mRNA_16954 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|178230
Unique NamemRNA_16954
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|178230 vs. uniprot
Match: A0A835Z5R5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5R5_9STRA)

HSP 1 Score: 259 bits (663), Expect = 7.060e-88
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 
Query:    1 MPTPVVAPQRTILHELKQQAALQPTKPLYIWHAADGSVTEQYTYSTFDRLTDEMALRIYQTWGSPAKTPSSGRHFAVLVYPPGLEFMVAFVACLKANVVAVPVCPIDPRRIGTDAHRLYGIVKAS 375
            MPTPVVAPQRTILHELKQQAALQPTKPLYIWHAADGSVTEQYTYSTFDRLTDEMALRIYQTWGSPAKTPSSGRHFAVLVYPPGLEFMVAFVACLKANVVAVPVCPIDPRRIGTDAHRLYGIVKAS
Sbjct:    1 MPTPVVAPQRTILHELKQQAALQPTKPLYIWHAADGSVTEQYTYSTFDRLTDEMALRIYQTWGSPAKTPSSGRHFAVLVYPPGLEFMVAFVACLKANVVAVPVCPIDPRRIGTDAHRLYGIVKAS 125
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BLAST of jgi.p|Trimin1|178230 vs. uniprot
Match: A0A1V9ZKA6_9STRA (Fatty-acid-CoA ligase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZKA6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 8.280e-16
Identity = 48/105 (45.71%), Postives = 62/105 (59.05%), Query Frame = 1 
Query:   31 TILHELKQQAALQPTKPLYIWHAADGSVTEQYTYSTFDRLTDEMALRIYQTWGSPAKTPSSGRHFA-VLVYPPGLEFMVAFVACLKANVVAVPVCPIDPRRIGTD 342
            T+L  L Q A  QP K +Y +    GSV    +Y  FD  T  +A  +  +  S AK     ++   VLVYPPGL+F+VAFVACL+A VVAVPV P DPR++  D
Sbjct:    5 TLLDRLNQWALEQPEKTIYSFADDSGSVVASLSYKDFDEETANLARLMLASPSSHAKGMGLKKNDKLVLVYPPGLDFIVAFVACLRAGVVAVPVYPPDPRKLKKD 109
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BLAST of jgi.p|Trimin1|178230 vs. uniprot
Match: A0A1V9Z1E6_9STRA (Fatty-acid-CoA ligase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1E6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.130e-15
Identity = 49/105 (46.67%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:   31 TILHELKQQAALQPTKPLYIWHAADGSVTEQYTYSTFDRLTDEMALRIYQTWGSPAKTPSSGRHFAVL-VYPPGLEFMVAFVACLKANVVAVPVCPIDPRRIGTD 342
            T+L  L + A+ QP K +Y +   +G VT   TY  FD  T  +A  +  +  S AK     R   VL VYPPGL+F+VAFVACL+A VVAVPV P DPR++  D
Sbjct:    4 TLLARLDRWASAQPDKTIYAFADDNGIVTATLTYKEFDDRTLNLARWMLASPSSNAKGMGLQRDEKVLLVYPPGLDFIVAFVACLRAGVVAVPVYPPDPRKLRKD 108
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BLAST of jgi.p|Trimin1|178230 vs. uniprot
Match: A0A7S1C448_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C448_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.460e-14
Identity = 44/116 (37.93%), Postives = 64/116 (55.17%), Query Frame = 1 
Query:   28 RTILHELKQQAALQPTKPLYIWHAADGSVTEQYTYSTFDRLTDEMALRIYQTWGSPAKTPSSGRHFAVLVYPPGLEFMVAFVACLKANVVAVPVCPIDPRRIGTDAHRLYGIVKAS 375
            R +L  L+  A+ QP K L+ +   DG  T + TY   +  T  +A  I              R   +LVYPP L+F+VAF+ACL+A VVAVPV P DPRR+  + + ++  ++AS
Sbjct:   17 RQLLPALRHWASTQPDKVLFTYLGDDGEETRRLTYGDVEAQTRRLAQHILSNTAEGLGVGQGDR--VLLVYPPSLDFIVAFLACLRAGVVAVPVYPPDPRRLKKNMY-MFASIQAS 129
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BLAST of jgi.p|Trimin1|178230 vs. uniprot
Match: T0PVR0_SAPDV (Carrier domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0PVR0_SAPDV)

HSP 1 Score: 77.0 bits (188), Expect = 6.390e-14
Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:   31 TILHELKQQAALQPTKPLYIWHAADGSVTEQYTYSTFDRLTDEMALRIYQTWGSPAKTPSSGR---HFAVLVYPPGLEFMVAFVACLKANVVAVPVCPIDPRRIGTD 342
            T+L  L +  A QP K +Y +   +G +T   TY   D  T    L + +   +PA     G       +LVYPPGL+F+VAFVACL+A VVAVPV P DPR++  D
Sbjct:    4 TLLARLDRWGAEQPEKTVYAFADDNGIITASLTYKELDERT----LNLARWMRAPASAKGMGLSPDEKVLLVYPPGLDFIVAFVACLRAGVVAVPVYPPDPRKLRKD 106
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BLAST of jgi.p|Trimin1|178230 vs. uniprot
Match: A0A6A5ALQ8_9STRA (AMP-binding domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ALQ8_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.370e-14
Identity = 41/111 (36.94%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:   13 VVAPQRTILHELKQQAALQPTKPLYIWHAADGSVTEQYTYSTFDRLTDEMALRIYQTWGSPAKTPSSGR-HFAVLVYPPGLEFMVAFVACLKANVVAVPVCPIDPRRIGTD 342
            ++    T+L  L   A +QP K L+ +   +G VT+  TY      +  +A  +  +    +K     +    +LVYPPGL+F+VAF+ACL+A VVAVPV P DPR++  D
Sbjct:    1 MIMADNTVLGRLDHWATVQPKKNLFAFVDDNGQVTDSVTYDDVQSRSSNLAKWMLTSPSVSSKGLGLSKGDIVLLVYPPGLDFIVAFLACLRAGVVAVPVYPPDPRKLRKD 111
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BLAST of jgi.p|Trimin1|178230 vs. uniprot
Match: A0A067BNK6_SAPPC (AMP-binding domain-containing protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BNK6_SAPPC)

HSP 1 Score: 76.3 bits (186), Expect = 1.050e-13
Identity = 44/107 (41.12%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:   31 TILHELKQQAALQPTKPLYIWHAADGSVTEQYTYSTFDRLTDEMALRIYQTWGSPAKTPSSGR---HFAVLVYPPGLEFMVAFVACLKANVVAVPVCPIDPRRIGTD 342
            T+L  L +  A QP K +Y +   +G +T   TY   D  T    L + +   +PA +   G       +LVYPPGL+F+VAF+ACL+A VVAVPV P DPR++  D
Sbjct:    4 TLLARLDRWGAEQPEKTVYAFADDNGIITASLTYKELDERT----LNLARWMRAPASSKGMGLLPDEKVLLVYPPGLDFIVAFLACLRAGVVAVPVYPPDPRKLRKD 106
[Close]
BLAST of jgi.p|Trimin1|178230 vs. uniprot
Match: W4FD50_9STRA (Carrier domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FD50_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 5.630e-13
Identity = 41/111 (36.94%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:   13 VVAPQRTILHELKQQAALQPTKPLYIWHAADGSVTEQYTYSTFDRLTDEMALRIYQTWGSPAKTPSSGR-HFAVLVYPPGLEFMVAFVACLKANVVAVPVCPIDPRRIGTD 342
            ++    T+L  L   A +QP K L+ +   +G VT+  TY      +  +A  +  +    +K     +    +LVYPPGL+F+VAF+ACL+A VVAVPV P DPR++  D
Sbjct:    1 MIMADNTVLGRLDHWATVQPKKNLFAFVDDNGQVTDSVTYDDVQSRSSNLAKWMLTSPSVSSKGLGLSKGDIVLLVYPPGLDFIVAFLACLRAGVVAVPVYPPDPRKLRKD 111
[Close]
BLAST of jgi.p|Trimin1|178230 vs. uniprot
Match: A0A835ZFH6_9STRA (AMP-binding enzyme-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFH6_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 7.490e-13
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:  136 TFDRLTDEMALRIYQTWGSPAKTPSSGRHFAVLVYPPGLEFMVAFVACLKANVVAVPVCPIDPRRIGTDAHRLYGIVK 369
            T+  L   +A RI QTWG+    P SGRH A+LVYP GL+ +VA VACLKANV AVP+   +P +      RL  I K
Sbjct:    9 TWIPLACSIATRILQTWGTRDCVPPSGRHVALLVYPDGLDVLVALVACLKANVCAVPLQAPEPCKWAAATRRLNCIAK 86
[Close]
BLAST of jgi.p|Trimin1|178230 vs. uniprot
Match: A0A7R9U2M5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2M5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.950e-12
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 1 
Query:   34 ILHELKQQAALQPTKPLYIWHAADGSVTEQYTYSTFDRLTDEMALRIYQTWGSPAKTPSSGRHFAVLVYPPGLEFMVAFVACLKANVVAVPVCPIDPRRIGTDAHRLYGIVKAS 375
            +L  L      QP K +  +    G++ E+Y+Y+     +D++A R+ +   S   +P      A+LVY PGL+F+VAF+ACLKA ++AVPV P DP ++  D H    I   S
Sbjct:    4 LLERLSHWVQTQPEKDVLHFCDDRGAIQEKYSYAELAAASDDLAQRLLED-ESIGLSPGDR---ALLVYLPGLDFLVAFLACLKARIIAVPVFPPDPSKLRKDLHMFCAIHDTS 113
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178230 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5R5_9STRA7.060e-88100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1V9ZKA6_9STRA8.280e-1645.71Fatty-acid-CoA ligase n=1 Tax=Thraustotheca clavat... [more]
A0A1V9Z1E6_9STRA1.130e-1546.67Fatty-acid-CoA ligase n=1 Tax=Achlya hypogyna TaxI... [more]
A0A7S1C448_9STRA3.460e-1437.93Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
T0PVR0_SAPDV6.390e-1442.06Carrier domain-containing protein n=2 Tax=Saproleg... [more]
A0A6A5ALQ8_9STRA7.370e-1436.94AMP-binding domain-containing protein n=1 Tax=Apha... [more]
A0A067BNK6_SAPPC1.050e-1341.12AMP-binding domain-containing protein (Fragment) n... [more]
W4FD50_9STRA5.630e-1336.94Carrier domain-containing protein n=2 Tax=Aphanomy... [more]
A0A835ZFH6_9STRA7.490e-1350.00AMP-binding enzyme-domain-containing protein n=1 T... [more]
A0A7R9U2M5_9STRA1.950e-1235.96Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_167contigContig_167:215136..215513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|178230|e_gw1.167.29.1
GOsGO:0006629,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009273,GO:0009987,GO:0042546,GO:0044085,GO:0044238,GO:0071554,GO:0071704,GO:0071766,GO:0071840,GO:1901576
Descriptionfatty acid biosynthetic process
COG categoryIQ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0318@1|root,KOG3628@2759|Eukaryota
Evalue1.05e-14
Seed ortholog112098.XP_008616893.1
Hectar predicted targeting categoryother localisation
TranscriptId178552
TrackFilteredModels1
ProteinId178230
