Trimin1|83528|CE83527_133 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|83528
Unique NameTrimin1|83528|CE83527_133
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length145
Homology
BLAST of jgi.p|Trimin1|83528 vs. uniprot
Match: A0A835YQF9_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQF9_9STRA)

HSP 1 Score: 288 bits (738), Expect = 1.060e-98
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query:    1 MNVLLLRQTKPAGCSICVRCLAIKTSKVPSLKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMPPPPGSWLDVDDPEDRRGRVGVGFPWQRPVAQEGRQ 144
            MNVLLLRQTKPAGCSICVRCLAIKTSKVPSLKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMPPPPGSWLDVDDPEDRRGRVGVGFPWQRPVAQEGRQ
Sbjct:    1 MNVLLLRQTKPAGCSICVRCLAIKTSKVPSLKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMPPPPGSWLDVDDPEDRRGRVGVGFPWQRPVAQEGRQ 144          
BLAST of jgi.p|Trimin1|83528 vs. uniprot
Match: A0A6H5JB99_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB99_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 9.660e-21
Identity = 47/106 (44.34%), Postives = 71/106 (66.98%), Query Frame = 0
Query:   31 LKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMPPPPGSWLDVDDPEDRRGRVGVGFPWQR 136
            LK+F+ + +VL  YR +LK ARA+ED+    +VA + R ++++   ETD LK++M++A+A  H++ +QG+             SWLD+ DPED+RGRVG GFPWQR
Sbjct:  113 LKEFMHRARVLELYRGILKRARALEDK----DVADEARRQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGGRGGGDSWLDIHDPEDKRGRVGEGFPWQR 214          
BLAST of jgi.p|Trimin1|83528 vs. uniprot
Match: D8LRC8_ECTSI (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC8_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 7.540e-19
Identity = 43/98 (43.88%), Postives = 66/98 (67.35%), Query Frame = 0
Query:   39 QVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMPPPPGSWLDVDDPEDRRGRVGVGFPWQR 136
            +VL  YR +LK ARA+ED+    +VA + R+++++   ETD LK++M++A+A  H++ +QG+             SWLD+ DPED+RGRVG GFPWQ+
Sbjct:    5 RVLELYRGILKRARALEDK----DVADEARKQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGGGGGDHSWLDIHDPEDKRGRVGKGFPWQQ 98          
BLAST of jgi.p|Trimin1|83528 vs. uniprot
Match: A0A482SDI4_9ARCH (LYR motif-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDI4_9ARCH)

HSP 1 Score: 73.6 bits (179), Expect = 4.010e-14
Identity = 39/105 (37.14%), Postives = 63/105 (60.00%), Query Frame = 0
Query:   31 LKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMP-PPPGSWLDVDDPEDRRGRVGVGFPW 134
            L+ F+R++QVL  YR L++ A  + D    +++ +Q+R  +R  AH  DSL ++ L+ E   ++  LQG   + S        GSW++ +DP D+RGRVG G+PW
Sbjct:   12 LRFFIRRKQVLSLYRNLIRNATRVHDESVQRDIISQIRTDFRRNAHVQDSLVIKSLIQEGNSNLKILQGMAYKDSKAHSIRAQGSWIEQEDPVDKRGRVGEGWPW 116          
BLAST of jgi.p|Trimin1|83528 vs. uniprot
Match: A0A7S4JFV4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JFV4_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.200e-14
Identity = 37/113 (32.74%), Postives = 61/113 (53.98%), Query Frame = 0
Query:   24 KTSKVPSLKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMPPPPGSWLDVDDPEDRRGRVGVGFPWQR 136
            +   +PSLK+FV K  V+  YR  L+    + D    Q    +VR  +R ++  TD + + M +A+  + ++ ++  V    P       SWL++DD ED+RGRVGV +PW +
Sbjct:   54 RLGNLPSLKEFVHKTAVVRQYRDFLRAVVMIPDETFRQSALDEVRRTFRQHSFMTDKIAIDMEVADGGRRLNQVRSMVGYVDPRSNDDSDSWLNIDDKEDKRGRVGVEWPWDQ 166          
BLAST of jgi.p|Trimin1|83528 vs. uniprot
Match: A0A7S0CAZ8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAZ8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.190e-7
Identity = 38/115 (33.04%), Postives = 52/115 (45.22%), Query Frame = 0
Query:   27 KVPSLKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMP-PPPGSWLDVDDPEDRRGRVGVGFPWQRPVAQ 140
            K+PSLKDF+ K  VL  YR  L+    + D  S +    ++ + YR       +    M   E  + +      V    P M      SWL++DD ED RGRVG  +PWQ    Q
Sbjct:   96 KIPSLKDFLYKASVLKQYRTFLRAVSCISDSMSKEHAKEEIIKGYRL---NVSTPSKSMAFKEGERKLQQFCSMVGYHHPSMNLNDDDSWLNIDDKEDERGRVGDLWPWQEKDGQ 207          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|83528 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YQF9_9STRA1.060e-98100.00Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A6H5JB99_9PHAE9.660e-2144.34Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D8LRC8_ECTSI7.540e-1943.88Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A482SDI4_9ARCH4.010e-1437.14LYR motif-containing protein n=1 Tax=archaeon TaxI... [more]
A0A7S4JFV4_9STRA7.200e-1432.74Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0CAZ8_9STRA3.190e-733.04Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR protein domainPFAMPF05347Complex1_LYRcoord: 38..90
e-value: 1.8E-9
score: 37.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..144
NoneNo IPR availableCDDcd20251Complex1_LYR_SFcoord: 40..90
e-value: 4.62774E-11
score: 52.9326

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_66contigContig_66:97193..98490 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|83528mRNA_9643Tribonema minus UTEX_B_3156 mRNAContig_66 97031..98495 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|83528|CE83527_133 ID=Trimin1|83528|CE83527_133|Name=jgi.p|Trimin1|83528|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=145bp
MNVLLLRQTKPAGCSICVRCLAIKTSKVPSLKDFVRKRQVLHSYRQLLKC
ARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGT
VARTSPDMPPPPGSWLDVDDPEDRRGRVGVGFPWQRPVAQEGRQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR_dom