mRNA_13295 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|353481
Unique Name	mRNA_13295
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|353481 vs. uniprot
Match: A0A836CIU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIU2_9STRA)

HSP 1 Score: 515 bits (1326), Expect = 1.940e-182
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 1

Query:   19 MHVASVCVNFALMSSLLPASAFSAAAAMPPSSPTTKSVWMQSASSAPLHRASPALHGVRAGCSAERRSRLATALRMSGGAAADDNTVASTSGRSSFGLASAWGVLSVLAILGNAVKRLAPIAMQPFKSGDLTRAHWGMYVGFAVLMAYAEGYKAFQKKFSPMVVQRALTLDKSAGPLRLVLAGPYSMGLFHASRKRKIVSWTLSFAVLGLVQAVRKLPYPWRSIIDGGVVAGLSWGSGAIVYYWVRSWFGTDPGVDAQLPLEEPAKTE 822
            MHVASVCVNFALMSSLLPASAFSAAAAMPPSSPTTKSVWMQSASSAPLHRASPALHGVRAGCSAERRSRLATALRMSGGAAADDNTVASTSGRSSFGLASAWGVLSVLAILGNAVKRLAPIAMQPFKSGDLTRAHWGMYVGFAVLMAYAEGYKAFQKKFSPMVVQRALTLDKSAGPLRLVLAGPYSMGLFHASRKRKIVSWTLSFAVLGLVQAVRKLPYPWRSIIDGGVVAGLSWGSGAIVYYWVRSWFGTDPGVDAQLPLEEPAKTE
Sbjct:    1 MHVASVCVNFALMSSLLPASAFSAAAAMPPSSPTTKSVWMQSASSAPLHRASPALHGVRAGCSAERRSRLATALRMSGGAAADDNTVASTSGRSSFGLASAWGVLSVLAILGNAVKRLAPIAMQPFKSGDLTRAHWGMYVGFAVLMAYAEGYKAFQKKFSPMVVQRALTLDKSAGPLRLVLAGPYSMGLFHASRKRKIVSWTLSFAVLGLVQAVRKLPYPWRSIIDGGVVAGLSWGSGAIVYYWVRSWFGTDPGVDAQLPLEEPAKTE 268

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BLAST of jgi.p|Trimin1|353481 vs. uniprot
Match: A0A835ZF77_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF77_9STRA)

HSP 1 Score: 270 bits (691), Expect = 1.280e-86
Identity = 138/204 (67.65%), Postives = 161/204 (78.92%), Query Frame = 1

Query:  235 ALRMSGGAAADDNTVA----STSGRSSFGLASAWGVLSVLAILGNAVKRLAPIAMQPFKSGDLTRAHWGMYVGFAVLMAYAEGYKAFQKKFSPMVVQRALTLDK---SAGPLRLVLAGPYSMGLFHASRKRKIVSWTLSFAVLGLVQAVRKLPYPWRSIIDGGVVAGLSWGSGAIVYYWVRSWFGTDPGVDAQLPL---EEPAK 816
            ALR+SGG      +VA    S   RSSFG ASAWGVLSVL+IL  A++RL PIA+QPFK+GDL+  HW +Y+ F  LMAY EG+KAFQKKFSPMVVQRALTLD+   S GPLR++LAGPY MGLF+A+RKRKIVSWTL  +V+ LV  VR+LPYPWRSIID GVVAGLSWG+ AI+Y+WVRSWFG  PGVDAQ+P    E PAK
Sbjct:   20 ALRLSGGGIGRGKSVAPPPPSAPARSSFGFASAWGVLSVLSILAGALRRLVPIALQPFKAGDLSYGHWALYMSFVALMAYVEGHKAFQKKFSPMVVQRALTLDQARTSFGPLRIILAGPYCMGLFYATRKRKIVSWTLYISVIALVTVVRQLPYPWRSIIDAGVVAGLSWGASAILYFWVRSWFGRAPGVDAQMPESKEEAPAK 223

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BLAST of jgi.p|Trimin1|353481 vs. uniprot
Match: A0A836CMT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMT5_9STRA)

