Trimin1|353492|estExt_Genemark1.C_Ctg_1660024 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353492
Unique NameTrimin1|353492|estExt_Genemark1.C_Ctg_1660024
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length200
Homology
BLAST of jgi.p|Trimin1|353492 vs. uniprot
Match: A0A835Z5U3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5U3_9STRA)

HSP 1 Score: 358 bits (918), Expect = 2.430e-124
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query:    1 MKFLVLCLAVVVASAAAFVACPTSSRLVASNTCSRSASSLRMSDDDEDALTAAARAARKAGPNDRVVEIRKPLGLVLEENEKGDVFITKVKDNSNASRNPKVFPGDKISFISATFGDDLWSVRGAGLARVQNAVRVRQGDSVRLVLESTNESKSKIAAAAAEAKERKKYEEDAQVKRDRLLKALDEDTKKKSKKFFGLF 199
            MKFLVLCLAVVVASAAAFVACPTSSRLVASNTCSRSASSLRMSDDDEDALTAAARAARKAGPNDRVVEIRKPLGLVLEENEKGDVFITKVKDNSNASRNPKVFPGDKISFISATFGDDLWSVRGAGLARVQNAVRVRQGDSVRLVLESTNESKSKIAAAAAEAKERKKYEEDAQVKRDRLLKALDEDTKKKSKKFFGLF
Sbjct:    1 MKFLVLCLAVVVASAAAFVACPTSSRLVASNTCSRSASSLRMSDDDEDALTAAARAARKAGPNDRVVEIRKPLGLVLEENEKGDVFITKVKDNSNASRNPKVFPGDKISFISATFGDDLWSVRGAGLARVQNAVRVRQGDSVRLVLESTNESKSKIAAAAAEAKERKKYEEDAQVKRDRLLKALDEDTKKKSKKFFGLF 199          
BLAST of jgi.p|Trimin1|353492 vs. uniprot
Match: D8LTE7_ECTSI (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTE7_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 4.620e-45
Identity = 90/181 (49.72%), Postives = 130/181 (71.82%), Query Frame = 0
Query:   22 PTSSRLVASNTCSRSASSLRMSDDDEDA--LTAAARAARKAGPNDRVVEIRKPLGLVLEENEKGDVFITKVKDNSNASRNPKVFPGDKISFISATFGDDLWSVRGAGLARVQNAVRVRQGDSVRLVLESTNESKSKIAAAAAEAKERKKYEEDAQVKRDRLLKALDEDTK-KKSKKFFGLF 199
            P+ S    S   SR   S+    D+E A  L+  ARAARK GPNDRVVE+RKP+GLVLEE+E+G+V+I ++   SNASR  ++  GDKI+F+SATFG+++WS +G GL+RVQ+A+R+R G +V+LVLE++ E++ K+A  +A  K  +  +E  + KRDRLL+ L +DTK +K K ++GLF
Sbjct:   38 PSGSTSAVSRQPSRGMLSMASKKDEEAARQLSNMARAARKVGPNDRVVELRKPMGLVLEEDERGNVYIVEIVPGSNASRKKQINVGDKITFVSATFGEEIWSAQGVGLSRVQSAIRIRSGPTVKLVLETSKEAEKKMARDSARLKRLQDAKETEEDKRDRLLRELSDDTKVQKKKPWYGLF 218          
BLAST of jgi.p|Trimin1|353492 vs. uniprot
Match: A0A6U1P4I4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1P4I4_9STRA)

HSP 1 Score: 134 bits (336), Expect = 5.770e-36
Identity = 76/156 (48.72%), Postives = 103/156 (66.03%), Query Frame = 0
Query:   40 LRMSDDDEDALTAAARAARKAGPNDRVVEIRKPLGLVLEENEKGDVFITKVKDNSNASRNPKVFPGDKISFISATFGDDLWSVRGAGLARVQNAVRVRQGDSVRLVLESTNESKSKIAAAAAEAKERKKYEEDAQVKRDRLLKALD--EDTKKKSK 193
            ++MS  D++ L   +RA RK G NDRV E+ KPLG+VLEE+E+GDV++  V    NA+R  K+F GDK+  ISATFG+++WS RG G+  V NAV+VR G+SV++VLEST ESK K   AA  A E +      + K  +LL  LD  +D  +K K
