Trimin1|79185|CE79184_68 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|79185
Unique NameTrimin1|79185|CE79184_68
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length178
Homology
BLAST of jgi.p|Trimin1|79185 vs. uniprot
Match: A0A835YWS3_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWS3_9STRA)

HSP 1 Score: 390 bits (1002), Expect = 7.030e-138
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0
Query:    1 MEGEKLWTFLPPCPEHLLDGYRLPPNAWGGSYNVSAGWQSPVDLYRPFSESGAHGSDGIMLSAAAAYGVPEDVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDWCGCGGSAAPPEIRSWPPQKQVEWVLQEGLCAKHGTDVGERLFKELMAGR 177
            MEGEKLWTFLPPCPEHLLDGYRLPPNAWGGSYNVSAGWQSPVDLYRPFSESGAHGSDGIMLSAAAAYGVPEDVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDWCGCGGSAAPPEIRSWPPQKQVEWVLQEGLCAKHGTDVGERLFKELMAGR
Sbjct:    1 MEGEKLWTFLPPCPEHLLDGYRLPPNAWGGSYNVSAGWQSPVDLYRPFSESGAHGSDGIMLSAAAAYGVPEDVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDWCGCGGSAAPPEIRSWPPQKQVEWVLQEGLCAKHGTDVGERLFKELMAGR 177          
BLAST of jgi.p|Trimin1|79185 vs. uniprot
Match: D8LQI0_ECTSI (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI0_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 3.220e-33
Identity = 79/176 (44.89%), Postives = 98/176 (55.68%), Query Frame = 0
Query:    1 MEGEKLWTFLPPCPE--HLLDGYRLPPNAWGGSYNVSAGWQSPVDLYRPFSESGAHGSDGIMLSAAAAYGVPEDVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDWCGCGGSAA-PPEIRSWPPQKQVEWVLQEGLCAKHGTDVGERLFKEL 173
            +EG KLWTFLPP  +    L  YRL PNA+G S+NVSAGWQS VDLY+       HG+       A   G  ++V       VQ  GE VLIPPR WHQV HL PS+AVASQ Y   R R R+F+H+ DWCG            +   + Q++ VL+  L A+HG + G   F  L
Sbjct:  242 LEGRKLWTFLPPLADLDSSLGTYRLAPNAFG-SHNVSAGWQSNVDLYQ-------HGAATASWPTA---GEGQEVMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVASQ-YMDFRVRDRVFRHMLDWCGASDDVLLSSRFDALALRDQIKEVLKVALVARHGGEKGLEAFDGL 405          
BLAST of jgi.p|Trimin1|79185 vs. uniprot
Match: A0A4D9D498_9STRA (JmjC domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D498_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.290e-13
Identity = 50/132 (37.88%), Postives = 65/132 (49.24%), Query Frame = 0
Query:    1 MEGEKLWTFLPPCPEHLLDGYRLPPNAWGGSYNVSAGWQS-PVDLYRPFSESGAHGSDGIMLSAAAAYGVPE---DVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDW 128
            +EG K+WTF PPC   L    R+ P AW G   VSAGW+S   DLY    E         +L       +PE   DV   +  +VQ EGE V+IPP W HQV HL P +++A Q        + +  H+  W
Sbjct:   50 LEGRKIWTFFPPCSADL-GLKRVLPEAWEGE--VSAGWKSVDFDLYYKVPE---------ILEGTVTLDLPEVLADVEGVQA-LVQEEGELVVIPPGWAHQVYHLQPGLSLAWQ-VCNRGNLKNVIMHMLTW 167          
BLAST of jgi.p|Trimin1|79185 vs. uniprot
Match: W7TWL4_9STRA (F-box protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWL4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.010e-12
Identity = 50/132 (37.88%), Postives = 65/132 (49.24%), Query Frame = 0
Query:    1 MEGEKLWTFLPPCPEHLLDGYRLPPNAWGGSYNVSAGWQSP-VDLYRPFSESGAHGSDGIMLSAAAAYGVPE---DVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDW 128
