mRNA_9643 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|83528
Unique NamemRNA_9643
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|83528 vs. uniprot
Match: A0A835YQF9_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQF9_9STRA)

HSP 1 Score: 289 bits (740), Expect = 4.810e-98
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 3 
Query:    6 MNVLLLRQTKPAGCSICVRCLAIKTSKVPSLKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMPPPPGSWLDVDDPEDRRGRVGVGFPWQRPVAQEGRQ 437
            MNVLLLRQTKPAGCSICVRCLAIKTSKVPSLKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMPPPPGSWLDVDDPEDRRGRVGVGFPWQRPVAQEGRQ
Sbjct:    1 MNVLLLRQTKPAGCSICVRCLAIKTSKVPSLKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMPPPPGSWLDVDDPEDRRGRVGVGFPWQRPVAQEGRQ 144
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BLAST of jgi.p|Trimin1|83528 vs. uniprot
Match: A0A6H5JB99_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB99_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 5.160e-20
Identity = 47/106 (44.34%), Postives = 71/106 (66.98%), Query Frame = 3 
Query:   96 LKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMPPPPGSWLDVDDPEDRRGRVGVGFPWQR 413
            LK+F+ + +VL  YR +LK ARA+ED+    +VA + R ++++   ETD LK++M++A+A  H++ +QG+             SWLD+ DPED+RGRVG GFPWQR
Sbjct:  113 LKEFMHRARVLELYRGILKRARALEDK----DVADEARRQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGGRGGGDSWLDIHDPEDKRGRVGEGFPWQR 214
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BLAST of jgi.p|Trimin1|83528 vs. uniprot
Match: D8LRC8_ECTSI (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC8_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.710e-18
Identity = 43/98 (43.88%), Postives = 66/98 (67.35%), Query Frame = 3 
Query:  120 QVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMPPPPGSWLDVDDPEDRRGRVGVGFPWQR 413
            +VL  YR +LK ARA+ED+    +VA + R+++++   ETD LK++M++A+A  H++ +QG+             SWLD+ DPED+RGRVG GFPWQ+
Sbjct:    5 RVLELYRGILKRARALEDK----DVADEARKQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGGGGGDHSWLDIHDPEDKRGRVGKGFPWQQ 98
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BLAST of jgi.p|Trimin1|83528 vs. uniprot
Match: A0A482SDI4_9ARCH (LYR motif-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDI4_9ARCH)

HSP 1 Score: 73.6 bits (179), Expect = 1.710e-13
Identity = 39/105 (37.14%), Postives = 63/105 (60.00%), Query Frame = 3 
Query:   96 LKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMP-PPPGSWLDVDDPEDRRGRVGVGFPW 407
            L+ F+R++QVL  YR L++ A  + D    +++ +Q+R  +R  AH  DSL ++ L+ E   ++  LQG   + S        GSW++ +DP D+RGRVG G+PW
Sbjct:   12 LRFFIRRKQVLSLYRNLIRNATRVHDESVQRDIISQIRTDFRRNAHVQDSLVIKSLIQEGNSNLKILQGMAYKDSKAHSIRAQGSWIEQEDPVDKRGRVGEGWPW 116
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BLAST of jgi.p|Trimin1|83528 vs. uniprot
Match: A0A7S4JFV4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JFV4_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.130e-13
Identity = 37/113 (32.74%), Postives = 61/113 (53.98%), Query Frame = 3 
Query:   75 KTSKVPSLKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMPPPPGSWLDVDDPEDRRGRVGVGFPWQR 413
            +   +PSLK+FV K  V+  YR  L+    + D    Q    +VR  +R ++  TD + + M +A+  + ++ ++  V    P       SWL++DD ED+RGRVGV +PW +
Sbjct:   54 RLGNLPSLKEFVHKTAVVRQYRDFLRAVVMIPDETFRQSALDEVRRTFRQHSFMTDKIAIDMEVADGGRRLNQVRSMVGYVDPRSNDDSDSWLNIDDKEDKRGRVGVEWPWDQ 166
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BLAST of jgi.p|Trimin1|83528 vs. uniprot
Match: A0A7S0CAZ8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAZ8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.460e-6
Identity = 38/115 (33.04%), Postives = 52/115 (45.22%), Query Frame = 3 
Query:   84 KVPSLKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVARTSPDMP-PPPGSWLDVDDPEDRRGRVGVGFPWQRPVAQ 425
            K+PSLKDF+ K  VL  YR  L+    + D  S +    ++ + YR       +    M   E  + +      V    P M      SWL++DD ED RGRVG  +PWQ    Q
Sbjct:   96 KIPSLKDFLYKASVLKQYRTFLRAVSCISDSMSKEHAKEEIIKGYRL---NVSTPSKSMAFKEGERKLQQFCSMVGYHHPSMNLNDDDSWLNIDDKEDERGRVGDLWPWQEKDGQ 207
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|83528 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YQF9_9STRA4.810e-98100.00Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A6H5JB99_9PHAE5.160e-2044.34Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D8LRC8_ECTSI3.710e-1843.88Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A482SDI4_9ARCH1.710e-1337.14LYR motif-containing protein n=1 Tax=archaeon TaxI... [more]
A0A7S4JFV4_9STRA3.130e-1332.74Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0CAZ8_9STRA1.460e-633.04Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_66contigContig_66:97031..98495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|83528|CE83527_133
Preferred nameLYRM2
DescriptionBelongs to the complex I LYR family
COG categoryS
Max annot lvl33208|Metazoa
EggNOG OGs2E10R@1|root,2S8DG@2759|Eukaryota,3A72Y@33154|Opisthokonta,3BT70@33208|Metazoa,3DAVG@33213|Bilateria
Evalue2.46e-07
Seed ortholog7668.SPU_000623-tr
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionComplex 1 LYR protein
Ec32 orthologEc-06_003010.1
TranscriptId83850
TrackFilteredModels1
ProteinId83528
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|83528gene_9643Tribonema minus UTEX_B_3156 geneContig_66 97031..98495 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9643_2exon_9643_2Tribonema minus UTEX_B_3156 exonContig_66 97031..97480 -
exon_9643_1exon_9643_1Tribonema minus UTEX_B_3156 exonContig_66 98344..98495 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9643UTR3_9643Tribonema minus UTEX_B_3156 three_prime_UTRContig_66 97031..97192 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9643CDS_9643Tribonema minus UTEX_B_3156 CDSContig_66 98344..98490 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_9643UTR5_9643Tribonema minus UTEX_B_3156 five_prime_UTRContig_66 98491..98495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|83528Trimin1|83528|CE83527_133Tribonema minus UTEX_B_3156 polypeptideContig_66 97193..98490 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9643 ID=mRNA_9643|Name=jgi.p|Trimin1|83528|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=602bp|location=Sequence derived from alignment at Contig_66:97031..98495- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTAACATGAACGTACTCTTGCTCAGACAAACGAAGCCTGCAGGCTGTTCC
ATCTGCGTTAGATGCCTGGCGATCAAAACCAGCAAGGTGCCGAGCCTGAA
GGACTTCGTGCGGAAGCGACAGGTCCTTCACTCTTACAGACAGCTGCTGA
AGTGCGCGCGCGCGATGGAAGATCGGCCATCGGGACAGGAGGTCGCGGCG
CAGGTGCGCGAGCGCTACCGCGCGTACGCCCACGAAACCGACTCGCTGAA
GCTGCGCATGCTGCTCGCCGAGGCAGCGCAGCACATAGATACTCTGCAGG
GCACAGTGGCGCGTACATCGCCGGACATGCCGCCGCCGCCGGGCAGCTGG
CTGGACGTAGATGACCCTGAGGACAGGAGGGGGCGCGTTGGGGTCGGGTT
CCCGTGGCAGAGGCCAGTAGCACAAGAAGGAAGGCAATGACACGTGGAGT
GACAATCGGTGTGCAGTGTGGCTCACTGCTGCGGTGCTGGCTGTCAGCAG
GCGTAGTGCGTGTGCAAGTGCATGGGGACATCCGTGTCGCTGTGCCATTT
GTGATTACGCTGCGGCAATGTATTTTATGTTCATGATGCGCGCCCGTGCA
TG
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protein sequence of jgi.p|Trimin1|83528

>Trimin1|83528|CE83527_133 ID=Trimin1|83528|CE83527_133|Name=jgi.p|Trimin1|83528|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=145bp
MNVLLLRQTKPAGCSICVRCLAIKTSKVPSLKDFVRKRQVLHSYRQLLKC
ARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGT
VARTSPDMPPPPGSWLDVDDPEDRRGRVGVGFPWQRPVAQEGRQ*
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mRNA from alignment at Contig_66:97031..98495-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9643 ID=mRNA_9643|Name=jgi.p|Trimin1|83528|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1465bp|location=Sequence derived from alignment at Contig_66:97031..98495- (Tribonema minus UTEX_B_3156 )
CTAACATGAACGTACTCTTGCTCAGACAAACGAAGCCTGCAGGCTGTTCC
ATCTGCGTTAGATGCCTGGCGATCAAAACCAGCAAGGTGCCGAGCCTGAA
GGACTTCGTGCGGAAGCGACAGGTCCTTCACTCTTACAGACAGCTGCTGA
AGGTAAGCCTCGATGAGCACATCCAGCTATGAATCAAGACGACTTTATGT
GACATTGGAGTTGCTCAATTGCCTCGGCTTGACATGTTTGCGCATCCTTG
AACAGCTGGTAAGTGGTTTGATCGTTGATCATTGCCTCACAACATGCACC
TGTGGTCACGGTATGTACTGAATACACGATCGCAAACTTGTTTTGAGGCC
ATGCAGAGTTGCCTGAGGCCACTCATGTAAATGCTGTGAACAAGTGAGCT
ACTATTTCTACAAGCATTCGAGCCGTTAAAGCAGGGTTGCCGGAAGGTTG
ATTGGTTCCAGATATGCGTGCGAAGCGGACGTCAGAGGCGCTCCGGCACA
TGCGAGCGCGTTCGTCTTCACACTGCAAAGCCCACAAAATTGCTCCTGCA
TGAAAGATAGTAGAGCTGTGATTCGCTTCAGTAGTGCCAACTGTTGGCAC
TGTGCCCGACAGTGCATCACTTCCGATGAGCGTTCTACCATGGCACCTGT
GTCGAGGCTGCCTGACTGAAAGCCAGTGTGAACGGCATCTGCAGACCGTG
GTGGACCGCCACCCTTCGCATCACTGCCAAAACGCAGCACTGCAATGATG
TAGCCTTGCAACAGGTAATTTGAGGAGCAATTGAGGTTCTTAATAGACTG
AGTCATGATGGCCCATTCTTCGAATCAAGCATTCGCGCACCATGTCGCCT
CCTTGCTACATCTCAGGTGCTCACATCATGCCGTGAACTGAGCAACACAC
CAAAACTGTAATGATGCGTCTACAAAGTGGCCATTCTGCTGCAGACAGCG
TACGCCTATGACTGTCGTCGATCACGCTCTCAAAACAATGTGTGGTCCTG
CCGTGCGCCGCGCAGTGCGCGCGCGCGATGGAAGATCGGCCATCGGGACA
GGAGGTCGCGGCGCAGGTGCGCGAGCGCTACCGCGCGTACGCCCACGAAA
CCGACTCGCTGAAGCTGCGCATGCTGCTCGCCGAGGCAGCGCAGCACATA
GATACTCTGCAGGGCACAGTGGCGCGTACATCGCCGGACATGCCGCCGCC
GCCGGGCAGCTGGCTGGACGTAGATGACCCTGAGGACAGGAGGGGGCGCG
TTGGGGTCGGGTTCCCGTGGCAGAGGCCAGTAGCACAAGAAGGAAGGCAA
TGACACGTGGAGTGACAATCGGTGTGCAGTGTGGCTCACTGCTGCGGTGC
TGGCTGTCAGCAGGCGTAGTGCGTGTGCAAGTGCATGGGGACATCCGTGT
CGCTGTGCCATTTGTGATTACGCTGCGGCAATGTATTTTATGTTCATGAT
GCGCGCCCGTGCATG
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Coding sequence (CDS) from alignment at Contig_66:97031..98495-

>mRNA_9643 ID=mRNA_9643|Name=jgi.p|Trimin1|83528|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=435bp|location=Sequence derived from alignment at Contig_66:97031..98495- (Tribonema minus UTEX_B_3156 )
ATGAACGTACTCTTGCTCAGACAAACGAAGCCTGCAGGCTGTTCCATCTG
CGTTAGATGCCTGGCGATCAAAACCAGCAAGGTGCCGAGCCTGAAGGACT
TCGTGCGGAAGCGACAGGTCCTTCACTCTTACAGACAGCTGCTGAAGTGC
GCGCGCGCGATGGAAGATCGGCCATCGGGACAGGAGGTCGCGGCGCAGGT
GCGCGAGCGCTACCGCGCGTACGCCCACGAAACCGACTCGCTGAAGCTGC
GCATGCTGCTCGCCGAGGCAGCGCAGCACATAGATACTCTGCAGGGCACA
GTGGCGCGTACATCGCCGGACATGCCGCCGCCGCCGGGCAGCTGGCTGGA
CGTAGATGACCCTGAGGACAGGAGGGGGCGCGTTGGGGTCGGGTTCCCGT
GGCAGAGGCCAGTAGCACAAGAAGGAAGGCAATGA
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