Trimin1|8833|CE8832_237 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|8833
Unique Name	Trimin1\|8833\|CE8832_237
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	282

Homology

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BLAST of jgi.p|Trimin1|8833 vs. uniprot
Match: A0A835ZGC4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC4_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.230e-27
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0

Query:    1 MKCTAVAFAALLAVASANSGANLNKWVAIRGGGWGNDVQQGADEASRGVKNAGRXXXXXXXXXXXXXXXXXXXXXXXXXXKFFGAGDKARD 91
            MKCTAVAFAALLAVASANSGANLNKWVAIRGGGWGNDVQQGADEASRGVKNAGRXXXXXXXXXXXXXXXXXXXXXXXXXXKFFGAGDKARD
Sbjct:    1 MKCTAVAFAALLAVASANSGANLNKWVAIRGGGWGNDVQQGADEASRGVKNAGRXXXXXXXXXXXXXXXXXXXXXXXXXXKFFGAGDKARD 91

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|8833 vs. uniprot

BLAST of jgi.p|Trimin1|8833 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZGC4_9STRA	2.230e-27	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.700	Helix hairpin bin	coord: 105..184 e-value: 3.7E-6 score: 29.2 coord: 185..274 e-value: 4.2E-5 score: 25.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..218
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..254
None	No IPR available	PANTHER	PTHR47372	DAUER UP-REGULATED-RELATED	coord: 36..173
None	No IPR available	PANTHER	PTHR47372	DAUER UP-REGULATED-RELATED	coord: 153..268
None	No IPR available	PANTHER	PTHR47372:SF11	DAUER UP-REGULATED-RELATED	coord: 36..173
None	No IPR available	PANTHER	PTHR47372:SF11	DAUER UP-REGULATED-RELATED	coord: 153..268

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_112	contig	Contig_112:342610..344436 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|8833	mRNA_15530	Tribonema minus UTEX_B_3156	mRNA	Contig_112 342552..344512 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|8833|CE8832_237 ID=Trimin1|8833|CE8832_237|Name=jgi.p|Trimin1|8833|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=282bp
MKCTAVAFAALLAVASANSGANLNKWVAIRGGGWGNDVQQGADEASRGVK
NAGRDASRNAKGLGRDIKSNADNAGQTLKQKFFGAGDKARDAGRSTRDSA
RGASRDAQRTADNAGRNAQSWADDAGSSTRNAARNAGDSIKDVTRGARDN
LGDAGHAVAENARSAGRNVRDGAGNIGDKARDVGRSAKDTITGNANAAGD
KARDTGRDAKHNARNAGDSAKHQARNVGDSARDAGRNIKHSASNTASNVQ
DGVEDVAHKGQNAFSRAVGGIRDTFRNIFNA*