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178230gene_16954Tribonema minus UTEX_B_3156 geneContig_167 215136..215513 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16954_1exon_16954_1Tribonema minus UTEX_B_3156 exonContig_167 215136..215513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16954CDS_16954Tribonema minus UTEX_B_3156 CDSContig_167 215136..215513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178230Trimin1|178230|e_gw1.167.29.1Tribonema minus UTEX_B_3156 polypeptideContig_167 215136..215513 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16954 ID=mRNA_16954|Name=jgi.p|Trimin1|178230|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_167:215136..215513- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGACGCCAGTCGTCGCTCCCCAGCGCACCATCCTGCACGAGCTCAA
GCAGCAGGCCGCCCTGCAGCCCACAAAACCGCTCTACATATGGCACGCCG
CAGACGGTTCCGTGACAGAGCAGTACACCTACAGCACCTTCGACAGGCTC
ACCGATGAGATGGCCTTGCGCATCTACCAAACGTGGGGATCACCGGCCAA
AACCCCCTCTAGCGGGCGTCACTTCGCGGTGCTGGTGTACCCGCCGGGCC
TGGAGTTCATGGTTGCGTTTGTGGCATGTCTCAAGGCAAATGTGGTGGCG
GTGCCCGTGTGCCCCATCGATCCGCGGCGGATAGGGACGGACGCGCACCG
GCTGTACGGCATTGTAAAGGCAAGTTAA
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protein sequence of jgi.p|Trimin1|178230

>Trimin1|178230|e_gw1.167.29.1 ID=Trimin1|178230|e_gw1.167.29.1|Name=jgi.p|Trimin1|178230|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp
MPTPVVAPQRTILHELKQQAALQPTKPLYIWHAADGSVTEQYTYSTFDRL
TDEMALRIYQTWGSPAKTPSSGRHFAVLVYPPGLEFMVAFVACLKANVVA
VPVCPIDPRRIGTDAHRLYGIVKAS*
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mRNA from alignment at Contig_167:215136..215513-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16954 ID=mRNA_16954|Name=jgi.p|Trimin1|178230|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_167:215136..215513- (Tribonema minus UTEX_B_3156 )
ATGCCGACGCCAGTCGTCGCTCCCCAGCGCACCATCCTGCACGAGCTCAA
GCAGCAGGCCGCCCTGCAGCCCACAAAACCGCTCTACATATGGCACGCCG
CAGACGGTTCCGTGACAGAGCAGTACACCTACAGCACCTTCGACAGGCTC
ACCGATGAGATGGCCTTGCGCATCTACCAAACGTGGGGATCACCGGCCAA
AACCCCCTCTAGCGGGCGTCACTTCGCGGTGCTGGTGTACCCGCCGGGCC
TGGAGTTCATGGTTGCGTTTGTGGCATGTCTCAAGGCAAATGTGGTGGCG
GTGCCCGTGTGCCCCATCGATCCGCGGCGGATAGGGACGGACGCGCACCG
GCTGTACGGCATTGTAAAGGCAAGTTAA
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Coding sequence (CDS) from alignment at Contig_167:215136..215513-

>mRNA_16954 ID=mRNA_16954|Name=jgi.p|Trimin1|178230|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=378bp|location=Sequence derived from alignment at Contig_167:215136..215513- (Tribonema minus UTEX_B_3156 )
ATGCCGACGCCAGTCGTCGCTCCCCAGCGCACCATCCTGCACGAGCTCAA
GCAGCAGGCCGCCCTGCAGCCCACAAAACCGCTCTACATATGGCACGCCG
CAGACGGTTCCGTGACAGAGCAGTACACCTACAGCACCTTCGACAGGCTC
ACCGATGAGATGGCCTTGCGCATCTACCAAACGTGGGGATCACCGGCCAA
AACCCCCTCTAGCGGGCGTCACTTCGCGGTGCTGGTGTACCCGCCGGGCC
TGGAGTTCATGGTTGCGTTTGTGGCATGTCTCAAGGCAAATGTGGTGGCG
GTGCCCGTGTGCCCCATCGATCCGCGGCGGATAGGGACGGACGCGCACCG
GCTGTACGGCATTGTAAAGGCAAGTTAA
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