Trimin1|178256|e_gw1.167.2.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|178256
Unique Name	Trimin1\|178256\|e_gw1.167.2.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	137

Homology

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BLAST of jgi.p|Trimin1|178256 vs. uniprot
Match: A0A835ZB42_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB42_9STRA)

HSP 1 Score: 276 bits (705), Expect = 6.300e-94
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0

Query:    1 MQALELHEMEREGFGWTQRACSTVLLACGKAGRLNAALQLIDEMEKRTFSPNDVDYLKLIEACVRGKNVIRAGDRGGSKQALEFLQRMQDKGPVPDIRHYAAAMKVCVTEGDSAKAVNIFRSMRDQVIVMKTYVCV 136
            MQALELHEMEREGFGWTQRACSTVLLACGKAGRLNAALQLIDEMEKRTFSPNDVDYLKLIEACVRGKNVIRAGDRGGSKQALEFLQRMQDKGPVPDIRHYAAAMKVCVTEGDSAKAVNIFRSMRDQVIVMKTYVCV
Sbjct:    1 MQALELHEMEREGFGWTQRACSTVLLACGKAGRLNAALQLIDEMEKRTFSPNDVDYLKLIEACVRGKNVIRAGDRGGSKQALEFLQRMQDKGPVPDIRHYAAAMKVCVTEGDSAKAVNIFRSMRDQVIVMKTYVCV 136

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BLAST of jgi.p|Trimin1|178256 vs. uniprot
Match: A0A835Z5Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z3_9STRA)

HSP 1 Score: 194 bits (492), Expect = 8.890e-59
Identity = 99/121 (81.82%), Postives = 103/121 (85.12%), Query Frame = 0

Query:    9 MEREGFGWTQRACSTVLLACGKAGRLNAALQLIDEMEKRTFSPNDVDYLKLIEACVRGK-NVIRAGDRGGSKQALEFLQRMQDKGPVPDIRHYAAAMKVCVTEGDSAKAVNIFRSMRDQVI 128
            MEREG  WT RACSTVL A GKAGRLNAALQLI EME+R  SP+ +DYL LI AC RGK N  RAGDRGGS+QALE LQRMQDKGPVPDIRHY AAMKVCVTEGDSAKAVNIFRSMRDQ I
Sbjct:    1 MEREGLAWTHRACSTVLQAFGKAGRLNAALQLIGEMEQRGISPDHIDYLTLIGACARGKKNGTRAGDRGGSEQALELLQRMQDKGPVPDIRHYTAAMKVCVTEGDSAKAVNIFRSMRDQGI 121

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BLAST of jgi.p|Trimin1|178256 vs. uniprot
Match: A0A835YWM4_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWM4_9STRA)

HSP 1 Score: 191 bits (485), Expect = 2.720e-56
Identity = 98/133 (73.68%), Postives = 109/133 (81.95%), Query Frame = 0

Query:    2 QALEL-HEMEREGFGWTQRACSTVLLACGKAGRLNAALQLIDEMEKRTFSPNDVDYLKLIEACVRGK----NVIRAGDRGGSKQALEFLQRMQDKGPVPDIRHYAAAMKVCVTEGDSAKAVNIFRSMRDQVIV 129
            +ALEL HE EREG  WT RACST L A GKAGRLNAALQLI EME+R  SP+ +DYL L  AC RG     NVIRAGDRGGS+Q LE L+RMQDKGPVPDIRHY+AAMKVC+TEG+SAKAVNIFRSMRDQ ++
Sbjct:   42 EALELLHETEREGLAWTHRACSTTLQAFGKAGRLNAALQLIGEMEQRGISPDHIDYLTLTGACARGNTRGNNVIRAGDRGGSEQVLEILRRMQDKGPVPDIRHYSAAMKVCMTEGNSAKAVNIFRSMRDQHVM 174

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BLAST of jgi.p|Trimin1|178256 vs. uniprot
Match: A0A835Z1B2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B2_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.540e-50
Identity = 88/110 (80.00%), Postives = 95/110 (86.36%), Query Frame = 0

Query:    3 ALEL-HEMEREGFGWTQRACSTVLLACGKAGRLNAALQLIDEMEKRTFSPNDVDYLKLIEACVRGKNVIRAGDRGGSKQALEFLQRMQDKGPVPDIRHYAAAMKVCVTEG 111
            ALEL H+MEREGFGWT RA  TVL A GK GRLNAAL LIDEME+R FSP D+DYL LI AC RGK+ +RAGDRGGS+QALEFLQRMQDKGPVPDIRHY AAMKVCVT+G
Sbjct:  179 ALELLHKMEREGFGWTLRARGTVLQALGKDGRLNAALHLIDEMEQRNFSPTDLDYLVLIVACARGKSGMRAGDRGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVCVTKG 288