Sbjct:   40 IKMSLSDDEELRKQSRALRKPGANDRVAEVNKPLGMVLEEDERGDVYVADVIPGGNAARTGKIFQGDKVVMISATFGEEVWSTRGVGIGSVMNAVKVRSGNSVKVVLESTAESKQKAQEAAMTAAEIRAARAAEEEKNRQLLAELDATDDALRKKK 195          
BLAST of jgi.p|Trimin1|353492 vs. uniprot
Match: A0A1E7FDA8_9STRA (PDZ domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDA8_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.610e-35
Identity = 83/177 (46.89%), Postives = 115/177 (64.97%), Query Frame = 0
Query:   24 SSRLVASNTCSRSASSLRMSDDDEDALTAAARAARKAGPNDRVVEIRKPLGLVLEENEKGDVFITKVKDNSNASRNPKVFPGDKISFISATFGDDLWSVRGAGLARVQNAVRVRQGDSVRLVLESTNESKSKIAAAAAEAKERKKYEEDAQVKRDRLLKALDED-TKKKSKKFFGLF 199
            S+  + S +CS S ++L M  ++ED L AA R++R AG +D VVE++KPLGLVL +++ G+V++  V    NA+R  KV  GD ++ +SATFGD +WS RG GL RV  A+RVR G  V LV ES N+ K K A+ + + +  K   E AQ K+D LL  L++D TK K  KF GLF
Sbjct:   37 STSTLVSPSCS-STTALFMGKEEEDLLRAA-RSSRSAGNDDEVVELQKPLGLVLNQDDAGNVYVETVAARGNAARTGKVKEGDIVTMVSATFGDQMWSTRGVGLTRVLTAIRVRTGPRVSLVFESQNQYKKKAASTSKQQQAMKDAREAAQAKKDTLLSELEQDETKLKKGKFLGLF 211          
BLAST of jgi.p|Trimin1|353492 vs. uniprot
Match: A0A7S1DAB5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DAB5_CYCTE)

HSP 1 Score: 133 bits (334), Expect = 1.740e-35
Identity = 75/147 (51.02%), Postives = 99/147 (67.35%), Query Frame = 0
Query:   54 ARAARKAGPNDRVVEIRKPLGLVLEENEKGDVFITKVKDNSNASRNPKVFPGDKISFISATFGDDLWSVRGAGLARVQNAVRVRQGDSVRLVLESTNESKSKIAAAAAEAKERKKYEEDAQVKRDRLLKALDEDTKKKS-KKFFGLF 199
            AR +R A   DRVVE+ +PLGLVL ++EKG+V++  V    NA+R  KV  GD ++  SATFGD +WS RG GL RV NA++VR G +V+LVLE+  ESK K A  A + K  ++    AQ KRD LL  L++D K+ + KKFFGLF
Sbjct:   68 ARESRSADVGDRVVELVRPLGLVLNQDEKGNVYVETVAPRGNAARTGKVKEGDIVTMCSATFGDQMWSTRGVGLNRVLNAIKVRSGATVKLVLENPQESKQKAAMTAKQIKAAEEARRAAQAKRDELLNELEQDEKRLNPKKFFGLF 214          
BLAST of jgi.p|Trimin1|353492 vs. uniprot
Match: A0A7S4IT66_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IT66_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.500e-35
Identity = 74/146 (50.68%), Postives = 99/146 (67.81%), Query Frame = 0
Query:   55 RAARKAGPNDRVVEIRKPLGLVLEENEKGDVFITKVKDNSNASRNPKVFPGDKISFISATFGDDLWSVRGAGLARVQNAVRVRQGDSVRLVLESTNESKSKIAAAAAEAKERKKYEEDAQVKRDRLLKALDEDTKKKSK-KFFGLF 199
            +A+R AG  DRVVE+R+PLGLVL ++  G+V++  V    NA+R  +V  GD ++  SATFGD +WS RGAGL RV  A+RVR G +V+LV EST ESK+K+   A   K  ++   +AQ KRD+LL  L++D KK  K KF GLF
Sbjct:   57 KASRAAGAEDRVVELRRPLGLVLNDDGNGNVYVETVAPRGNAARTGEVKEGDLVTMCSATFGDQMWSCRGAGLTRVLAAIRVRAGPTVKLVFESTAESKTKVKRGAKAVKAAEEARANAQAKRDQLLDELEQDEKKLKKGKFLGLF 202          
BLAST of jgi.p|Trimin1|353492 vs. uniprot
Match: A0A7R9W701_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W701_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.120e-33
Identity = 72/146 (49.32%), Postives = 99/146 (67.81%), Query Frame = 0
Query:   55 RAARKAGPNDRVVEIRKPLGLVLEENEKGDVFITKVKDNSNASRNPKVFPGDKISFISATFGDDLWSVRGAGLARVQNAVRVRQGDSVRLVLESTNESKSKIAAAAAEAKERKKYEEDAQVKRDRLLKALDEDTKKKSK-KFFGLF 199
            +++R AG +DRVVE+R+PLGLVL E+  G+V++  V    NA+R  +V  GD ++  SATFGD +WS RGAGL RV  A+RVR G +V+LV EST+E+++K    A  AK  +     AQ KRD+LL  L++D K+  K KF GLF
Sbjct:   57 KSSRAAGASDRVVELRRPLGLVLNEDGDGNVYVETVAPRGNAARTGEVREGDLVTMCSATFGDQMWSCRGAGLTRVLAAIRVRAGPTVKLVFESTSETQNKAKMGAKAAKAAEDARAKAQAKRDQLLDELEQDEKRLKKGKFLGLF 202          
BLAST of jgi.p|Trimin1|353492 vs. uniprot
Match: A0A7S4AUR0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AUR0_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.420e-33
Identity = 76/165 (46.06%), Postives = 108/165 (65.45%), Query Frame = 0
Query:   36 SASSLRMSDDDEDALTAAARAARKAGPNDRVVEIRKPLGLVLEENEKGDVFITKVKDNSNASRNPKVFPGDKISFISATFGDDLWSVRGAGLARVQNAVRVRQGDSVRLVLESTNESKSKIAAAAAEAKERKKYEEDAQVKRDRLLKALDEDTKKKSK-KFFGLF 199
            S ++L M++ D+D L ++ R+ R+AG +D +VE+ +PLGLVL ++E G+V++  V    NA+R  KV  GD ++  SATFGDD+WS RG GL RV  A+RVR G  V+LV E+ N+SK K A +  + K        AQ K+D+LL  L++D KK  K KF GLF
Sbjct:   35 STTALSMANGDDDLLRSS-RSKRQAGNDDNLVELTRPLGLVLNQDENGNVYVETVAPRGNAARTGKVKEGDIVTMCSATFGDDMWSTRGVGLTRVLAAIRVRAGPYVKLVFETPNQSKIKAANSTKQRKAAADARAAAQAKKDKLLGQLEDDEKKLKKGKFLGLF 198          
BLAST of jgi.p|Trimin1|353492 vs. uniprot
Match: B8C928_THAPS (PDZ domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C928_THAPS)

HSP 1 Score: 127 bits (318), Expect = 2.750e-33
Identity = 75/161 (46.58%), Postives = 103/161 (63.98%), Query Frame = 0
Query:   40 LRMSDDDEDALTAAARAARKAGPNDRVVEIRKPLGLVLEENEKGDVFITKVKDNSNASRNPKVFPGDKISFISATFGDDLWSVRGAGLARVQNAVRVRQGDSVRLVLESTNESKSKIAAAAAEAKERKKYEEDAQVKRDRLLKALDEDTKKKSK-KFFGLF 199
            L+M+ D++       + AR A   D +VE+++PLGLVL+E++ G+VF+  V    NA+R+ +V  GD ++  SATFGD +WS RGAGL RV  A+RVR G +V LV EST + K K A  A +A   K+ +E AQ KRD LL  L+ D +K  K KF GLF
Sbjct:   37 LQMAADEDQDFLRWTKQARSASATDNLVELKRPLGLVLDEDDNGNVFVQTVAPRGNAARSGQVKEGDIVTMCSATFGDQMWSTRGAGLTRVLAAIRVRAGPTVSLVFESTTQRKVKGAEVAKQAAAAKEAKERAQKKRDELLSELEADERKLKKGKFLGLF 197          
BLAST of jgi.p|Trimin1|353492 vs. uniprot
Match: A0A4D9DC09_9STRA (PDZ domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DC09_9STRA)

HSP 1 Score: 126 bits (316), Expect = 6.290e-33
Identity = 75/147 (51.02%), Postives = 101/147 (68.71%), Query Frame = 0
Query:   55 RAARKAGPNDRVVEIRKPLGLVLEENEKGDVFITKVKDNSNASRNPKVFPGDKISFISATFGDDLWSVRGAGLARVQNAVRVRQGDSVRLVLESTNES--KSKIAAAAAEAKERKKYEEDAQVKRDRLLKALDEDTKKKSKKFFGLF 199
            RAARK GP D VVE++KPLG+VLEE+EKG+V++ ++    NA R+ KV  GD ++ ISATFGD+ WS RGAGL  +  A++VRQG++V++VLE +  +  KS   A A +AK   K  +DA      LL+ L ED +K  KKFFGLF
Sbjct:   62 RAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKVEKGDLVTMISATFGDECWSARGAGLGMIMQAIKVRQGNTVKIVLERSKAAPKKSVFKAPAPKAKPAPKKPDDAT-----LLRQL-EDEEKGKKKFFGLF 202          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353492 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5U3_9STRA2.430e-124100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LTE7_ECTSI4.620e-4549.72PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6U1P4I4_9STRA5.770e-3648.72Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1E7FDA8_9STRA1.610e-3546.89PDZ domain-containing protein n=1 Tax=Fragilariops... [more]
A0A7S1DAB5_CYCTE1.740e-3551.02Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4IT66_9STRA2.500e-3550.68Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R9W701_9STRA1.120e-3349.32Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S4AUR0_9STRA1.420e-3346.06Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
B8C928_THAPS2.750e-3346.58PDZ domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A4D9DC09_9STRA6.290e-3351.02PDZ domain-containing protein n=2 Tax=Monodopsidac... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 166..186
NoneNo IPR availablePANTHERPTHR47661PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTICcoord: 21..148
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..21
score: 5.0
IPR036034PDZ superfamilyGENE3D2.30.42.10coord: 63..150
e-value: 3.3E-7
score: 32.2
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 70..149

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_166contigContig_166:206643..210134 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353492mRNA_13318Tribonema minus UTEX_B_3156 mRNAContig_166 206576..210360 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353492|estExt_Genemark1.C_Ctg_1660024 ID=Trimin1|353492|estExt_Genemark1.C_Ctg_1660024|Name=jgi.p|Trimin1|353492|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=200bp
MKFLVLCLAVVVASAAAFVACPTSSRLVASNTCSRSASSLRMSDDDEDAL
TAAARAARKAGPNDRVVEIRKPLGLVLEENEKGDVFITKVKDNSNASRNP
KVFPGDKISFISATFGDDLWSVRGAGLARVQNAVRVRQGDSVRLVLESTN
ESKSKIAAAAAEAKERKKYEEDAQVKRDRLLKALDEDTKKKSKKFFGLF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf