Trimin1|85478|CE85477_542 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|85478
Unique Name	Trimin1\|85478\|CE85477_542
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	234

Homology

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BLAST of jgi.p|Trimin1|85478 vs. uniprot
Match: A0A835YVH3_9STRA (Trigger_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH3_9STRA)

HSP 1 Score: 355 bits (911), Expect = 3.650e-122
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0

Query:    1 MAGTMTQLALLVVALLAPSSLAFVPSALSIGSGSSRHAVRMTAAVAGEPLAHAMDGVKATRLEAVDEAAGIYQYEFEIEIQGDVTQNIYNGIEKELRKKAAFPGFRKGQIPPFARKQVITFSVEEAVNESLISALAAHGLEKLEGKEGNAELTQQVEDLVAAFKPGKTLSINAKVNAKDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAEAAEDFYSWQTVRRR 233
            MAGTMTQLALLVVALLAPSSLAFVPSALSIGSGSSRHAVRMTAAVAGEPLAHAMDGVKATRLEAVDEAAGIYQYEFEIEIQGDVTQNIYNGIEKELRKKAAFPGFRKGQIPPFARKQVITFSVEEAVNESLISALAAHGLEKLEGKEGNAELTQQVEDLVAAFKPGKTLSINAKVNAKDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAEAAEDFYSWQTVRRR
Sbjct:    1 MAGTMTQLALLVVALLAPSSLAFVPSALSIGSGSSRHAVRMTAAVAGEPLAHAMDGVKATRLEAVDEAAGIYQYEFEIEIQGDVTQNIYNGIEKELRKKAAFPGFRKGQIPPFARKQVITFSVEEAVNESLISALAAHGLEKLEGKEGNAELTQQVEDLVAAFKPGKTLSINAKVNAKDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAEAAEDFYSWQTVRRR 233

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BLAST of jgi.p|Trimin1|85478 vs. uniprot
Match: D7FPQ2_ECTSI (Trigger_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ2_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 2.340e-25
Identity = 56/155 (36.13%), Postives = 92/155 (59.35%), Query Frame = 0

Query:   30 IGSGSSRHAVRMTAA------VAGEPLAHAMDGVKATRLEAVDEAAGIYQYEFEIEIQGDVTQNIYNGIEKELRKKAAFPGFRKGQIPPFARKQVITFSVEEAVNESLISALAAHGLEKLEGKEGNAELTQQVEDLVAAFKPGKTLSINAKVNAK 178
            +G+G + H+ R  +       +  E L      +K  +LE VDEA G+++YEF+IE  G  TQ++++ I +E++ K+ FPG+RKG+IPP    +   + +EE +NE L +ALA + L   +G    A++   +ED++  FKPGK LS +   +AK
Sbjct:   26 VGTGINLHSTRWNSCGTRGMRMEVEELEQLNPAIKGKKLEIVDEAEGVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGYRKGEIPPRLMPEATKYVIEEVMNEGLQTALATYNLVGAKGDGSEADIKNDIEDMLKVFKPGKPLSFSCTFDAK 180

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BLAST of jgi.p|Trimin1|85478 vs. uniprot
Match: A0A1Z5JG88_FISSO (Trigger_N domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JG88_FISSO)

HSP 1 Score: 90.1 bits (222), Expect = 1.510e-18
Identity = 40/105 (38.10%), Postives = 68/105 (64.76%), Query Frame = 0

Query:   72 YQYEFEIEIQGDVTQNIYNGIEKELRKKAAFPGFRKGQIPPFARKQVITFSVEEAVNESLISALAAHGLEKLEGKEGNAELTQQVEDLVAAFKPGKTLSINAKVN 176
            YQ+     + G++ ++ +  + K  +KKA FPGFRKGQ+PP+A  Q+  FS++EA+ +++ +A+ AHGL+ L G +G  E+ + VED+V  +K G  +   A +N
Sbjct:   74 YQFWMTATVDGNMIKDNHTELLKNAKKKANFPGFRKGQVPPYAMPQITQFSIQEAIIKTVEAAVDAHGLKALSGSDGQVEVKENVEDMVKGYKLGDPIQFTAVLN 178

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BLAST of jgi.p|Trimin1|85478 vs. uniprot
Match: A0A7S2CNK0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CNK0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.200e-18
Identity = 43/108 (39.81%), Postives = 71/108 (65.74%), Query Frame = 0

Query:   72 YQYEFEIEIQGDVTQNIYNGIEKELRKKAAFPGFRKGQIPPFARKQVITFSVEEAVNESLISALAAHGLEKLEGKEGNAELTQQVEDLVAAFKPGKTLSINAKVNAKD 179
            ++Y  ++ I G+ T+     IEK+ +K A FPGFRKGQIPP+A+ ++ TF VE A+N+ ++ A+ +  L  L+G++ NAE+ + V +L+  +K G  LS  A  +AK+
Sbjct:   86 HKYFLKMTIPGETTKEYMKEIEKDSKKNADFPGFRKGQIPPWAKPKLKTFCVETALNDGIMDAMESAKLTALDGEDKNAEVLEDVAELIRGYKIGTPLSFTASFSAKE 193

