGLLPADDVANYRNRIGDTASAAPAHAAPLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAMAHAPPVAGRGFGPPRVRGETGTVNRNCSPTRAYGGNAAPQGQFRGKAPDARCRASTALLRSAVERRXXXXXXXXXXXXXXXXXXXXXXARAGFRALLDRPTD 828

[Close]

BLAST of jgi.p|Trimin1|353526 vs. uniprot
Match: A0A7S3L8H1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8H1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.680e-7
Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 1

Query: 1744 SEELECAVCMELMVEPV-AVSCGHLLCACCLRDWRRQCGDGRPPTCPTCQTDVKGS-TPMKQMKNAIGHLIDS--GLLPADDVANYRNRIGDTASAAPAHA 2034
            +EE  CA+C+E+MVEPV AV CGH  C  CL D  R+C         TC++ + G   P + + +AI  L++   GL   DDV  YR R   TA+  PA A
Sbjct:  146 TEEFACAICLEIMVEPVTAVPCGHSFCRTCLMDSVRECH--------TCRSALTGRPVPARSLNHAIALLVEHSPGLFATDDVEQYRAR---TAATKPAGA 235

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BLAST of jgi.p|Trimin1|353526 vs. uniprot
Match: UPI001D169CCF (E3 ubiquitin-protein ligase TRIM39-like n=1 Tax=Mauremys mutica TaxID=74926 RepID=UPI001D169CCF)

HSP 1 Score: 62.4 bits (150), Expect = 2.320e-6
Identity = 31/83 (37.35%), Postives = 44/83 (53.01%), Query Frame = 1

Query: 1726 AAVGSASEELECAVCMELMVEPVAVSCGHLLCACCLRDWRRQCGDGRPPTCPTCQTDV-KGS-TPMKQMKNAIGHLIDSGLLP 1968
            A  G   +E  C++C+E ++EPV ++CGH  C  CL  +  + G G P TCP C+    KG   P  Q+ N +  L   GL P
Sbjct:    5 ATAGEVQDEAICSICLEYLMEPVTIACGHNFCRACLSQYCAEKGAGTPLTCPQCRAQFQKGEFRPNTQLSNIVQKLKQLGLKP 87

[Close]

BLAST of jgi.p|Trimin1|353526 vs. uniprot
Match: A0A8C3RZW3_CHESE (RING-type domain-containing protein n=1 Tax=Chelydra serpentina TaxID=8475 RepID=A0A8C3RZW3_CHESE)

HSP 1 Score: 60.1 bits (144), Expect = 3.160e-6
Identity = 30/83 (36.14%), Postives = 43/83 (51.81%), Query Frame = 1

Query: 1726 AAVGSASEELECAVCMELMVEPVAVSCGHLLCACCLRDWRRQCGDGRPPTCPTCQTDV-KGS-TPMKQMKNAIGHLIDSGLLP 1968
            A  G   +E+ CA+C+E ++EPV ++CGH  C  C+  +    G G P  CP C+    KG   P  Q+ N I  +   GL P
Sbjct:    5 ATAGEIQDEVICAICLEYLMEPVTIACGHNFCQACITQYCEGKGTGTPLACPQCRAQFQKGEFKPNTQLNNIIQKIKQLGLKP 87

[Close]

BLAST of jgi.p|Trimin1|353526 vs. uniprot
Match: UPI001D16863D (E3 ubiquitin-protein ligase TRIM39-like n=1 Tax=Mauremys mutica TaxID=74926 RepID=UPI001D16863D)

HSP 1 Score: 57.4 bits (137), Expect = 8.590e-5
Identity = 27/76 (35.53%), Postives = 41/76 (53.95%), Query Frame = 1

Query: 1726 AAVGSASEELECAVCMELMVEPVAVSCGHLLCACCLRDWRRQCGDGRPPTCPTCQTDV-KGS-TPMKQMKNAIGHL 1947
            A  G   +E  C++C+E ++EPV ++CGH  C  C+  +  + G G P TCP C+    KG   P  Q+ N +  L
Sbjct:    5 ATAGEVQDEAICSICLEYLMEPVTIACGHNFCRACIAQYCAEKGAGTPLTCPQCRAQFQKGEFRPNTQLSNIVQKL 80

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353526 vs. uniprot

BLAST of jgi.p|Trimin1|353526 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
A0A835Z6V7_9STRA	0.000e+0	100.00	RING-type domain-containing protein n=1 Tax=Tribon...	[more]
A0A7S3L8H1_9STRA	1.680e-7	41.58	Hypothetical protein n=1 Tax=Amphora coffeiformis ...	[more]
UPI001D169CCF	2.320e-6	37.35	E3 ubiquitin-protein ligase TRIM39-like n=1 Tax=Ma...	[more]
A0A8C3RZW3_CHESE	3.160e-6	36.14	RING-type domain-containing protein n=1 Tax=Chelyd...	[more]
UPI001D16863D	8.590e-5	35.53	E3 ubiquitin-protein ligase TRIM39-like n=1 Tax=Ma...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_168	contig	Contig_168:152204..156862 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|353526\|estExt_Genemark1.C_Ctg_1680022
BRITE	br01611,ko00000,ko00001,ko00002,ko01000,ko03019,ko03021,ko03400,ko04030,ko04121,ko04131
KEGG rclass	RC02795
KEGG Reaction	R00435,R00441,R00442,R00443
KEGG Module	M00180
KEGG Pathway	ko00230,ko00240,ko01100,ko03020,ko04080,ko05016,ko05168,ko05169,ko05322,map00230,map00240,map01100,map03020,map04080,map05016,map05168,map05169,map05322
KEGG ko	ko:K03006,ko:K04617,ko:K10651,ko:K12000,ko:K12009,ko:K12012,ko:K12015,ko:K12027,ko:K12034
EC	2.3.2.27,2.7.7.6
Preferred name	RNF39
Description	regulation of erythrocyte enucleation
COG category	O
Max annot lvl	33208\|Metazoa
EggNOG OGs	KOG2177@1\|root,KOG2177@2759\|Eukaryota,38C4M@33154\|Opisthokonta,3BDNZ@33208\|Metazoa,3CWUT@33213\|Bilateria,480HC@7711\|Chordata
Evalue	2.01e-06
Seed ortholog	28377.ENSACAP00000021320
Hectar predicted targeting category	other localisation
TranscriptId	353848
Track	FilteredModels1
ProteinId	353526

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353526	gene_15724	Tribonema minus UTEX_B_3156	gene	Contig_168 152204..156862 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353526	Trimin1\|353526\|estExt_Genemark1.C_Ctg_1680022	Tribonema minus UTEX_B_3156	polypeptide	Contig_168 152204..156862 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15724_1	exon_15724_1	Tribonema minus UTEX_B_3156	exon	Contig_168 152204..152284 +
exon_15724_2	exon_15724_2	Tribonema minus UTEX_B_3156	exon	Contig_168 153026..153767 +
exon_15724_3	exon_15724_3	Tribonema minus UTEX_B_3156	exon	Contig_168 154140..154736 +
exon_15724_4	exon_15724_4	Tribonema minus UTEX_B_3156	exon	Contig_168 155089..155545 +
exon_15724_5	exon_15724_5	Tribonema minus UTEX_B_3156	exon	Contig_168 156201..156639 +
exon_15724_6	exon_15724_6	Tribonema minus UTEX_B_3156	exon	Contig_168 156692..156862 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15724	CDS_15724	Tribonema minus UTEX_B_3156	CDS	Contig_168 152204..152284 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_168:152204..156862+
coding sequence from alignment at Contig_168:152204..156862+

spliced messenger RNA

>mRNA_15724 ID=mRNA_15724|Name=jgi.p|Trimin1|353526|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2487bp|location=Sequence derived from alignment at Contig_168:152204..156862+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAATCAAGTGGCATCTGGCGCCGAGTGCCGGCGGCGACAAAGTCCT
CTTGACCCCGGATCAGCCCTGGCACTACCAGGTGTCAGGCGCACGCGAAA
ACACGCTGACCTTTCTGGCGCGCAGCGACGGCACAGTCACCGTCTCGAAG
CCCGCCGCGTGGGAGCCGGCGTACACGTGCACGCTCAACGACCGATGCCT
CGACGATGGCGTAACCGCTCTTGCCGACCAGGACTCCATCTCCGTGAACT
TCAACTTCACGCACGACGGTGCCGATGATGACCCGTGTCACATCGTGGAG
CAAGCATTCACCGTCGTCCTGGCGGAGGGGTCGGTCCCAACACCTGCGCA
CCACCAGGACCAGAGCGCCAAGCGCACCGCAGCAGCGGCCGCGCTGCGCG
ACACCAGCGGCAGGAAGAAGCGCCGCCGCGCCAACTCCGGTGACTGCACC
GACTGTGACCCGGCCGCCGAATGCAGCAGCGCTCCGCAGCCGCCGCAGGT
CGTGCCCCTGCTGCTGCAGCTGCCGGTGCCATCTGTCGTGTCACCGTCAT
CAGGCCGCCAGCCGTGTCCATCGGACGACCCATGCAAGAGCAGCGGCGGC
GGCGGCGGCGGCGGCAGTGGCGGCGGCAGCGACAGCGGCGCCCGCGGGGC
CGGGGTCACCAGCGCGAATGCTGCAATGCTCAGCGAGATAAGCGCGCAGG
CGGCGCACTGTGCCTCTCTGCAGGACGTGGCGGGCCTGGTCAACACGGCA
GTGTCCGCAATCACCAGAGGCTGGCAGCAGAACGAGCGGGAACGGGTGGC
AGCGCTGGAGGCGGAGAGGGCAGCAACGGCCAAGGCCCAGGCGGACGCGG
AGGCAGCCGCGCAGCGCGCAGCGGGTGCGCGCATCGCTGAGGCGCAGGCG
GCGGCGGCGGCGGCGGCAGCGGCAACGGTGGCGGCGGCGGACGTCAAAGT
GGCGGAGGCGGAGCGTGCCTGTGCCGCCGCAGTTGCCGAGGCGCAAGATG
CCAAGCGGGCGGCGGAGGATAAGGTGGCAGCAGCGGAGGCGAGGGCGACG
GCGGCGGAGAACGCAGTGGCGGAGCTGAAGAGCAAGGCGACAGAGGCGGA
AACCAAGGCGGCAGCGGCAGCGGCGGAGCTGAAGCGCAAGGCGTTGGCGG
CAGTAGGCAAGGCGAAAGCGGCAGTGGCGGAGCTGAAGAGCAAGGCAGCG
GCGGCAGAAAGCAAGGCGGCGGCGGCAGTGGCAGCAGGAGAGGAGAGGGT
AGCGACGGCGCAGAACGCGACGGCTACGGCAGAAGCGGAGGCGGCAGAGC
AGGCGGAGAGAGCGCAGGCAGTGGAGGACAGGGCTACGGCCGCAGAAGCG
AGGGTGGCAGAGGCAGCAAGGGAGCGGGACTCTTTGATATCTCGTGCTCA
GAACGCGGAGATCAGCAAAGGAATCCTCGAAGCCACGGCGACGACAGCCG
CGCAGCGCGCCGCGGCGGACGCAGCGGAGCTGACGCGACTCCGGGACGAC
CTCACCAGCATCAGAGCGCTGTACACCGCTGAGCAGCAGCGTGCCGACGC
AGCCGAGACGGCGGCGGCGGCGGAGAGGTGCATTGCGCTGCGCGGCGCCG
CCGCGTTCAGCGCGCACACGCTGCAGCTGGCGGCGGACGCGGCGGCGGCG
CGCAGCGCCGCACCCGCGGCGGCGGGCGCAGCGGCAGCAGGCGAGGCCGC
TGCGCGGAGGCTGGCGGCAGCGGAGGCGGCGGTCGGCAGCGCCTCGGAGG
AGTTGGAGTGCGCCGTGTGCATGGAGCTGATGGTGGAGCCGGTGGCGGTG
AGCTGCGGGCACCTGCTGTGCGCGTGCTGCCTGCGGGACTGGCGGCGCCA
GTGCGGCGACGGCCGCCCGCCGACGTGCCCCACTTGTCAGACGGATGTGA
AGGGGTCGACCCCCATGAAACAGATGAAGAACGCGATCGGCCACCTCATC
GACTCCGGCCTCCTGCCAGCCGATGACGTGGCCAACTACAGGAACCGCAT
TGGAGACACCGCGTCGGCAGCGCCTGCGCACGCCGCACCGCTGGCCGCTG
CCGCCGCAGCAGCTGCTGCTGCGCCACCCGCTGCTGCCGCCGCCGCCGCA
GCAGCAGCGGCTGCGCCAGCTGCGGCTGCGCCAGCGGCGGCGGCGGCAGC
GGCGGCGGCGGCGGCGCTGCCAGCAATGGCCCACGCGCCGCCAGTGGCAG
GCCGGGGCTTTGGGCCGCCGCGCGTGCGGGGCGAAACTGGCACCGTGAAC
AGGAACTGTTCTCCCACCCGCGCGTATGGCGGCAACGCTGCGCCTCAGGG
GCAGTTTCGCGGCAAGGCGCCTGATGCGCGTTGCAGAGCCTCGACGGCGC
TGCTGCGCAGCGCCGTCGAGCGCCGCCGCGCCGCCGCCGACGCCGCCGCT
GCTGCCGCCGCTGCTGCTGCTGCTGCTGTGGCGGCGGCGGCAGCTCGTGC
AGGGTTCCGCGCGCTGTTGGATCGCCCAACGGATTAG

protein sequence of jgi.p|Trimin1|353526

>Trimin1|353526|estExt_Genemark1.C_Ctg_1680022 ID=Trimin1|353526|estExt_Genemark1.C_Ctg_1680022|Name=jgi.p|Trimin1|353526|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=829bp
MAIKWHLAPSAGGDKVLLTPDQPWHYQVSGARENTLTFLARSDGTVTVSK
PAAWEPAYTCTLNDRCLDDGVTALADQDSISVNFNFTHDGADDDPCHIVE
QAFTVVLAEGSVPTPAHHQDQSAKRTAAAAALRDTSGRKKRRRANSGDCT
DCDPAAECSSAPQPPQVVPLLLQLPVPSVVSPSSGRQPCPSDDPCKSSGG
GGGGGSGGGSDSGARGAGVTSANAAMLSEISAQAAHCASLQDVAGLVNTA
VSAITRGWQQNERERVAALEAERAATAKAQADAEAAAQRAAGARIAEAQA
AAAAAAAATVAAADVKVAEAERACAAAVAEAQDAKRAAEDKVAAAEARAT
AAENAVAELKSKATEAETKAAAAAAELKRKALAAVGKAKAAVAELKSKAA
AAESKAAAAVAAGEERVATAQNATATAEAEAAEQAERAQAVEDRATAAEA
RVAEAARERDSLISRAQNAEISKGILEATATTAAQRAAADAAELTRLRDD
LTSIRALYTAEQQRADAAETAAAAERCIALRGAAAFSAHTLQLAADAAAA
RSAAPAAAGAAAAGEAAARRLAAAEAAVGSASEELECAVCMELMVEPVAV
SCGHLLCACCLRDWRRQCGDGRPPTCPTCQTDVKGSTPMKQMKNAIGHLI
DSGLLPADDVANYRNRIGDTASAAPAHAAPLAAAAAAAAAAPPAAAAAAA
AAAAAPAAAAPAAAAAAAAAAALPAMAHAPPVAGRGFGPPRVRGETGTVN
RNCSPTRAYGGNAAPQGQFRGKAPDARCRASTALLRSAVERRRAAADAAA
AAAAAAAAAVAAAAARAGFRALLDRPTD*

mRNA from alignment at Contig_168:152204..156862+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15724 ID=mRNA_15724|Name=jgi.p|Trimin1|353526|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4659bp|location=Sequence derived from alignment at Contig_168:152204..156862+ (Tribonema minus UTEX_B_3156 )
ATGGCAATCAAGTGGCATCTGGCGCCGAGTGCCGGCGGCGACAAAGTCCT
CTTGACCCCGGATCAGCCCTGGCACTACCAGGTGCGTGTGTGCTGATGGC
CGTGATCTTCAGCTAGCTCGTTGGCTCTCTGTTCGATGCTTTCTCGTTCG
TCACAATTGCACAGTTCAAGTTAGTAGGATCCGCACGACTTTGGCGCGGG
TGCTGATGGTCAACGATGGTTGCATCAAGTCGCAGTGCCCTGCTGATAGA
TGCCAAATTGAGGATTGCTGGTGATTTCCGATCCTGATGATCTGTCATCG
CTCGCCATTAAAGCAAACTTCTGTAGCCGAAGCTTCGTGCAAGTTTCGTG
CATCGGCCGCGCTTTGGCGTCGTTTAAACCAAAGCTTGCGTGCACGCGCA
GTCGTGTGGCGCTGTTATGTGCCGAACATTACCAACGGCGGCTGCGAGCG
TCGTCGTCGTCCCCGCCACATTGCTGCTGCAGGTCGTTCGTGCCTACTTG
GCGACATCAGCGAAACCAGGCACACCCCTCAACCATGTGCTGCAGGCACT
GTTTATCATCATGTGTGACTTGCACACAGGCGCCACATGCTGCTACGTGT
GCCGCAGGAGACAGTGTTAGACAGGACAGCGCGAATCCAACCTCAAGTTT
CGCTCACGTTGTGTGGTTCCACTTTGGTTCTTGTGTGCTGTCGCGACTGG
CGCATCGGATGTGCTGCAGAGTTTGGCAGCCTTTTGACGAGACCGCACGC
CTGCCCCCAACACCTTCACCACGGCACATCTCATCCCGAACTTCAATCGC
CATGGTGCCTTGTACGCGACAGGTGTCAGGCGCACGCGAAAACACGCTGA
CCTTTCTGGCGCGCAGCGACGGCACAGTCACCGTCTCGAAGCCCGCCGCG
TGGGAGCCGGCGTACACGTGCACGCTCAACGACCGATGCCTCGACGATGG
CGTAACCGCTCTTGCCGACCAGGACTCCATCTCCGTGAACTTCAACTTCA
CGCACGACGGTGCCGATGATGACCCGTGTCACATCGTGGAGCAAGCATTC
ACCGTCGTCCTGGCGGAGGGGTCGGTCCCAACACCTGCGCACCACCAGGA
CCAGAGCGCCAAGCGCACCGCAGCAGCGGCCGCGCTGCGCGACACCAGCG
GCAGGAAGAAGCGCCGCCGCGCCAACTCCGGTGACTGCACCGACTGTGAC
CCGGCCGCCGAATGCAGCAGCGCTCCGCAGCCGCCGCAGGTCGTGCCCCT
GCTGCTGCAGCTGCCGGTGCCATCTGTCGTGTCACCGTCATCAGGCCGCC
AGCCGTGTCCATCGGACGACCCATGCAAGAGCAGCGGCGGCGGCGGCGGC
GGCGGCAGTGGCGGCGGCAGCGACAGCGGCGCCCGCGGGGCCGGGGTCAC
CAGCGCGAATGCTGCAATGCTCAGCGAGATAAGCGCGCAGGCGGCGCACT
GTGCCTCTCTGCAGGACGTGGCGGGCCTGGTCAACACGGCAGTGTCCGCA
ATCACCAGAGGCTGGCAGCAGAACGAGCGGGAACGGGTGGCAGCGCTGGA
GGCGGAGAGGGCAGGTACGTGCGCACTGGTGTAACTGCCGTGTTGTAACT
GCCATGTTGTAGCTGTCGATTGCACACAGCGCTTGGGCACGGGCCGTGGG
AGGTGGCGTACCAACGAATGTTGCACGCACTTCTTAAAAGCATCGGCGTT
GCAATTTGCAGGAACCCTAGCTAAGCACCGCCAAGCTTTCTAGGTTACTT
TCTTTTTTTGCTGAGCGGCCGAATGCAATGCCGGTCATCGCACTTGGCGC
AAGTCAAGGTGGCACCTACCCACACACACCTCAACTTGAACATCAACAGC
CGCAGCTCCAGCAGTACACCCTCATGAGATGCTCTACAGGCTCGACGTCT
CATGTCAACGGATCGCCGCTTTGTGTCCTTGCACAGCAACGGCCAAGGCC
CAGGCGGACGCGGAGGCAGCCGCGCAGCGCGCAGCGGGTGCGCGCATCGC
TGAGGCGCAGGCGGCGGCGGCGGCGGCGGCAGCGGCAACGGTGGCGGCGG
CGGACGTCAAAGTGGCGGAGGCGGAGCGTGCCTGTGCCGCCGCAGTTGCC
GAGGCGCAAGATGCCAAGCGGGCGGCGGAGGATAAGGTGGCAGCAGCGGA
GGCGAGGGCGACGGCGGCGGAGAACGCAGTGGCGGAGCTGAAGAGCAAGG
CGACAGAGGCGGAAACCAAGGCGGCAGCGGCAGCGGCGGAGCTGAAGCGC
AAGGCGTTGGCGGCAGTAGGCAAGGCGAAAGCGGCAGTGGCGGAGCTGAA
GAGCAAGGCAGCGGCGGCAGAAAGCAAGGCGGCGGCGGCAGTGGCAGCAG
GAGAGGAGAGGGTAGCGACGGCGCAGAACGCGACGGCTACGGCAGAAGCG
GAGGCGGCAGAGCAGGCGGAGAGAGCGCAGGCAGTGGAGGACAGGGCTAC
GGCCGCAGAAGCGAGGGTGGCAGAGGCAGCAAGGGAGCGGGACTCTTTGA
TATCTCGTGCTCAGAACGCGGAGATCAGCAAAGGTACGCCGCATGAACGG
CGGCGCTGGATGATTGATCGGCGCACTCGTATAGTGCTTCTGGCGTCGGT
TTCAGTTGCCTTCTTGCGATGGTCGCTGCACGCAGCGCTCCGGTCTGCAG
GCCCACTCGCGTCGTCCGCTGGAATACACAACGTACCGCCATTTAAGTGC
ATCCCACGTGGATGAATCCATGCGCTACTGTACTTGTTGGACAGCATGGC
ACAATGCGTATTTTTGTGTGGTAGCAGCTCTGTGCAGAATCTATGCAGAG
CCCCCGCAAGCAAACACCCGCGCATCCGCAGCGACACGGTCCGACGCGCC
GCCGCCGCCCCCCCCCCCCCCCCCCCCCCGCGCAGGAATCCTCGAAGCCA
CGGCGACGACAGCCGCGCAGCGCGCCGCGGCGGACGCAGCGGAGCTGACG
CGACTCCGGGACGACCTCACCAGCATCAGAGCGCTGTACACCGCTGAGCA
GCAGCGTGCCGACGCAGCCGAGACGGCGGCGGCGGCGGAGAGGTGCATTG
CGCTGCGCGGCGCCGCCGCGTTCAGCGCGCACACGCTGCAGCTGGCGGCG
GACGCGGCGGCGGCGCGCAGCGCCGCACCCGCGGCGGCGGGCGCAGCGGC
AGCAGGCGAGGCCGCTGCGCGGAGGCTGGCGGCAGCGGAGGCGGCGGTCG
GCAGCGCCTCGGAGGAGTTGGAGTGCGCCGTGTGCATGGAGCTGATGGTG
GAGCCGGTGGCGGTGAGCTGCGGGCACCTGCTGTGCGCGTGCTGCCTGCG
GGACTGGCGGCGCCAGTGCGGCGACGGCCGCCCGCCGACGTGGTGAGTGG
CGCGCATGCATACCCTCACGTACGCCAGATTCACTTGAAGTAGCACTTGA
AATCCACTTTGGAGTATCACACAGAGCGCACTTGAAGTAGCAGTTGAAGT
ACATGATTCTGTGGTAGCACTTGAAGTAGCACTTGAAGTCATGGCGTGCT
GAGTGGCGTGCGCGCGCGCCACACGTGTCCCCACAAATGTGCGTTGCTTG
ACAGATAGCATTTGAAGCAGCACTTGAAGTAGCACTCGGCGTACATGGCG
CGGCAGTGCTGCATGTGCGTTTGTGTTTCTGTAGGCCGTTCCGTGTCGCT
TGCGCAGTTGAAAGATGATGAGCTTTAGTTGACCATCCACCGGCTGTTGC
GATTGCCACCACCAGTGCAGCCTAGAGGGTCCGCAGGGAAGCTCTGGCCT
TGGTGTAGGTTGTGAGGTGAACGGACCATTTGCGCTGTGCCCTGCGGCAT
CTCGGTCGTTGAAGGTGAACAATTAACTCACTGCGTGCCTGAGAACTGTA
CCCAATTTCTGCCATATGTCAGAAGCGCGGCACACGATGCGGCATCTGCT
CCAAATCACCAGCATCTACGCTGAAGCTTTCCATGTTTTGCTCTGCGCTT
TCCTCTCGCGCTCAAAGCCCCCCCCCCCACGCCCCGCCCCCTTCCAGCCC
CACTTGTCAGACGGATGTGAAGGGGTCGACCCCCATGAAACAGATGAAGA
ACGCGATCGGCCACCTCATCGACTCCGGCCTCCTGCCAGCCGATGACGTG
GCCAACTACAGGAACCGCATTGGAGACACCGCGTCGGCAGCGCCTGCGCA
CGCCGCACCGCTGGCCGCTGCCGCCGCAGCAGCTGCTGCTGCGCCACCCG
CTGCTGCCGCCGCCGCCGCAGCAGCAGCGGCTGCGCCAGCTGCGGCTGCG
CCAGCGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGCTGCCAGCAATGGC
CCACGCGCCGCCAGTGGCAGGCCGGGGCTTTGGGCCGCCGCGCGTGCGGG
GCGAAACTGGCACCGTGAACAGGAACTGTTCTCCCACCCGCGCGTATGGC
GGCAACGCTGCGCCTCAGGGGCAGTTTCGCGGCAAGGTGTTGAGGAACCA
TCAAGTGCCCGGCGGGGGCGGCGGCGGCGGCGGCGCAGGCGCCTGATGCG
CGTTGCAGAGCCTCGACGGCGCTGCTGCGCAGCGCCGTCGAGCGCCGCCG
CGCCGCCGCCGACGCCGCCGCTGCTGCCGCCGCTGCTGCTGCTGCTGCTG
TGGCGGCGGCGGCAGCTCGTGCAGGGTTCCGCGCGCTGTTGGATCGCCCA
ACGGATTAG

Coding sequence (CDS) from alignment at Contig_168:152204..156862+

>mRNA_15724 ID=mRNA_15724|Name=jgi.p|Trimin1|353526|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2487bp|location=Sequence derived from alignment at Contig_168:152204..156862+ (Tribonema minus UTEX_B_3156 )
ATGGCAATCAAGTGGCATCTGGCGCCGAGTGCCGGCGGCGACAAAGTCCT
CTTGACCCCGGATCAGCCCTGGCACTACCAGGTGTCAGGCGCACGCGAAA
ACACGCTGACCTTTCTGGCGCGCAGCGACGGCACAGTCACCGTCTCGAAG
CCCGCCGCGTGGGAGCCGGCGTACACGTGCACGCTCAACGACCGATGCCT
CGACGATGGCGTAACCGCTCTTGCCGACCAGGACTCCATCTCCGTGAACT
TCAACTTCACGCACGACGGTGCCGATGATGACCCGTGTCACATCGTGGAG
CAAGCATTCACCGTCGTCCTGGCGGAGGGGTCGGTCCCAACACCTGCGCA
CCACCAGGACCAGAGCGCCAAGCGCACCGCAGCAGCGGCCGCGCTGCGCG
ACACCAGCGGCAGGAAGAAGCGCCGCCGCGCCAACTCCGGTGACTGCACC
GACTGTGACCCGGCCGCCGAATGCAGCAGCGCTCCGCAGCCGCCGCAGGT
CGTGCCCCTGCTGCTGCAGCTGCCGGTGCCATCTGTCGTGTCACCGTCAT
CAGGCCGCCAGCCGTGTCCATCGGACGACCCATGCAAGAGCAGCGGCGGC
GGCGGCGGCGGCGGCAGTGGCGGCGGCAGCGACAGCGGCGCCCGCGGGGC
CGGGGTCACCAGCGCGAATGCTGCAATGCTCAGCGAGATAAGCGCGCAGG
CGGCGCACTGTGCCTCTCTGCAGGACGTGGCGGGCCTGGTCAACACGGCA
GTGTCCGCAATCACCAGAGGCTGGCAGCAGAACGAGCGGGAACGGGTGGC
AGCGCTGGAGGCGGAGAGGGCAGCAACGGCCAAGGCCCAGGCGGACGCGG
AGGCAGCCGCGCAGCGCGCAGCGGGTGCGCGCATCGCTGAGGCGCAGGCG
GCGGCGGCGGCGGCGGCAGCGGCAACGGTGGCGGCGGCGGACGTCAAAGT
GGCGGAGGCGGAGCGTGCCTGTGCCGCCGCAGTTGCCGAGGCGCAAGATG
CCAAGCGGGCGGCGGAGGATAAGGTGGCAGCAGCGGAGGCGAGGGCGACG
GCGGCGGAGAACGCAGTGGCGGAGCTGAAGAGCAAGGCGACAGAGGCGGA
AACCAAGGCGGCAGCGGCAGCGGCGGAGCTGAAGCGCAAGGCGTTGGCGG
CAGTAGGCAAGGCGAAAGCGGCAGTGGCGGAGCTGAAGAGCAAGGCAGCG
GCGGCAGAAAGCAAGGCGGCGGCGGCAGTGGCAGCAGGAGAGGAGAGGGT
AGCGACGGCGCAGAACGCGACGGCTACGGCAGAAGCGGAGGCGGCAGAGC
AGGCGGAGAGAGCGCAGGCAGTGGAGGACAGGGCTACGGCCGCAGAAGCG
AGGGTGGCAGAGGCAGCAAGGGAGCGGGACTCTTTGATATCTCGTGCTCA
GAACGCGGAGATCAGCAAAGGAATCCTCGAAGCCACGGCGACGACAGCCG
CGCAGCGCGCCGCGGCGGACGCAGCGGAGCTGACGCGACTCCGGGACGAC
CTCACCAGCATCAGAGCGCTGTACACCGCTGAGCAGCAGCGTGCCGACGC
AGCCGAGACGGCGGCGGCGGCGGAGAGGTGCATTGCGCTGCGCGGCGCCG
CCGCGTTCAGCGCGCACACGCTGCAGCTGGCGGCGGACGCGGCGGCGGCG
CGCAGCGCCGCACCCGCGGCGGCGGGCGCAGCGGCAGCAGGCGAGGCCGC
TGCGCGGAGGCTGGCGGCAGCGGAGGCGGCGGTCGGCAGCGCCTCGGAGG
AGTTGGAGTGCGCCGTGTGCATGGAGCTGATGGTGGAGCCGGTGGCGGTG
AGCTGCGGGCACCTGCTGTGCGCGTGCTGCCTGCGGGACTGGCGGCGCCA
GTGCGGCGACGGCCGCCCGCCGACGTGCCCCACTTGTCAGACGGATGTGA
AGGGGTCGACCCCCATGAAACAGATGAAGAACGCGATCGGCCACCTCATC
GACTCCGGCCTCCTGCCAGCCGATGACGTGGCCAACTACAGGAACCGCAT
TGGAGACACCGCGTCGGCAGCGCCTGCGCACGCCGCACCGCTGGCCGCTG
CCGCCGCAGCAGCTGCTGCTGCGCCACCCGCTGCTGCCGCCGCCGCCGCA
GCAGCAGCGGCTGCGCCAGCTGCGGCTGCGCCAGCGGCGGCGGCGGCAGC
GGCGGCGGCGGCGGCGCTGCCAGCAATGGCCCACGCGCCGCCAGTGGCAG
GCCGGGGCTTTGGGCCGCCGCGCGTGCGGGGCGAAACTGGCACCGTGAAC
AGGAACTGTTCTCCCACCCGCGCGTATGGCGGCAACGCTGCGCCTCAGGG
GCAGTTTCGCGGCAAGGCGCCTGATGCGCGTTGCAGAGCCTCGACGGCGC
TGCTGCGCAGCGCCGTCGAGCGCCGCCGCGCCGCCGCCGACGCCGCCGCT
GCTGCCGCCGCTGCTGCTGCTGCTGCTGTGGCGGCGGCGGCAGCTCGTGC
AGGGTTCCGCGCGCTGTTGGATCGCCCAACGGATTAG