mRNA_15738 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|178328
Unique NamemRNA_15738
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|178328 vs. uniprot
Match: A0A836CLV0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV0_9STRA)

HSP 1 Score: 517 bits (1332), Expect = 9.990e-186
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 1
Query:    1 MRARSAVITGIARNNAQHLGATLALVDAIGALFASYAVVLYENDSTDETPAMIEAWRAANRGGAARIDFISEQLNTVFPMDLGGFAEERFRLLADCRNKCLDVLRGPEYDAFSHVIVLDMDLYDFDLDGLAHSFGAHDAWDAVSANGYFMLGDNEYYYDTLAFRTAEFPDTWHSDAQRDAAHRSYDEAMPLVPVNSAFGGLAVYKRRCLVQCRYSGLDCEHVALHHCLQQTAGCRRLFMNPAMKLNYHLWD 753
            MRARSAVITGIARNNAQHLGATLALVDAIGALFASYAVVLYENDSTDETPAMIEAWRAANRGGAARIDFISEQLNTVFPMDLGGFAEERFRLLADCRNKCLDVLRGPEYDAFSHVIVLDMDLYDFDLDGLAHSFGAHDAWDAVSANGYFMLGDNEYYYDTLAFRTAEFPDTWHSDAQRDAAHRSYDEAMPLVPVNSAFGGLAVYKRRCLVQCRYSGLDCEHVALHHCLQQTAGCRRLFMNPAMKLNYHLWD
Sbjct:    1 MRARSAVITGIARNNAQHLGATLALVDAIGALFASYAVVLYENDSTDETPAMIEAWRAANRGGAARIDFISEQLNTVFPMDLGGFAEERFRLLADCRNKCLDVLRGPEYDAFSHVIVLDMDLYDFDLDGLAHSFGAHDAWDAVSANGYFMLGDNEYYYDTLAFRTAEFPDTWHSDAQRDAAHRSYDEAMPLVPVNSAFGGLAVYKRRCLVQCRYSGLDCEHVALHHCLQQTAGCRRLFMNPAMKLNYHLWD 251          
BLAST of jgi.p|Trimin1|178328 vs. uniprot
Match: A0A7L9RRQ6_9PROT (Mannosyltransferase 1 family protein n=1 Tax=Candidatus Paracaedibacteraceae bacterium 'Lake Konstanz' TaxID=2741701 RepID=A0A7L9RRQ6_9PROT)

HSP 1 Score: 145 bits (365), Expect = 2.120e-38
Identity = 91/251 (36.25%), Postives = 129/251 (51.39%), Query Frame = 1
Query:   19 VITGIARNNAQHLGATLALVDAIGALFASYAVVLYENDSTDETPAMIEAWRAANRGGAARIDFISEQLNTVFPMDLGGFAEERFRLLADCRNKCLDVLRGPEYDAFSHVIVLDMDL-YDFDLDGLAHSFGAHDAWDAVSANGYFMLGDNEYYYDTLAFRTAEFP-------DTWHSDAQRDAAHRSYDEAMPLVPVNSAFGGLAVYKRRCLVQCRYSGL--DCEHVALHHCLQQTAGCRRLFMNPAMKLNY 741
            +I GI+R+NA         ++ +G     Y VV+ ENDS D T  +++ W   N               T+   D         + LAD RN  +D +  PEYD F+ +IV+DMD+ Y FD+ G+ HSF   ++WDA+++NG  +       YD  AFR +EFP       DT+ SD       R Y    P V V+SAFGGL VYKR  L  CRY+ +  DCEH+  H CL++  G  +++MNP   + Y
Sbjct:   66 IICGISRDNATDFWTMRRHIEHLGNQCNDYKVVIVENDSKDGTKDLLKHWADHNTHV------------TIISKDFHNKKRPSIQFLADVRNLYIDEINQPEYDDFNVLIVIDMDMSYGFDIRGIYHSFATWESWDAIASNG--ISNQKGEMYDAFAFRNSEFPFAHYDKPDTYWSDIIPQI-QRVYPVNSPFVAVDSAFGGLTVYKRNTLKGCRYNSIKGDCEHIEFHKCLRKNGG--KMYMNPNQLIRY 299          
BLAST of jgi.p|Trimin1|178328 vs. uniprot
Match: Q4UMY3_RICFE (Uncharacterized protein n=7 Tax=spotted fever group TaxID=114277 RepID=Q4UMY3_RICFE)

HSP 1 Score: 144 bits (362), Expect = 6.040e-38
Identity = 93/263 (35.36%), Postives = 129/263 (49.05%), Query Frame = 1
Query:    1 MRARSAVITGIARNNAQHLGATLALVDAIGALFASYAVVLYENDSTDETPAMIEAWRAANRGGAARIDFISEQLNTVFPMDLGGFAEER--FRLLADCRNKCLDVLRGPEYDAFSHVIVLDMDL-YDFDLDGLAHSFGAHDAWDAVSANGYFMLGDNEYYYDTLAFRTAEFPDTWHS----------DAQRDAA-HRSYDEAMPLVPVNSAFGGLAVYKRRCLVQCRYSGL--DCEHVALHHCLQQTAGCRRLFMNPAMKLNY 741
            M     V  GI R+NA HL   +  ++ IG  F+ Y ++++ENDSTD T  M+  W+  N     ++  IS+            F ++R   + LAD RNK L++L   E+D F  VI+LDMD+ Y  D+ G+  SF   D WD V +NG F        YD  AFR  EF  T +           D +  A   + Y     L+PVNS F  L +YKR+    C Y  +  DCEHV LH C++     R +FMNP   + Y
Sbjct:   55 MSKHKVVFAGITRSNAPHLPNAMRHIEYIGQFFSDYRIIIFENDSTDSTKLMLNLWQLINH----KVKIISQDF----------FNQKRPSIKFLADIRNKYLEILNTSEFDEFDIVIILDMDIGYGIDIRGILDSFSKIDRWDVVCSNGIF--NSKGQMYDAFAFRNEEFSYTPYEYNLKTGKSYFDTENLALMQKIYPPDSDLLPVNSCFNSLTIYKRKFFENCFYDSIKEDCEHVYLHECMRSKHNAR-IFMNPVQIIRY 300          
BLAST of jgi.p|Trimin1|178328 vs. uniprot
Match: A0A5C9CBY0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A5C9CBY0_9BACT)

HSP 1 Score: 137 bits (344), Expect = 1.570e-35
Identity = 94/250 (37.60%), Postives = 134/250 (53.60%), Query Frame = 1
Query:    1 MRARSAVITGIARNNAQHLGATLALVDAIGALFASYAVVLYENDSTDETPAMIEAWRAANRGGAARIDFISEQLNTVFPMDLGGFAEERFRLLADCRNKCLDVLRGPEYDAFSHVIVLDMDLYD-FDLDGLAHSFGAHDAWDAVSANGYFM--LGDN---EYYYDTLAFRTAEFPDTWHSDA--QRDAAHRSYDEAMPLVPVNSAFGGLAVYKRRCLVQCRYSGLDCEHVALHHCLQQTAGCRRLFMNPA 726
            M   +AVI G+AR+ A+ L  T+A ++ IG  FA Y VV+YENDS D+T +++ AW   N     R+  I E +    P++       R   +A+ RN+CLDV+R  +Y  F + +V+D DL   +  DG+A++FG HD WD V +NG     LG N      YD  AFR  E     H  A   +      +     LVPV S FGGL +Y+   L+  RYSG D EH+ LH  ++   G  R+F+N +
Sbjct:   33 MEQATAVICGLARDVAEILPVTIARIERIGERFADYRVVIYENDSCDDTQSLLLAWAQRN----PRVHIILETIGD--PVNPCARCLHRAARMANYRNRCLDVIRS-DYSDFDYALVVDTDLKGGWSYDGIANTFG-HDGWDFVGSNGIIFKRLGGNLNVPIQYDAWAFRLDE-----HFTALPTKTVNVLQWQRGQSLVPVTSCFGGLGIYRMPALLSARYSGWDSEHIPLHQAMRHN-GFHRMFINKS 268          
BLAST of jgi.p|Trimin1|178328 vs. uniprot
Match: UPI001CD249EF (hypothetical protein n=1 Tax=Lutimonas saemankumensis TaxID=483016 RepID=UPI001CD249EF)

HSP 1 Score: 126 bits (316), Expect = 3.200e-31
Identity = 83/264 (31.44%), Postives = 138/264 (52.27%), Query Frame = 1
Query:    1 MRARSAVITGIARNNAQHLGATLALVDAIGALFASYAVVLYENDSTDETPAMIEAWRAANRGGAARIDFISEQLNTVFPMDLGG----FAEERFRLLADCRNKCLDVLRGPEYDAFSHVIVLDMDLYDFDLDGLAHSFGAHDAWDAVSANGY-FMLGDNEYYYDTLAFRTAEFPDTWHSDAQRDAAHRSYD---EAMPLVPVNSAFGGLAVYKRRCLVQCRYSGLD---------CEHVALHHCLQQTAGCRRLFMNPAMKLNY 741
            M+  S VI  I RN    L   +  ++ + + F    V+++ENDS+D T  ++E W+  + G   R +  +E+  T+   D+ G    ++E R   +   RNK +  L   + + F  VIV+D+D+ DF+++G+AHSFG  D WD V ANGY +       ++DT A       +   ++ + ++  + +    + +PL+PV SA+GGL +Y    L +  Y  L+         CEHV+LH  L + AG  R+F+NP M + Y
Sbjct:   15 MKESSVVICSIVRNCESQLSRNIPKIETLRSKFKRSEVIVFENDSSDRTKELLEEWKETSMGVNVRCEDYNEK--TIPKKDINGVNKFYSEYRISKMVRFRNKYMSFLADHQ-EEFDFVIVIDLDIQDFEINGIAHSFGLSDIWDVVCANGYSYSKFLKRRFHDTYALVEYGKENLAQNEREINSNRKKWSFLKKGIPLIPVYSAYGGLTIYNYDILKKKEYYILENDDPSVEVKCEHVSLHTSLHE-AGANRIFINPNMIVLY 274          
BLAST of jgi.p|Trimin1|178328 vs. uniprot
Match: UPI00141F31A0 (glycosyltransferase family 2 protein n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI00141F31A0)

HSP 1 Score: 125 bits (315), Expect = 2.960e-29
Identity = 90/255 (35.29%), Postives = 131/255 (51.37%), Query Frame = 1
Query:    1 MRARSAVITGIARNNAQHLGATLALVDAIGALFASYAVVLYENDSTDETPAMIEAWRAANRGGAARIDFISEQLNTVFPMDLGGFAEERFRLLADCRNKCLDVLRGPEYDAFSHVIVLDMDLYD-FDLDGLAHSFGAHDAWDAVSANGYFMLGDNE------YYYDTLAFRTAEFPDTWHSD-AQRDAAHRSYDEAMPLVPVNSAFGGLAVYKRRCLVQCRYSGLDCEHVALHHCLQQTAGCRRLFMNPAMKLNY 741
            M+  S V+ G+ R+   +L  T A ++ +G +FA Y V+L+ENDS D T   +  WR+ N    AR++F++       P      +  R   LA CRN+    ++   Y  F +VIV+D DL   +  DG+AH+FG  D WD V + G     D         ++DT AFR    P T+ S     +  H S  +  PL+PV S FGG+ +Y+  C+    Y G DCEHV  H+ L Q AG  R F+NP+  + Y
Sbjct:  454 MKQHSVVVCGLCRDVRLYLPRTAARIERLGEMFADYRVMLFENDSKDATLEFLFDWRSRN----ARVEFLTATAGR--PKFQRSRSLARAEWLAHCRNQYRKEIQQ-RYAEFDYVIVVDTDLAGGWSYDGVAHTFGEDD-WDCVGSYGLERRLDQTSDRPPYIHFDTWAFRPT--PGTFASQLTNHNELHLS--KGGPLLPVQSCFGGMGIYRTACMFAAEYGGSDCEHVVFHNRLHQ-AGLTRQFLNPSQLVLY 695          
BLAST of jgi.p|Trimin1|178328 vs. uniprot
Match: UPI00143D23C6 (glycosyltransferase family 2 protein n=1 Tax=Limnoglobus roseus TaxID=2598579 RepID=UPI00143D23C6)

HSP 1 Score: 123 bits (309), Expect = 5.450e-29
Identity = 94/264 (35.61%), Postives = 132/264 (50.00%), Query Frame = 1
Query:    1 MRARSAVITGIARNNAQHLGATLALVDAIGALFASYAVVLYENDSTDETPAMIEAWRAANRGGAARIDFISEQLNT-VFPM--DLGGFAEERFRLLADCRNKCLDVLRGPEYDAFSHVIVLDMDLYD-FDLDGLAHSFGAHDAWDAVSANGYFMLGDNEYYYDTLAFRTAEFP----DTWHSDAQRDAAHRSYDEAM--------PLVPVNSAFGGLAVYKRRCLVQCRY-SGLDCEHVALHHCLQQTAGCRRLFMNPAMKLNY 741
            M   S VI G+ RN    L  T A V+ +G++F  Y  + +ENDS D +P  +  W + N     R++FISE+L    +P   DL      R   LA CRN+  +      Y  + +VIVLD DL   +  +G+AH+FG H++WD V + G  +LG        +  R  EFP    DTW     +  A R              PL+PV S FGGL VY+  CL++C Y S    EH  LH  +++ AG  RLF+NP+  + Y
Sbjct:  226 MAGHSVVICGLCRNVRHFLPRTAARVEKLGSMFRDYRAIFFENDSEDASPEFLRDWASVN----PRVEFISEKLGVRQYPATRDL-----RRAAWLAKCRNRYRERF-AQAYADYDYVIVLDTDLMGGWSYEGIAHTFG-HESWDFVGSYG--LLG-------RVPRRADEFPYVHFDTWAFHPAKGTAARQLTNFADLRLHRGDPLLPVESCFGGLGVYRSACLLECAYASDTGVEHTGLHDRMKR-AGFDRLFLNPSQVVLY 468          
BLAST of jgi.p|Trimin1|178328 vs. uniprot
Match: A0A5C1AHF1_9BACT (Uncharacterized protein n=1 Tax=Limnoglobus roseus TaxID=2598579 RepID=A0A5C1AHF1_9BACT)

HSP 1 Score: 123 bits (309), Expect = 1.880e-28
Identity = 94/264 (35.61%), Postives = 132/264 (50.00%), Query Frame = 1
Query:    1 MRARSAVITGIARNNAQHLGATLALVDAIGALFASYAVVLYENDSTDETPAMIEAWRAANRGGAARIDFISEQLNT-VFPM--DLGGFAEERFRLLADCRNKCLDVLRGPEYDAFSHVIVLDMDLYD-FDLDGLAHSFGAHDAWDAVSANGYFMLGDNEYYYDTLAFRTAEFP----DTWHSDAQRDAAHRSYDEAM--------PLVPVNSAFGGLAVYKRRCLVQCRY-SGLDCEHVALHHCLQQTAGCRRLFMNPAMKLNY 741
            M   S VI G+ RN    L  T A V+ +G++F  Y  + +ENDS D +P  +  W + N     R++FISE+L    +P   DL      R   LA CRN+  +      Y  + +VIVLD DL   +  +G+AH+FG H++WD V + G  +LG        +  R  EFP    DTW     +  A R              PL+PV S FGGL VY+  CL++C Y S    EH  LH  +++ AG  RLF+NP+  + Y
Sbjct:  449 MAGHSVVICGLCRNVRHFLPRTAARVEKLGSMFRDYRAIFFENDSEDASPEFLRDWASVN----PRVEFISEKLGVRQYPATRDL-----RRAAWLAKCRNRYRERF-AQAYADYDYVIVLDTDLMGGWSYEGIAHTFG-HESWDFVGSYG--LLG-------RVPRRADEFPYVHFDTWAFHPAKGTAARQLTNFADLRLHRGDPLLPVESCFGGLGVYRSACLLECAYASDTGVEHTGLHDRMKR-AGFDRLFLNPSQVVLY 691          
BLAST of jgi.p|Trimin1|178328 vs. uniprot
Match: A0A2E5VKY1_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E5VKY1_9PLAN)

HSP 1 Score: 117 bits (293), Expect = 2.620e-27
Identity = 83/246 (33.74%), Postives = 133/246 (54.07%), Query Frame = 1
Query:   19 VITGIARNNAQHLGATLALVDAIGALFASYAVVLYENDSTDETPAMIEAWRAANRGGAARIDFISEQLNTVFPMDLGGFAEERFRLLADCRNKCLDVLRGPEYDAFSHVIVLDMDLYD-FDLDGLAHSFGAHDAWDAVSANGYF----MLGDNEYYYDTLAFRTAEFPDTWHSDAQRDAAHRSYDEAMPLVPVNSAFGGLAVYKRRCLVQCRYSGLDCEHVALHHCLQQTAGCRRLFMNPAMKLNY 741
            VI G+ R++A +L  T+  ++++G LF  Y VV++ENDS DETPA+++ W+  N    +R+  +SE+ N   P++       R   +A  RN+  + +     D F   IV+DMD+ + +  DG+AH+FG  D WD V + G      +L      YD  AFR+    +   +    +    + D    L+ V S FGGL +Y+   L+ C+Y G DCEHV LH  ++++ G  R+F+NP    +Y