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BLAST of jgi.p|Trimin1|85478 vs. uniprot
Match: K0R1B8_THAOC (Trigger_N domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R1B8_THAOC)

HSP 1 Score: 89.7 bits (221), Expect = 2.200e-18
Identity = 45/133 (33.83%), Postives = 77/133 (57.89%), Query Frame = 0

Query:   47 GEPLAHAMDGVKATRLEAVDEAA-GIYQYEFEIEIQGDVTQNIYNGIEKELRKKAAFPGFRKGQIPPFARKQVITFSVEEAVNESLISALAAHGLEKLEGKEGNAELTQQVEDLVAAFKPGKTLSINAKVNAK 178
            G+ L      ++ +R++ + E   G+Y +    +  G   +++    EKE  +KA FPGFRKGQIPP+A  Q+ TF+++EA+ ++   +L A+GLE L G +G+  + ++VED+V  +K G  +   A    K
Sbjct:   48 GDELIRVSSSMEGSRMKNMGEVGDGVYNFWLTGKADGGKIKSLIQQTEKEASRKANFPGFRKGQIPPYAMPQIRTFAIQEALIKTCEESLEAYGLESLPGSDGSVTINEKVEDIVKGYKVGSDVEFTATYKGK 180

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BLAST of jgi.p|Trimin1|85478 vs. uniprot
Match: A0A448ZF46_9STRA (Trigger_N domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZF46_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.220e-17
Identity = 45/113 (39.82%), Postives = 70/113 (61.95%), Query Frame = 0

Query:   66 DEAAG-IYQYEFEIEIQGDVTQNIYNGIEKELRKKAAFPGFRKGQIPPFARKQVITFSVEEAVNESLISALAAHGLEKLEGKEGNAELTQQVEDLVAAFKPGKTLSINAKVNA 177
            DE  G I +Y    +++G + + I+  + KE  KKA FPGFRKGQ+PPFA  Q+  F+V+EA+ ++  SA+ A+GL+ + G +G  E+ + V ++  A+K G  L   A  NA
Sbjct:   81 DEDQGPINKYWLTAKVEGPLIKEIHQTVLKESAKKANFPGFRKGQVPPFAMPQIRGFAVQEAIVQTCQSAVDAYGLKSVSGSDGEVEVLEDVPEMAKAYKLGDDLEFTATFNA 193

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BLAST of jgi.p|Trimin1|85478 vs. uniprot
Match: A0A7S4ER47_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ER47_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.360e-17
Identity = 45/124 (36.29%), Postives = 73/124 (58.87%), Query Frame = 0

Query:   55 DGVKATRLEAVDEAAG-IYQYEFEIEIQGDVTQNIYNGIEKELRKKAAFPGFRKGQIPPFARKQVITFSVEEAVNESLISALAAHGLEKLEGKEGNAELTQQVEDLVAAFKPGKTLSINAKVNA 177
            +G+   R E   E  G I +Y    +++G + + I+  + KE  KKA FPGFRKGQ+PPFA  Q+  F+V+E++  +  SA+ A+GL+ + G +G  E+ + + ++  A+K G  L   A  NA
Sbjct:   69 EGLSGVRSEEDAETQGTINKYWLTAKVEGSLVREIHQTVLKESAKKANFPGFRKGQVPPFAMPQIRGFAVQESIVRTCQSAVDAYGLKSVSGSDGEVEVLEDIPEVAKAYKLGDDLEFTATFNA 192

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BLAST of jgi.p|Trimin1|85478 vs. uniprot
Match: A0A7S2VBM0_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VBM0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.170e-17
Identity = 41/125 (32.80%), Postives = 76/125 (60.80%), Query Frame = 0

Query:   60 TRLEAVDEAAGI-------YQYEFEIEIQGDVTQNIYNGIEKELRKKAAFPGFRKGQIPPFARKQVITFSVEEAVNESLISALAAHGLEKLEGKEGNAELTQQVEDLVAAFKPGKTLSINAKVNA 177
            +R++ ++E  G+       Y++    E+ G + + +   I K+  KKA FPGFRKGQ+PP+A  ++ TF+V+EA+ +++ + +  +GL++LEG +G  E+ + +ED+   +  G    I A +NA
Sbjct:   62 SRVKQMEELKGVKSDLGTPYEFWLTAEVDGTLVKEVRTTILKDASKKANFPGFRKGQVPPYALPKMTTFAVQEAIIKTVQAVVDCYGLKELEGDDGKVEVKEDLEDICKGYNVGDPFQITATINA 186

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BLAST of jgi.p|Trimin1|85478 vs. uniprot
Match: A0A7S1E1Y9_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E1Y9_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.750e-17
Identity = 42/124 (33.87%), Postives = 76/124 (61.29%), Query Frame = 0

Query:   60 TRLEAVDEAAG-------IYQYEFEIEIQGDVTQNIYNGIEKELRKKAAFPGFRKGQIPPFARKQVITFSVEEAVNESLISALAAHGLEKLEGKEGNAELTQQVEDLVAAFKPGKTLSINAKVN 176
            TR++ ++EA G       +Y++  +    GD+ +     + K+ +KKA FPGFRKGQ+PP+A  Q+  F+++E++ +++  A+AA+ L+ L G +G  E+ + VE+L   +K G +L   A +N
Sbjct:    3 TRVKKLEEADGLKSNDGPVYKFWLKSLASGDLIKEYKITLLKDAKKKANFPGFRKGQVPPYAMPQITGFAIQESLIKTVEQAVAAYALKSLPGSDGQVEILEDVEELCKGYKDGTSLEFTATLN 126

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BLAST of jgi.p|Trimin1|85478 vs. uniprot
Match: B5Y4V7_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y4V7_PHATC)

HSP 1 Score: 84.3 bits (207), Expect = 2.670e-16
Identity = 39/107 (36.45%), Postives = 67/107 (62.62%), Query Frame = 0

Query:   71 IYQYEFEIEIQGDVTQNIYNGIEKELRKKAAFPGFRKGQIPPFARKQVITFSVEEAVNESLISALAAHGLEKLEGKEGNAELTQQVEDLVAAFKPGKTLSINAKVNA 177
            +Y +    E++G + + I + I K+  KKA FPGFRKGQ+PP+A+ Q+  FSV+EA+ +++ +A+ + GL+ + G  G   + + VE +   +K G  ++  AK NA
Sbjct:   80 VYSFWMTAEVEGALIKEIRSQILKDAAKKANFPGFRKGQVPPYAQPQITGFSVQEAIIKTVEAAVNSFGLKSIPGSAGEINVNEDVEAISKGYKVGDNINFTAKFNA 186

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|85478 vs. uniprot

BLAST of jgi.p|Trimin1|85478 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 24


Match Name	E-value	Identity	Description
A0A835YVH3_9STRA	3.650e-122	100.00	Trigger_N domain-containing protein n=1 Tax=Tribon...	[more]
D7FPQ2_ECTSI	2.340e-25	36.13	Trigger_N domain-containing protein n=2 Tax=Ectoca...	[more]
A0A1Z5JG88_FISSO	1.510e-18	38.10	Trigger_N domain-containing protein n=2 Tax=Fistul...	[more]
A0A7S2CNK0_9STRA	2.200e-18	39.81	Hypothetical protein (Fragment) n=1 Tax=Dictyocha ...	[more]
K0R1B8_THAOC	2.200e-18	33.83	Trigger_N domain-containing protein n=1 Tax=Thalas...	[more]
A0A448ZF46_9STRA	2.220e-17	39.82	Trigger_N domain-containing protein n=1 Tax=Pseudo...	[more]
A0A7S4ER47_9STRA	2.360e-17	36.29	Hypothetical protein n=1 Tax=Pseudo-nitzschia aust...	[more]
A0A7S2VBM0_9STRA	3.170e-17	32.80	Hypothetical protein n=2 Tax=Amphiprora paludosa T...	[more]
A0A7S1E1Y9_9STRA	3.750e-17	33.87	Hypothetical protein n=2 Tax=Thalassionema nitzsch...	[more]
B5Y4V7_PHATC	2.670e-16	36.45	Predicted protein n=3 Tax=Phaeodactylum tricornutu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036611	Trigger factor ribosome-binding domain superfamily	GENE3D	3.30.70.1050		coord: 66..181 e-value: 1.2E-10 score: 43.5
IPR036611	Trigger factor ribosome-binding domain superfamily	SUPERFAMILY	102735	Trigger factor ribosome-binding domain	coord: 73..177
IPR008881	Trigger factor, ribosome-binding, bacterial	PFAM	PF05697	Trigger_N	coord: 73..200 e-value: 4.1E-10 score: 40.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..218

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_7	contig	Contig_7:57823..63633 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|85478	mRNA_2486	Tribonema minus UTEX_B_3156	mRNA	Contig_7 57742..63762 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|85478|CE85477_542 ID=Trimin1|85478|CE85477_542|Name=jgi.p|Trimin1|85478|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=234bp
MAGTMTQLALLVVALLAPSSLAFVPSALSIGSGSSRHAVRMTAAVAGEPL
AHAMDGVKATRLEAVDEAAGIYQYEFEIEIQGDVTQNIYNGIEKELRKKA
AFPGFRKGQIPPFARKQVITFSVEEAVNESLISALAAHGLEKLEGKEGNA
ELTQQVEDLVAAFKPGKTLSINAKVNAKDTAGAAATAASEVEAEAEVEEA
GEDAASSDADAGAAAAPAEAAEDFYSWQTVRRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036611	Trigger_fac_ribosome-bd_sf
IPR008881	Trigger_fac_ribosome-bd_bac