HSP 1 Score: 208 bits (529), Expect = 9.550e-62
Identity = 107/201 (53.23%), Postives = 140/201 (69.65%), Query Frame = 1

Query:  235 ALRMSGGAAADDNTVASTSGRSSFGLASAWGVLSVLAILGNAVKRLAPIAMQPFKSGD---LTRAHWGMYVGFAVLMAYAEGYKAFQKKFSPMVVQRALTLDKS-AGPLRLVLAGPYSMGLFHASRKRKIVSWTLSFAVLGLVQAVRKLPYPWRSIIDGGVVAGLSWGSGAIVYYWVRSWFGTDPGVDAQLPLE-EPAKTE 822
            AL   GGAA+ D  + S + +   G AS+WGVLSVLAI  NA +RL P+A++P +  D   LT   W  Y G   L+ Y +G +A ++KFS  VVQRALTLD+  A PLR++LAGPYSMGLF A+R+RK  SW +  A +G+++ ++K+PYPWRSI+D GV+AGL WG GA+ YYWVRSW G +PGVD Q+P   E A TE
Sbjct:   65 ALLSGGGAASVDTPMNSKAVK--IGWASSWGVLSVLAIFANAARRLGPVAIEPLQMSDKGGLTTVQWVCYAGCTALIGYMKGERAIRRKFSRHVVQRALTLDQGEATPLRVLLAGPYSMGLFRANRRRKASSWGMLVAAVGIIKVIKKMPYPWRSIVDAGVLAGLCWGGGAVAYYWVRSWSGINPGVDPQMPKRSEAAATE 263

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BLAST of jgi.p|Trimin1|353481 vs. uniprot
Match: W7TVP9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVP9_9STRA)

HSP 1 Score: 199 bits (505), Expect = 8.030e-58
Identity = 103/195 (52.82%), Postives = 138/195 (70.77%), Query Frame = 1

Query:  226 LATALRMSGGAAADDNTVASTSGRSSFGLASAWGVLSVLAILGNAVKRLAPIAMQPFKSGD----LTRAHWGMYVGFAVLMAYAEGYKAFQKKFSPMVVQRALTLDKSAGPLRLVLAGPYSMGLFHASRKRKIVSWTLSFAVLGLVQAVRKLPYPWRSIIDGGVVAGLSWGSGAIVYYWVRSWFGTDPGVDAQLP 798
            +A   +++GGAA        TS + SF L++ WGV+ V+A+L NA++RL PIA++PFK        T  HW  YVGFA++MAYAEGYK FQ KFSP+VV+RALTL   +  L  VLA PYSMGLFHAS+KR+IVSWT++  V+GLV+AV+ L +P+RSI+D GVVAGLSWG+ +I   + ++  G  P +D  LP
Sbjct:   94 MAKLAKITGGAA----PAVETSQKQSFSLSALWGVVGVVAMLSNAIRRLLPIALEPFKKTATPTAFTPLHWAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTLGPRSPLLHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVDAGVVAGLSWGALSIAGIYAQALRGHVPSIDPALP 284

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BLAST of jgi.p|Trimin1|353481 vs. uniprot
Match: A0A0M0JX49_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JX49_9EUKA)

HSP 1 Score: 195 bits (496), Expect = 2.260e-57
Identity = 95/168 (56.55%), Postives = 122/168 (72.62%), Query Frame = 1

Query:  295 RSSFGLASAWGVLSVLAILGNAVKRLAPIAMQPFKSGDLTRAHWGMYVGFAVLMAYAEGYKAFQKKFSPMVVQRALTLDKSAGPLRLVLAGPYSMGLFHASRKRKIVSWTLSFAVLGLVQAVRKLPYPWRSIIDGGVVAGLSWGSGAIVYYWVRSWFGTDPGVDAQLP 798
            R++ G+A AWGV   L IL +A+KRLAPIAMQPF   DL+   WG Y G   + AY EGY AFQKKFSP+VV+RA+TL +S  P+ + LA  YSMGL HA++KRKIVSW++S +V  +V  V++LPYPWRSI+D GV  GL+WG+ +IV  + R+  GT PGVD  LP
Sbjct:   51 RNAHGIAVAWGVCGFLGILASAIKRLAPIAMQPFLQRDLSWLQWGFYGGSMGIFAYVEGYGAFQKKFSPLVVERAMTLKQSTSPVHIALAPFYSMGLMHATKKRKIVSWSVSMSVAMVVGIVKRLPYPWRSIVDAGVCTGLAWGAVSIVIIYARALAGTPPGVDPCLP 218

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BLAST of jgi.p|Trimin1|353481 vs. uniprot
Match: A0A8J6CDI7_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDI7_DIALT)

HSP 1 Score: 187 bits (475), Expect = 2.840e-54
Identity = 93/165 (56.36%), Postives = 116/165 (70.30%), Query Frame = 1

Query:  313 ASAWGVLSVLAILGNAVKRLAPIAMQPFKSGDLTRAHWGMYVGFAVLMAYAEGYKAFQKKFSPMVVQRALTLDKSAG---PLRLVLAGPYSMGLFHASRKRKIVSWTLSFAVLGLVQAVRKLPYPWRSIIDGGVVAGLSWGSGAIVYYWVRSWFGTDPGVDAQLP 798
            AS WGV+ V+AIL NA+ RLAPIA +PF+ G L   HW  Y       AY EGYKAFQ KFSP+VV RA TL    G    LR VLA  YSMGLFHA+RKRK++SWT+S AV+ +V  V++LPYPWRSI+D GVVAGL+WG  +I + +V++  G+ P V  +LP
Sbjct:   52 ASHWGVVGVMAILANAIGRLAPIAAEPFRYGGLAPLHWASYAATIAAFAYVEGYKAFQLKFSPLVVSRAFTLGPQGGRATALRSVLAPFYSMGLFHATRKRKVISWTISLAVIVIVGVVKRLPYPWRSIVDAGVVAGLTWGVTSIGWIYVKAIGGSLPNVSTELP 216

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BLAST of jgi.p|Trimin1|353481 vs. uniprot
Match: A0A7S2WJT5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJT5_9STRA)

HSP 1 Score: 189 bits (480), Expect = 6.690e-54
Identity = 98/174 (56.32%), Postives = 120/174 (68.97%), Query Frame = 1

Query:  310 LASAWGVLSVLAILGNAVKRLAPIAMQPFKS-GDLTRAHWGMYVGFAVLMAYAEGYKAFQKKFSPMVVQRALTLDKS--AGP---LRLVLAGPYSMGLFHASRKRKIVSWTLSFAVLGLVQAVRKLPYPWRSIIDGGVVAGLSWGSGAIVYYWVRSWF-GTDPGVDAQLPLEEP 810
            +AS WG L V+ IL N +KRL P+A+QPF S GDL+  HW  Y  + V M Y EGYKAFQ KF P+VV RA TL++    GP   LR  LA  YSMGLFHAS+KR IVSW+    +  +V  V++LPYPWRSIIDGGVV GLSWG+ +I Y ++R  F G  P VD QLP++EP
Sbjct:  125 IASTWGALGVMYILANPIKRLLPVALQPFASPGDLSAMHWVAYALWCVFMGYTEGYKAFQLKFCPLVVSRAATLERQDCRGPGWWLRAALAPLYSMGLFHASKKRLIVSWSFVIGISAIVATVKRLPYPWRSIIDGGVVFGLSWGAASIAYLYLRKIFTGQIPEVDPQLPVKEP 298

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BLAST of jgi.p|Trimin1|353481 vs. uniprot
Match: A0A7S3SW48_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SW48_EMIHU)

HSP 1 Score: 185 bits (469), Expect = 4.650e-53
Identity = 92/170 (54.12%), Postives = 114/170 (67.06%), Query Frame = 1

Query:  307 GLASAWGVLSVLAILGNAVKRLAPIAMQPFKSGDLTRAHWGMYVGFAVLMAYAEGYKAFQKKFSPMVVQRALTLDKSAGP---LRLVLAGPYSMGLFHASRKRKIVSWTLSFAVLGLVQAVRKLPYPWRSIIDGGVVAGLSWGSGAIVYYWVRSWFGTDPGVDAQLPLEE 807
            GL +AWGV   L IL  A+ RLAPIAMQP    D+T   WG+Y G     AY EGYKAFQ KFSP+VVQRA+TL   + P   L  VLA  YSMGLFHAS+KRK VSW++S  V  ++  V++LPYPWRS++D GV  GL WG  +I   ++R+  G  PGVD +LP E+
Sbjct:   72 GLRTAWGVCGFLGILAQAIGRLAPIAMQPILQRDITMLQWGLYGGTMAFFAYTEGYKAFQCKFSPLVVQRAMTLSTRSPPPPLLHSVLAPFYSMGLFHASKKRKTVSWSISLGVACIIGLVKRLPYPWRSVVDAGVCTGLLWGGTSIGVIYLRALAGKSPGVDPELPKED 241

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BLAST of jgi.p|Trimin1|353481 vs. uniprot
Match: A0A7R9U4X8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4X8_9STRA)

HSP 1 Score: 180 bits (457), Expect = 6.850e-51
Identity = 85/166 (51.20%), Postives = 110/166 (66.27%), Query Frame = 1

Query:  307 GLASAWGVLSVLAILGNAVKRLAPIAMQPFKSGDLTRAHWGMYVGFAVLMAYAEGYKAFQKKFSPMVVQRALTLDKSAGPLRLVLAGPYSMGLFHASRKRKIVSWTLSFAVLGLVQAVRKLPYPWRSIIDGGVVAGLSWGSGAIVYYWVRSWFGTDPGVDAQLPLE 804
            G+A+ WGVL V  +L N ++RL PIA++PF+ GD     W  Y GFAV MAYAEG K FQKKF P VV+RA  L  S  PL  + A  + MGLFHAS+KRKI+SW+L   V G++Q  ++L YPW +I+D G V GL WG  ++   +VRS FG  P + A+LP E
Sbjct:  104 GVAATWGVLGVFYVLLNGLRRLVPIAVEPFQRGDFGLGLWAAYAGFAVFMAYAEGVKGFQKKFCPFVVRRAQLLKGSTNPLHCIFAPFFCMGLFHASKKRKILSWSLLIGVFGIIQVAKRLAYPWNAIVDAGAVVGLGWGCISLGATYVRSLFGQVPSISAELPSE 269

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BLAST of jgi.p|Trimin1|353481 vs. uniprot
Match: D8LTY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY0_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 1.570e-49
Identity = 98/184 (53.26%), Postives = 119/184 (64.67%), Query Frame = 1

Query:  304 FGLASAWGVLSVLAILGNAVKRLAPIAMQPFKSGDLTRAHWGMYVGFAVLMAYAEGYKAFQKKFSPMVVQRALTLDKSA----------------GPLRLVLAGPYSMGLFHASRKRKIVSWTLSFAVLGLVQAVRKLPYPWRSIIDGGVVAGLSWGSGAIVYYWVRSWFGTDPGVDAQLPLEE 807
            FG+ASAWGV+SV+ IL NAVKRLAPIAMQPF    L                       FQKKFSP+VV+RALTLD++A                GPLRL+LAGPYSMGLFHA++KRK VSW+L+  VL LVQ V++LPYPWRSI+D GVV GLS+G+ +I   W R+  G  P +D  LP E+
Sbjct:  149 FGVASAWGVVSVVFILMNAVKRLAPIAMQPFSRASL----------------------GFQKKFSPLVVKRALTLDQAAAAVPAADGGQKRRRRAGPLRLLLAGPYSMGLFHATKKRKTVSWSLTAGVLCLVQMVKRLPYPWRSIVDAGVVVGLSYGTLSICVIWARAILGKAPSIDPALPEEK 310

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353481 vs. uniprot

BLAST of jgi.p|Trimin1|353481 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CIU2_9STRA	1.940e-182	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835ZF77_9STRA	1.280e-86	67.65	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CMT5_9STRA	9.550e-62	53.23	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
W7TVP9_9STRA	8.030e-58	52.82	Uncharacterized protein n=2 Tax=Monodopsidaceae Ta...	[more]
A0A0M0JX49_9EUKA	2.260e-57	56.55	Uncharacterized protein n=1 Tax=Chrysochromulina t...	[more]
A0A8J6CDI7_DIALT	2.840e-54	56.36	Uncharacterized protein n=2 Tax=Diacronema lutheri...	[more]
A0A7S2WJT5_9STRA	6.690e-54	56.32	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S3SW48_EMIHU	4.650e-53	54.12	Hypothetical protein n=2 Tax=Emiliania huxleyi Tax...	[more]
A0A7R9U4X8_9STRA	6.850e-51	51.20	Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi...	[more]
D8LTY0_ECTSI	1.570e-49	53.26	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_166	contig	Contig_166:76156..79393 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|353481\|estExt_Genemark1.C_Ctg_1660011
Max annot lvl	2759\|Eukaryota
EggNOG OGs	2BRVF@1\|root,2S1X8@2759\|Eukaryota
Evalue	6.37e-55
Seed ortholog	2903.EOD04443
Hectar predicted targeting category	chloroplast
TranscriptId	353803
Track	FilteredModels1
ProteinId	353481

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353481	gene_13295	Tribonema minus UTEX_B_3156	gene	Contig_166 76156..79393 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353481	Trimin1\|353481\|estExt_Genemark1.C_Ctg_1660011	Tribonema minus UTEX_B_3156	polypeptide	Contig_166 76174..79094 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_13295_1	exon_13295_1	Tribonema minus UTEX_B_3156	exon	Contig_166 76156..76333 +
exon_13295_2	exon_13295_2	Tribonema minus UTEX_B_3156	exon	Contig_166 76540..76760 +
exon_13295_3	exon_13295_3	Tribonema minus UTEX_B_3156	exon	Contig_166 77318..77452 +
exon_13295_4	exon_13295_4	Tribonema minus UTEX_B_3156	exon	Contig_166 77832..77951 +
exon_13295_5	exon_13295_5	Tribonema minus UTEX_B_3156	exon	Contig_166 78495..78644 +
exon_13295_6	exon_13295_6	Tribonema minus UTEX_B_3156	exon	Contig_166 79074..79393 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_13295	UTR5_13295	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_166 76156..76173 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_13295	CDS_13295	Tribonema minus UTEX_B_3156	CDS	Contig_166 76174..76333 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_13295	UTR3_13295	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_166 79095..79393 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_166:76156..79393+
coding sequence from alignment at Contig_166:76156..79393+

spliced messenger RNA

>mRNA_13295 ID=mRNA_13295|Name=jgi.p|Trimin1|353481|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1124bp|location=Sequence derived from alignment at Contig_166:76156..79393+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTAAGCGGCGCCACAGCCATGCACGTTGCCTCCGTCTGTGTCAACTTTGC
TTTGATGAGCAGCCTGCTGCCAGCGTCCGCCTTTTCTGCTGCTGCGGCCA
TGCCTCCGTCCAGCCCCACTACAAAGTCCGTGTGGATGCAGTCAGCATCA
TCAGCTCCCCTACACCGAGCCTCGCCAGCGCTACACGGAGTGCGAGCAGG
CTGCAGCGCGGAGCGGCGCTCGCGTTTGGCGACGGCGCTTCGCATGTCTG
GAGGCGCTGCTGCTGACGATAACACTGTGGCTAGCACAAGTGGCAGGAGT
TCATTTGGCCTGGCAAGTGCTTGGGGAGTCCTTTCAGTGCTGGCAATACT
GGGGAATGCGGTGAAGCGGCTGGCGCCGATTGCAATGCAGCCCTTCAAGT
CTGGCGACCTGACGAGGGCGCACTGGGGTATGTATGTAGGGTTTGCTGTG
CTTATGGCGTACGCAGAAGGGTACAAGGCATTCCAGAAGAAATTCAGCCC
CATGGTGGTGCAGCGGGCTCTCACGCTTGACAAGAGTGCCGGCCCTCTCC
GGCTGGTGCTCGCTGGCCCTTACAGCATGGGGCTGTTCCATGCCTCGCGC
AAGCGCAAGATTGTCAGCTGGACACTGTCATTTGCCGTCTTGGGCCTGGT
GCAGGCTGTGAGGAAGCTGCCATATCCCTGGCGGAGCATCATTGATGGAG
GCGTGGTGGCAGGGCTGTCCTGGGGATCTGGTGCCATTGTCTACTACTGG
GTGAGGTCATGGTTTGGGACAGACCCGGGCGTGGATGCGCAGTTGCCGCT
GGAGGAGCCTGCCAAGACGGAATAGGAGCGTTACCAGGGGGCACCATGGC
ACCGGCACTGCCTTGCGCAAGTGAAGAGGCCTCCAAGCGCAGAGGGCTCC
AAGTGCAGAGGGCTCCAGTCAGCCATGTGGCATCATCGGCTTTGCGACAA
CACTTGATGAGGTTGCATCATGGCTTCATGTCGTACATTATGAATGCGGC
ACAAGGGGAAACTGTGCATGTAGGCTGCGCGCACATGCTCTTTTTTTGTT
GTTGGCGACGCAAGCGTCGCCAGTACATAGAAGGGGAGTTGATGGATCAC
ATACCATACTGATGCTCTTGCACA

protein sequence of jgi.p|Trimin1|353481

>Trimin1|353481|estExt_Genemark1.C_Ctg_1660011 ID=Trimin1|353481|estExt_Genemark1.C_Ctg_1660011|Name=jgi.p|Trimin1|353481|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=269bp
MHVASVCVNFALMSSLLPASAFSAAAAMPPSSPTTKSVWMQSASSAPLHR
ASPALHGVRAGCSAERRSRLATALRMSGGAAADDNTVASTSGRSSFGLAS
AWGVLSVLAILGNAVKRLAPIAMQPFKSGDLTRAHWGMYVGFAVLMAYAE
GYKAFQKKFSPMVVQRALTLDKSAGPLRLVLAGPYSMGLFHASRKRKIVS
WTLSFAVLGLVQAVRKLPYPWRSIIDGGVVAGLSWGSGAIVYYWVRSWFG
TDPGVDAQLPLEEPAKTE*

mRNA from alignment at Contig_166:76156..79393+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_13295 ID=mRNA_13295|Name=jgi.p|Trimin1|353481|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3238bp|location=Sequence derived from alignment at Contig_166:76156..79393+ (Tribonema minus UTEX_B_3156 )
GTAAGCGGCGCCACAGCCATGCACGTTGCCTCCGTCTGTGTCAACTTTGC
TTTGATGAGCAGCCTGCTGCCAGCGTCCGCCTTTTCTGCTGCTGCGGCCA
TGCCTCCGTCCAGCCCCACTACAAAGTCCGTGTGGATGCAGTCAGCATCA
TCAGCTCCCCTACACCGAGCCTCGCCAGGTAAGAAGCCATCCGGAAGGAT
AATGAACTCGCAAAATACCTTTCCAATGGTATAGACAACTTAAGGTGCTG
CTGCCCTCCGGATCCAAATCGAACTTCAATACTGACGCAAATCCACGGGA
TTGTGCTGCCGGGTCCGCTTACACACCTGCATCTTAAATTGGTGCTGCCC
GTGCATTTCAATCTTCGTCGCCCCTTCGCTGCAGCGCTACACGGAGTGCG
AGCAGGCTGCAGCGCGGAGCGGCGCTCGCGTTTGGCGACGGCGCTTCGCA
TGTCTGGAGGCGCTGCTGCTGACGATAACACTGTGGCTAGCACAAGTGGC
AGGAGTTCATTTGGCCTGGCAAGTGCTTGGGGAGTCCTTTCAGTGCTGGC
AATACTGGGGAATGCGGTGAAGCGGCTGGCGCCGATTGCAATGCAGCCCT
TCAAGGTGAGAACACAGGCACTATGGATCGTGGCATGGACAACAGTCAGC
GCGGACAGCAGGACAGCAACTGTGGATTTAACTCTGGATTCTCATGGCAG
CTTTTGTCTGCGTGCTGTGGCAATTGCACAGTGCTGCGAGCTCACGCAGC
ATTTCGCAACACAGTGACGGCATGATCAGATGCCATTAACCCTCCGACCC
TGAACATGACATCATGTTGACTGAATCATGCATCTCCATGCATGTACTTG
ATTCTCATTTATGATGACTGGCACAAGCAACCATACCATACCATGCTGTG
GTATGCTCATGTGAGGCATTCAACGGCTTCTGCATCATGGGCGACCATTG
CACATCAACCTTCGCACACTGAGTCCGAGTCCCTGTACTTGTGACCCGAT
GGCATATCTGTGTTTCACAATAGTGATATCACCTTTCAGCGATGGCAGTT
TTTGATCGTGCAGGCATGCCTGTGTACCTCAAAACTGTTACCATTGCAGT
ATTGTTTGCAGCACACGTGCTAACCGCACCGCTCTGTGTTTATGTACTGA
CTGTCATCGCAGTCTGGCGACCTGACGAGGGCGCACTGGGGTATGTATGT
AGGGTTTGCTGTGCTTATGGCGTACGCAGAAGGGTACAAGGCATTCCAGA
AGAAATTCAGCCCCATGGTGGTGCAGCGGGCTCTCACGCTTGACAAGGTC
AGTCAAATTCCTCTTGGCTGGCTTTTTCTTCTGTGCTCAAGCATTTCTCA
TCCATGCTGTGCTGTCTTCAGCGCTTGAACAACAAGTCTAACAGAGTACA
AGCAATTGATGAAGCAAGCGCTGCAATGCTGAGCCATTTAAGAGCTGTGC
TAGCATGGGCCATTGCCGAGCTTTGCAATGGCTGTCACTGAGACCCATTC
TTGGGCGGCTTGCTGCTGTCTGATCACTTGAAGCACAGCCCACTGCAGTG
GATGCCTGTCTCTGGTGTAGATTCTTGCTGACCTTCCAAACCGTCATCAC
TGGTGTGGCACCCGTAACGTGCATTGCACTTCTGCTGCTGTTATTGGTGT
TGGGGTGTTGTTGTTGCTTCATTCAGAGTGCCGGCCCTCTCCGGCTGGTG
CTCGCTGGCCCTTACAGCATGGGGCTGTTCCATGCCTCGCGCAAGCGCAA
GATTGTCAGCTGGACACTGTCATTTGCCGTCTTGGGCCTGGTGCAGGTGA
GGCAAAGCACCACCTGTGTAGGTGAAGGGTTGTTGACGCTGTGTATTTCT
TTCTTTGAAGTACGCAAGTCCATCAGTTTGACCGTGCTACAGCTGGCGGG
AAAGCTCGTGGAGATTGATAGCCTATCAGAGCATTGTGGACTTGACTGCA
ATTCATCTGCTATTTGATGTGCTAGAGCTGCACTCGCAGATGCCTTGTGT
CATTCAGGTGCAATGCGGCTCTGTCTCTGTCTGCTGTGATGAACTTTTGA
AGTATCAGCAATGGTTGTCGCAGGCGGCACTGTGGAAATGGGCCCTGCCA
GTAGGGAGCCAATTCACTTGTATTGCACGCAATGATTGCTGCCATAGTGT
ATCATCGCACAGCGCAGGTCTACTTCAGTGCAAGCGAGACCAATTAGTAC
CATCAAGTCATTCACTACACAAGTTGTGACTTTGTTTTGTGCAACAGTGA
CTCAATCTGGCCTCGGCAGGAGCACCTCTCCTCGACTCTCATCGACGCTG
CTGCTCCTGTCTGCTGTTGCGTCTTGCTCTTCACTCTAGGCTGTGAGGAA
GCTGCCATATCCCTGGCGGAGCATCATTGATGGAGGCGTGGTGGCAGGGC
TGTCCTGGGGATCTGGTGCCATTGTCTACTACTGGGTGAGGTCATGGTTT
GGGACAGACCCGGGCGTGGATGCGCAGTTGCCGCTGGAGGTGAGCTTCAA
CTTGAAGTTGTGCAACTTCATCAAAAATAGTCAGGTGCCACTGACAAACC
GTCATGGCTGCGATGTTTCAAAATCAGTAGTGGTGGCCCAAGTGGTTGCG
TGCAACTGTTTCAAGGATAAGGTCATTTGTGTTGGTGGCTTGCATGCCAG
AATCCTGTGCACGTGGTCGGCAATGGCATCAGACAAGTGGGCCAATATGC
TTTGTTGCAAGAAATGTATGACCGACACACCTTGGTATCCATTTGATTGT
GACCATGTTGAAGTATAACAGAGCCATGTACATAGTTGTCATAGTATCCG
CTGGTGTGCAGCACGGGTAGAGCGCAATTGAACATGCTAGAGTTGTTGCT
TATGGGAAACATGACTTATCTGGACCAGGCTAATATGCAACAACATTGGT
CATGCTCACTGGCTGCAGGAGCCTGCCAAGACGGAATAGGAGCGTTACCA
GGGGGCACCATGGCACCGGCACTGCCTTGCGCAAGTGAAGAGGCCTCCAA
GCGCAGAGGGCTCCAAGTGCAGAGGGCTCCAGTCAGCCATGTGGCATCAT
CGGCTTTGCGACAACACTTGATGAGGTTGCATCATGGCTTCATGTCGTAC
ATTATGAATGCGGCACAAGGGGAAACTGTGCATGTAGGCTGCGCGCACAT
GCTCTTTTTTTGTTGTTGGCGACGCAAGCGTCGCCAGTACATAGAAGGGG
AGTTGATGGATCACATACCATACTGATGCTCTTGCACA

Coding sequence (CDS) from alignment at Contig_166:76156..79393+

>mRNA_13295 ID=mRNA_13295|Name=jgi.p|Trimin1|353481|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=807bp|location=Sequence derived from alignment at Contig_166:76156..79393+ (Tribonema minus UTEX_B_3156 )
ATGCACGTTGCCTCCGTCTGTGTCAACTTTGCTTTGATGAGCAGCCTGCT
GCCAGCGTCCGCCTTTTCTGCTGCTGCGGCCATGCCTCCGTCCAGCCCCA
CTACAAAGTCCGTGTGGATGCAGTCAGCATCATCAGCTCCCCTACACCGA
GCCTCGCCAGCGCTACACGGAGTGCGAGCAGGCTGCAGCGCGGAGCGGCG
CTCGCGTTTGGCGACGGCGCTTCGCATGTCTGGAGGCGCTGCTGCTGACG
ATAACACTGTGGCTAGCACAAGTGGCAGGAGTTCATTTGGCCTGGCAAGT
GCTTGGGGAGTCCTTTCAGTGCTGGCAATACTGGGGAATGCGGTGAAGCG
GCTGGCGCCGATTGCAATGCAGCCCTTCAAGTCTGGCGACCTGACGAGGG
CGCACTGGGGTATGTATGTAGGGTTTGCTGTGCTTATGGCGTACGCAGAA
GGGTACAAGGCATTCCAGAAGAAATTCAGCCCCATGGTGGTGCAGCGGGC
TCTCACGCTTGACAAGAGTGCCGGCCCTCTCCGGCTGGTGCTCGCTGGCC
CTTACAGCATGGGGCTGTTCCATGCCTCGCGCAAGCGCAAGATTGTCAGC
TGGACACTGTCATTTGCCGTCTTGGGCCTGGTGCAGGCTGTGAGGAAGCT
GCCATATCCCTGGCGGAGCATCATTGATGGAGGCGTGGTGGCAGGGCTGT
CCTGGGGATCTGGTGCCATTGTCTACTACTGGGTGAGGTCATGGTTTGGG
ACAGACCCGGGCGTGGATGCGCAGTTGCCGCTGGAGGAGCCTGCCAAGAC
GGAATAG