Sbjct:  108 VICGLTRDSAPYLQKTITRMESLGNLFGEYRVVVFENDSIDETPALLDRWQRMN----SRVVVLSERRND--PVNQPVRCPLRADRMAFYRNQYREFITHHFVD-FDFAIVVDMDILEGWSNDGVAHTFGFTD-WDFVGSYGIIEKRHLLCSQLQQYDAWAFRSYGSYEALKTRTVNNMRIATEDR---LLAVYSCFGGLGIYRMPALLNCQYVGGDCEHVGLHARMRES-GFDRIFLNPHQTTHY 341          
BLAST of jgi.p|Trimin1|178328 vs. uniprot
Match: A0A6M1ZAX5_9BACT (Uncharacterized protein n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1ZAX5_9BACT)

HSP 1 Score: 107 bits (266), Expect = 7.810e-24
Identity = 77/233 (33.05%), Postives = 118/233 (50.64%), Query Frame = 1
Query:    4 RARSAVITGIARNNAQHLGATLALVDAIGALFASYAVVLYENDSTDETPAMIEAWRAANRGGAARIDFISEQLNTVFPMDLGGFAEERFRLLADCRNKCLDVLRGPEYDAFSHVIVLDMD-LYDFDLDGLAHSFGAHDAWDAVSANGYFMLGDNEYYYDTLAFRTAEFP-------DTWHSDAQRDAAHRSYDEAMPLVPVNSAFGGLAVYKRRCLVQCRYSGLDCEHVALHH 678
            R +  +I G+ RN  Q    T+A ++A+G  FA YAV++YEN+STD T    + W   N      + FISE +  +        +  R   +A  RN+ L V RG EY  F ++I++D+D L  + ++ +  +      WD ++ANG  ++GD   Y D  A R   FP         W  ++  D  +R   E   L+PV SAFGGLA+YK   ++   YSG   E ++L +
Sbjct:   16 REKKVLICGVCRNVEQAAANTIANIEALGNRFADYAVIIYENNSTDGTARCYQEWAQTN----PHVIFISEMVPDI------QLSPSRTERIARARNRVLSVARGEEYSEFDYLIMVDLDFLCPWPIEEILKTIELPLEWDCIAANG--LIGDQ--YSDHYALRDRTFPLGPEMVGSFWWKESWAD--YRL--EGDELLPVYSAFGGLAIYKMSSMLPFSYSGTVTEDLSLFY 230          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178328 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLV0_9STRA9.990e-186100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7L9RRQ6_9PROT2.120e-3836.25Mannosyltransferase 1 family protein n=1 Tax=Candi... [more]
Q4UMY3_RICFE6.040e-3835.36Uncharacterized protein n=7 Tax=spotted fever grou... [more]
A0A5C9CBY0_9BACT1.570e-3537.60Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
UPI001CD249EF3.200e-3131.44hypothetical protein n=1 Tax=Lutimonas saemankumen... [more]
UPI00141F31A02.960e-2935.29glycosyltransferase family 2 protein n=1 Tax=Rubin... [more]
UPI00143D23C65.450e-2935.61glycosyltransferase family 2 protein n=1 Tax=Limno... [more]
A0A5C1AHF1_9BACT1.880e-2835.61Uncharacterized protein n=1 Tax=Limnoglobus roseus... [more]
A0A2E5VKY1_9PLAN2.620e-2733.74Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A6M1ZAX5_9BACT7.810e-2433.05Uncharacterized protein n=1 Tax=Chlamydiae bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_168contigContig_168:250427..251182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|178328|e_gw1.168.50.1
DescriptionGlycosyl transferase family 2
COG categoryS
Max annot lvl28211|Alphaproteobacteria
EggNOG OGs2AZMH@1|root,31RW8@2|Bacteria,1NFE9@1224|Proteobacteria,2USJF@28211|Alphaproteobacteria
Evalue9.9e-39
Seed ortholog315456.RF_0224
Hectar predicted targeting categoryother localisation
TranscriptId178650
TrackFilteredModels1
ProteinId178328
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178328gene_15738Tribonema minus UTEX_B_3156 geneContig_168 250427..251182 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15738_1exon_15738_1Tribonema minus UTEX_B_3156 exonContig_168 250427..251182 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15738CDS_15738Tribonema minus UTEX_B_3156 CDSContig_168 250427..251182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178328Trimin1|178328|e_gw1.168.50.1Tribonema minus UTEX_B_3156 polypeptideContig_168 250427..251182 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15738 ID=mRNA_15738|Name=jgi.p|Trimin1|178328|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=756bp|location=Sequence derived from alignment at Contig_168:250427..251182+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCGCGCAGCGCTGTGATCACGGGCATCGCGCGCAACAACGCTCA
GCACCTGGGCGCGACGCTGGCGCTGGTGGACGCTATAGGCGCGCTCTTCG
CGTCGTACGCCGTCGTCCTGTACGAGAACGACTCCACGGACGAGACGCCC
GCGATGATCGAGGCGTGGCGCGCGGCGAACCGCGGCGGCGCGGCGCGTAT
TGACTTCATCTCGGAGCAGCTCAATACGGTGTTTCCGATGGACCTTGGCG
GTTTCGCCGAGGAGCGGTTTCGGCTGCTGGCGGATTGCCGAAATAAGTGC
CTCGACGTGCTGCGCGGTCCCGAGTACGACGCGTTCTCGCACGTCATCGT
GCTCGACATGGATCTCTACGACTTCGACCTGGACGGCCTCGCGCACAGCT
TTGGCGCGCACGACGCCTGGGACGCCGTGAGCGCGAACGGCTACTTCATG
CTGGGCGACAACGAATATTATTATGACACGCTCGCCTTTCGCACCGCAGA
GTTCCCCGACACGTGGCACTCGGACGCGCAGCGCGACGCCGCGCACCGCT
CGTACGACGAAGCCATGCCGCTCGTGCCCGTGAATTCGGCATTTGGGGGA
CTCGCCGTCTACAAGCGGCGCTGCCTCGTGCAGTGCCGCTACAGCGGGCT
CGACTGCGAGCACGTCGCGCTGCACCACTGCCTGCAGCAGACGGCGGGAT
GCCGGCGCCTCTTCATGAACCCCGCCATGAAGCTGAACTACCACCTCTGG
GACTGA
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protein sequence of jgi.p|Trimin1|178328

>Trimin1|178328|e_gw1.168.50.1 ID=Trimin1|178328|e_gw1.168.50.1|Name=jgi.p|Trimin1|178328|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=252bp
MRARSAVITGIARNNAQHLGATLALVDAIGALFASYAVVLYENDSTDETP
AMIEAWRAANRGGAARIDFISEQLNTVFPMDLGGFAEERFRLLADCRNKC
LDVLRGPEYDAFSHVIVLDMDLYDFDLDGLAHSFGAHDAWDAVSANGYFM
LGDNEYYYDTLAFRTAEFPDTWHSDAQRDAAHRSYDEAMPLVPVNSAFGG
LAVYKRRCLVQCRYSGLDCEHVALHHCLQQTAGCRRLFMNPAMKLNYHLW
D*
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mRNA from alignment at Contig_168:250427..251182+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15738 ID=mRNA_15738|Name=jgi.p|Trimin1|178328|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=756bp|location=Sequence derived from alignment at Contig_168:250427..251182+ (Tribonema minus UTEX_B_3156 )
ATGCGCGCGCGCAGCGCTGTGATCACGGGCATCGCGCGCAACAACGCTCA GCACCTGGGCGCGACGCTGGCGCTGGTGGACGCTATAGGCGCGCTCTTCG CGTCGTACGCCGTCGTCCTGTACGAGAACGACTCCACGGACGAGACGCCC GCGATGATCGAGGCGTGGCGCGCGGCGAACCGCGGCGGCGCGGCGCGTAT TGACTTCATCTCGGAGCAGCTCAATACGGTGTTTCCGATGGACCTTGGCG GTTTCGCCGAGGAGCGGTTTCGGCTGCTGGCGGATTGCCGAAATAAGTGC CTCGACGTGCTGCGCGGTCCCGAGTACGACGCGTTCTCGCACGTCATCGT GCTCGACATGGATCTCTACGACTTCGACCTGGACGGCCTCGCGCACAGCT TTGGCGCGCACGACGCCTGGGACGCCGTGAGCGCGAACGGCTACTTCATG CTGGGCGACAACGAATATTATTATGACACGCTCGCCTTTCGCACCGCAGA GTTCCCCGACACGTGGCACTCGGACGCGCAGCGCGACGCCGCGCACCGCT CGTACGACGAAGCCATGCCGCTCGTGCCCGTGAATTCGGCATTTGGGGGA CTCGCCGTCTACAAGCGGCGCTGCCTCGTGCAGTGCCGCTACAGCGGGCT CGACTGCGAGCACGTCGCGCTGCACCACTGCCTGCAGCAGACGGCGGGAT GCCGGCGCCTCTTCATGAACCCCGCCATGAAGCTGAACTACCACCTCTGG GACTGA
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Coding sequence (CDS) from alignment at Contig_168:250427..251182+

>mRNA_15738 ID=mRNA_15738|Name=jgi.p|Trimin1|178328|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=756bp|location=Sequence derived from alignment at Contig_168:250427..251182+ (Tribonema minus UTEX_B_3156 )
ATGCGCGCGCGCAGCGCTGTGATCACGGGCATCGCGCGCAACAACGCTCA
GCACCTGGGCGCGACGCTGGCGCTGGTGGACGCTATAGGCGCGCTCTTCG
CGTCGTACGCCGTCGTCCTGTACGAGAACGACTCCACGGACGAGACGCCC
GCGATGATCGAGGCGTGGCGCGCGGCGAACCGCGGCGGCGCGGCGCGTAT
TGACTTCATCTCGGAGCAGCTCAATACGGTGTTTCCGATGGACCTTGGCG
GTTTCGCCGAGGAGCGGTTTCGGCTGCTGGCGGATTGCCGAAATAAGTGC
CTCGACGTGCTGCGCGGTCCCGAGTACGACGCGTTCTCGCACGTCATCGT
GCTCGACATGGATCTCTACGACTTCGACCTGGACGGCCTCGCGCACAGCT
TTGGCGCGCACGACGCCTGGGACGCCGTGAGCGCGAACGGCTACTTCATG
CTGGGCGACAACGAATATTATTATGACACGCTCGCCTTTCGCACCGCAGA
GTTCCCCGACACGTGGCACTCGGACGCGCAGCGCGACGCCGCGCACCGCT
CGTACGACGAAGCCATGCCGCTCGTGCCCGTGAATTCGGCATTTGGGGGA
CTCGCCGTCTACAAGCGGCGCTGCCTCGTGCAGTGCCGCTACAGCGGGCT
CGACTGCGAGCACGTCGCGCTGCACCACTGCCTGCAGCAGACGGCGGGAT
GCCGGCGCCTCTTCATGAACCCCGCCATGAAGCTGAACTACCACCTCTGG
GACTGA
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