            +EG K+WTF PPC   L    R+ P AW G   VSAGW+S   DLY    E         +   A    +PE   DV   +  +VQ EGE V+IPP W HQV HL P +++A Q        + +  H+  W
Sbjct:  198 LEGRKIWTFFPPCSADL-GLKRVLPEAWEGE--VSAGWKSTDFDLYYKVPE---------IFEGAVTLDLPEVLADVEGVQA-LVQEEGELVVIPPGWAHQVYHLKPGLSLAWQ-VCNHGNLKNVIMHMLTW 315          
BLAST of jgi.p|Trimin1|79185 vs. uniprot
Match: A0A7S2CFT5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CFT5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.320e-11
Identity = 39/105 (37.14%), Postives = 50/105 (47.62%), Query Frame = 0
Query:   61 LSAAAAYGVPEDVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDWC---GCGGSAAPPEIRSWPPQKQVEWVLQEGLCAKHG 162
            L    +  VP+    RR  VVQR GE +LIPPRWWHQ  +L P +AVA Q Y        + +HI DWC   G G                +  ++Q  L +KHG
Sbjct:   32 LQGPMSQAVPQS--RRRVSVVQRAGELLLIPPRWWHQTYYLEPCVAVAGQ-YLNENNFGSVSKHILDWCNYKGAGYDFFQHRKDGVGAHTAISKLIQIALVSKHG 133          
BLAST of jgi.p|Trimin1|79185 vs. uniprot
Match: A0A7S2R9P6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9P6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.320e-6
Identity = 34/68 (50.00%), Postives = 38/68 (55.88%), Query Frame = 0
Query:    1 MEGEKLWTFLPPCP--EHLLDGYRLPPNAW-GGSYNVSAGWQSPVDLYRPFSESGAHGSDGIMLSAAA 65
            +EG KLWTFLPP    E  L   R+    W GG YN+SAGWQS VDLY    +    G  G   SAAA
Sbjct:  236 LEGSKLWTFLPPGKGTETALGSRRVLSGEWDGGKYNISAGWQSDVDLY--MEKIAGKGRSGDWPSAAA 301          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|79185 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YWS3_9STRA7.030e-138100.00JmjC domain-containing protein n=1 Tax=Tribonema m... [more]
D8LQI0_ECTSI3.220e-3344.89JmjC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A4D9D498_9STRA7.290e-1337.88JmjC domain-containing protein n=1 Tax=Nannochloro... [more]
W7TWL4_9STRA3.010e-1237.88F-box protein n=1 Tax=Nannochloropsis gaditana Tax... [more]
A0A7S2CFT5_9STRA1.320e-1137.14Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2R9P6_9STRA1.320e-650.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.120.650Cupincoord: 1..111
e-value: 2.3E-11
score: 45.5
NoneNo IPR availableSUPERFAMILY51197Clavaminate synthase-likecoord: 2..108
IPR003347JmjC domainPFAMPF02373JmjCcoord: 79..109
e-value: 3.0E-6
score: 27.6
IPR003347JmjC domainPROSITEPS51184JMJCcoord: 1..126
score: 12.780554

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:592286..594118 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|79185mRNA_2101Tribonema minus UTEX_B_3156 mRNAContig_6 592237..594355 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|79185|CE79184_68 ID=Trimin1|79185|CE79184_68|Name=jgi.p|Trimin1|79185|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=178bp
MEGEKLWTFLPPCPEHLLDGYRLPPNAWGGSYNVSAGWQSPVDLYRPFSE
SGAHGSDGIMLSAAAAYGVPEDVWARRKQVVQREGETVLIPPRWWHQVIH
LAPSIAVASQHYAGARGRRRIFQHIRDWCGCGGSAAPPEIRSWPPQKQVE
WVLQEGLCAKHGTDVGERLFKELMAGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003347JmjC_dom