[Close]

BLAST of jgi.p|Trimin1|178256 vs. uniprot
Match: A0A836CK12_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK12_9STRA)

HSP 1 Score: 165 bits (418), Expect = 4.430e-49
Identity = 82/105 (78.10%), Postives = 89/105 (84.76%), Query Frame = 0

Query:   27 ACGKAGRLNAALQLIDEMEKRTFSPNDVDYLKLIEACVRGKNVIRAGDRGGSKQALEFLQRMQDKGPVPDIRHYAAAMKVCVTEGDSAKAVNIFRSMRDQVIVMK 131
            A GKAGRL+AALQLIDEM++R  SPNDVDYL LI AC  GKNV+RAGDRGGSKQALE LQRMQD GPVPDIRHY AAMKVC TEGD AKA+NIF S RD+ + MK
Sbjct:    1 AFGKAGRLSAALQLIDEMKQRGISPNDVDYLMLIVACGHGKNVMRAGDRGGSKQALELLQRMQDTGPVPDIRHYDAAMKVCATEGDLAKAINIFESARDKAMGMK 105

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BLAST of jgi.p|Trimin1|178256 vs. uniprot
Match: A0A836CLV8_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV8_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.170e-47
Identity = 81/110 (73.64%), Postives = 89/110 (80.91%), Query Frame = 0

Query:    9 MEREGFGWTQRACSTVLLACGKAGRLNAALQLIDEMEKRTFSPNDVDYLKLIEACVRGKNVIRAGDRGGSKQALEFLQRMQDKGPVPDIRHYAAAMKVCVTEGDSAKAVN 118
            MEREGF WTQRAC T+L ACGKAGRLNAALQLIDEM++R  SP+  D+L LI AC  GKN +RAG+RGGS+QALE LQRMQDKGPVPDIRHY AAM VC T GD   A N
Sbjct:    1 MEREGFTWTQRACGTLLQACGKAGRLNAALQLIDEMQQRNISPSGADHLILIVACNCGKNGMRAGNRGGSEQALELLQRMQDKGPVPDIRHYGAAMTVCATGGDLVNAAN 110

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BLAST of jgi.p|Trimin1|178256 vs. uniprot
Match: A0A835YW77_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW77_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.750e-39
Identity = 71/96 (73.96%), Postives = 80/96 (83.33%), Query Frame = 0

Query:   33 RLNAALQLIDEMEKRTFSPNDVDYLKLIEACVRGKNVIRAGDRGGSKQALEFLQRMQDKGPVPDIRHYAAAMKVCVTEGDSAKAVNIFRSMRDQVI 128
            RLNAALQLIDEM++R  SP+D DYL LI AC RGK   R GDRGGS+QALE LQRMQDKGPVPD+RHY+AA+ VCVTEGD A AVN F+SMRD+ I
Sbjct:   13 RLNAALQLIDEMQQRNISPSDADYLILIVACDRGKRRTRGGDRGGSEQALELLQRMQDKGPVPDLRHYSAAITVCVTEGDLANAVNTFQSMRDKGI 108

[Close]

BLAST of jgi.p|Trimin1|178256 vs. uniprot
Match: A0A836CEM5_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM5_9STRA)

HSP 1 Score: 137 bits (346), Expect = 3.060e-36
Identity = 69/121 (57.02%), Postives = 84/121 (69.42%), Query Frame = 0

Query:    9 MEREGFGWTQRACSTVLLACGKAGRLNAALQLIDEMEKRTFSPNDVDYLKLIEACVRGKNVIRAGD-RGGSKQALEFLQRMQDKGPVPDIRHYAAAMKVCVTEGDSAKAVNIFRSMRDQVI 128
            ME++GF WTQ AC  VL+ACGKAGRLN A+QLID M     SP+   YL LI+ CVR      AGD RGGSK+ALE LQ M+D GPVP+IRH+ AA+ VCV E +   A+ IFR M+ + I
Sbjct:    1 MEQDGFRWTQVACGAVLVACGKAGRLNDAVQLIDNMRNHRVSPDGRTYLTLIQQCVRNSASTHAGDSRGGSKRALELLQLMKDAGPVPNIRHFTAAIMVCVAERNGISAITIFRMMQHEGI 121

[Close]

BLAST of jgi.p|Trimin1|178256 vs. uniprot
Match: A0A836CIT7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIT7_9STRA)

HSP 1 Score: 132 bits (332), Expect = 6.340e-36
Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = 0

Query:    6 LHEMEREGFGWTQRACSTVLLACGKAGRLNAALQLIDEMEKRTFSPNDVDYLKLIEACVRGKNVIRAGDRGGSKQALEFLQRMQDKGPVPD 96
            L+EMEREGFGWT R CSTVL A GKAGRL  ALQLI++M +R  +PND DYL LI AC RGK+ + AGDRGGS+QALE LQ MQD+GP+PD
Sbjct:   25 LYEMEREGFGWTHRPCSTVLQAFGKAGRLAVALQLINKMRERGINPNDADYLILIMACHRGKSGMLAGDRGGSQQALELLQLMQDRGPMPD 115

[Close]

BLAST of jgi.p|Trimin1|178256 vs. uniprot
Match: A0A835YWR0_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWR0_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.940e-31
Identity = 62/121 (51.24%), Postives = 77/121 (63.64%), Query Frame = 0

Query:    6 LHEMEREGFGWTQRACSTVLLACGKAGRLNAALQLIDEMEKRTFSPNDVDYLKLIEACVRGKNVIRA-GD-RGGSKQALEFLQRMQDKGPVPDIRHYAAAMKVCVTEGDSAKAVNIFRSMR 124
            L  M+     WT RACS  LLACG AGRLN A QLI +M +R  SP   DYL+LI  C +    +RA GD R GSKQA+E LQ M+  G +P+ +HY AA+ VC   GD A AV+IF+ M+
Sbjct:   23 LSHMDNNNTKWTVRACSHALLACGFAGRLNDAFQLIQQMHQRGISPTSGDYLQLIRECHQSDKKVRAAGDSRNGSKQAMELLQHMEQLGVMPNFKHYGAAINVCGKAGDWASAVHIFQQMQ 143

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|178256 vs. uniprot

BLAST of jgi.p|Trimin1|178256 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZB42_9STRA	6.300e-94	100.00	PPR_long domain-containing protein n=1 Tax=Tribone...	[more]
A0A835Z5Z3_9STRA	8.890e-59	81.82	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YWM4_9STRA	2.720e-56	73.68	Smr domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A835Z1B2_9STRA	2.540e-50	80.00	PPR_long domain-containing protein n=1 Tax=Tribone...	[more]
A0A836CK12_9STRA	4.430e-49	78.10	PPR_long domain-containing protein (Fragment) n=1 ...	[more]
A0A836CLV8_9STRA	1.170e-47	73.64	PPR_long domain-containing protein n=1 Tax=Tribone...	[more]
A0A835YW77_9STRA	1.750e-39	73.96	PPR_long domain-containing protein n=1 Tax=Tribone...	[more]
A0A836CEM5_9STRA	3.060e-36	57.02	PPR_long domain-containing protein n=1 Tax=Tribone...	[more]
A0A836CIT7_9STRA	6.340e-36	70.33	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YWR0_9STRA	4.940e-31	51.24	PPR_long domain-containing protein (Fragment) n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033443	Pentacotripeptide-repeat region of PRORP	PFAM	PF17177	PPR_long	coord: 24..127 e-value: 6.7E-8 score: 32.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 2..136 e-value: 3.7E-24 score: 87.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 20..52 e-value: 1.1E-6 score: 26.4
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 17..51 score: 10.084454
None	No IPR available	PANTHER	PTHR47937	PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN	coord: 25..135 coord: 6..65

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_167	contig	Contig_167:221584..221994 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|178256	mRNA_16957	Tribonema minus UTEX_B_3156	mRNA	Contig_167 221584..221994 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|178256|e_gw1.167.2.1 ID=Trimin1|178256|e_gw1.167.2.1|Name=jgi.p|Trimin1|178256|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=137bp
MQALELHEMEREGFGWTQRACSTVLLACGKAGRLNAALQLIDEMEKRTFS
PNDVDYLKLIEACVRGKNVIRAGDRGGSKQALEFLQRMQDKGPVPDIRHY
AAAMKVCVTEGDSAKAVNIFRSMRDQVIVMKTYVCV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR033443	PPR_long
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat