mRNA_2101 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|79185
Unique NamemRNA_2101
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|79185 vs. uniprot
Match: A0A835YWS3_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWS3_9STRA)

HSP 1 Score: 380 bits (975), Expect = 4.130e-132
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1 
Query:  253 LWTFLPPCPEHLLDGYRLPPNAWGGSYNVSAGWQSPVDLYRPFSESGAHGSDGIMLSAAAAYGVPEDVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDWCGCGGSAAPPEIRSWPPQKQVEWVLQEGLCAKHGTDVGERLFKELMAGR 768
            LWTFLPPCPEHLLDGYRLPPNAWGGSYNVSAGWQSPVDLYRPFSESGAHGSDGIMLSAAAAYGVPEDVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDWCGCGGSAAPPEIRSWPPQKQVEWVLQEGLCAKHGTDVGERLFKELMAGR
Sbjct:    6 LWTFLPPCPEHLLDGYRLPPNAWGGSYNVSAGWQSPVDLYRPFSESGAHGSDGIMLSAAAAYGVPEDVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDWCGCGGSAAPPEIRSWPPQKQVEWVLQEGLCAKHGTDVGERLFKELMAGR 177
[Close]
BLAST of jgi.p|Trimin1|79185 vs. uniprot
Match: D8LQI0_ECTSI (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI0_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 3.210e-29
Identity = 76/171 (44.44%), Postives = 94/171 (54.97%), Query Frame = 1 
Query:  253 LWTFLPPCPE--HLLDGYRLPPNAWGGSYNVSAGWQSPVDLYRPFSESGAHGSDGIMLSAAAAYGVPEDVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDWCGCGGSAA-PPEIRSWPPQKQVEWVLQEGLCAKHGTDVGERLFKEL 756
            LWTFLPP  +    L  YRL PNA+G S+NVSAGWQS VDLY+       HG+       A   G  ++V       VQ  GE VLIPPR WHQV HL PS+AVASQ Y   R R R+F+H+ DWCG            +   + Q++ VL+  L A+HG + G   F  L
Sbjct:  247 LWTFLPPLADLDSSLGTYRLAPNAFG-SHNVSAGWQSNVDLYQ-------HGAATASWPTA---GEGQEVMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVASQ-YMDFRVRDRVFRHMLDWCGASDDVLLSSRFDALALRDQIKEVLKVALVARHGGEKGLEAFDGL 405
[Close]
BLAST of jgi.p|Trimin1|79185 vs. uniprot
Match: A0A7S2R9P6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9P6_9STRA)

HSP 1 Score: 101 bits (251), Expect = 9.040e-21
Identity = 70/208 (33.65%), Postives = 89/208 (42.79%), Query Frame = 1 
Query:  253 LWTFLPPCP--EHLLDGYRLPPNAW-GGSYNVSAGWQSPVDLYRPFSESGAHGSD-------GIMLSAAAAYGV--------------PEDVWAR------------RKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDWCGCGGSAAPPEIRSWPPQKQVEWVLQE----GLCAKHGTDVGERLFKEL 756
            LWTFLPP    E  L   R+    W GG YN+SAGWQS VDLY           D       G+M S A  Y +              P +                R  V+QREG+ V IPP WWHQ  HL PS+AVA Q Y  ++  +++  H+  WC      A    +     +  E  +QE     L A+HG   G+ LF  L
Sbjct:  241 LWTFLPPGKGTETALGSRRVLSGEWDGGKYNISAGWQSDVDLYMEKIAGKGRSGDWPSAAALGVMPSIARDYALGLVEGSCNTGHPFMPSNAMVLDALVDGRSLEDGRIAVLQREGDLVHIPPGWWHQTYHLEPSVAVAGQ-YLSSQNFQKVAAHVCKWCDASIGDAGSHFQQVADTEGYETAIQELLLLALRAQHGQAKGDELFSSL 447
[Close]
BLAST of jgi.p|Trimin1|79185 vs. uniprot
Match: A0A7S2CFT5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CFT5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 7.610e-11
Identity = 39/105 (37.14%), Postives = 50/105 (47.62%), Query Frame = 1 
Query:  418 LSAAAAYGVPEDVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDWC---GCGGSAAPPEIRSWPPQKQVEWVLQEGLCAKHG 723
            L    +  VP+    RR  VVQR GE +LIPPRWWHQ  +L P +AVA Q Y        + +HI DWC   G G                +  ++Q  L +KHG
Sbjct:   32 LQGPMSQAVPQS--RRRVSVVQRAGELLLIPPRWWHQTYYLEPCVAVAGQ-YLNENNFGSVSKHILDWCNYKGAGYDFFQHRKDGVGAHTAISKLIQIALVSKHG 133
[Close]
BLAST of jgi.p|Trimin1|79185 vs. uniprot
Match: A0A4D9D498_9STRA (JmjC domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D498_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.820e-9
Identity = 47/127 (37.01%), Postives = 61/127 (48.03%), Query Frame = 1 
Query:  253 LWTFLPPCPEHLLDGYRLPPNAWGGSYNVSAGWQS-PVDLYRPFSESGAHGSDGIMLSAAAAYGVPE---DVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDW 621
            +WTF PPC   L    R+ P AW G   VSAGW+S   DLY    E         +L       +PE   DV   +  +VQ EGE V+IPP W HQV HL P +++A Q        + +  H+  W
Sbjct:   55 IWTFFPPCSADL-GLKRVLPEAWEGE--VSAGWKSVDFDLYYKVPE---------ILEGTVTLDLPEVLADVEGVQA-LVQEEGELVVIPPGWAHQVYHLQPGLSLAWQ-VCNRGNLKNVIMHMLTW 167
[Close]
BLAST of jgi.p|Trimin1|79185 vs. uniprot
Match: W7TWL4_9STRA (F-box protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWL4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 9.260e-9
Identity = 47/127 (37.01%), Postives = 61/127 (48.03%), Query Frame = 1 
Query:  253 LWTFLPPCPEHLLDGYRLPPNAWGGSYNVSAGWQSP-VDLYRPFSESGAHGSDGIMLSAAAAYGVPE---DVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDW 621
            +WTF PPC   L    R+ P AW G   VSAGW+S   DLY    E         +   A    +PE   DV   +  +VQ EGE V+IPP W HQV HL P +++A Q        + +  H+  W
Sbjct:  203 IWTFFPPCSADL-GLKRVLPEAWEGE--VSAGWKSTDFDLYYKVPE---------IFEGAVTLDLPEVLADVEGVQA-LVQEEGELVVIPPGWAHQVYHLKPGLSLAWQ-VCNHGNLKNVIMHMLTW 315
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|79185 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YWS3_9STRA4.130e-132100.00JmjC domain-containing protein n=1 Tax=Tribonema m... [more]
D8LQI0_ECTSI3.210e-2944.44JmjC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2R9P6_9STRA9.040e-2133.65Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2CFT5_9STRA7.610e-1137.14Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A4D9D498_9STRA2.820e-937.01JmjC domain-containing protein n=1 Tax=Nannochloro... [more]
W7TWL4_9STRA9.260e-937.01F-box protein n=1 Tax=Nannochloropsis gaditana Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:592237..594355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|79185|CE79184_68
Max annot lvl2759|Eukaryota
EggNOG OGs2CZ69@1|root,2S8PH@2759|Eukaryota
Evalue5.27e-34
Seed ortholog2880.D8LQI0
Hectar predicted targeting categoryother localisation
TranscriptId79507
TrackFilteredModels1
ProteinId79185
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|79185gene_2101Tribonema minus UTEX_B_3156 geneContig_6 592237..594355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|79185Trimin1|79185|CE79184_68Tribonema minus UTEX_B_3156 polypeptideContig_6 592286..594118 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2101_3exon_2101_3Tribonema minus UTEX_B_3156 exonContig_6 592237..592375 -
exon_2101_2exon_2101_2Tribonema minus UTEX_B_3156 exonContig_6 592885..593091 -
exon_2101_1exon_2101_1Tribonema minus UTEX_B_3156 exonContig_6 593882..594355 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_2101UTR3_2101Tribonema minus UTEX_B_3156 three_prime_UTRContig_6 592237..592285 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2101CDS_2101Tribonema minus UTEX_B_3156 CDSContig_6 593882..594118 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_2101UTR5_2101Tribonema minus UTEX_B_3156 five_prime_UTRContig_6 594119..594355 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2101 ID=mRNA_2101|Name=jgi.p|Trimin1|79185|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=820bp|location=Sequence derived from alignment at Contig_6:592237..594355- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGATTCTTATTCACTGCCGTTCACCCATACACATTATCCTGCGTCCCCCT
GTTATACACCCCAGACCCCTACGAATGGCTGGGGTGGAACGTACTTATGG
AGGGGGAAAAGCTCTGTGTGCTGCCTATCCATCGTGCATCCTGATTCTTA
TCCACTGCCGTTCACCCACACACATTATCCTGCGTCTCCCTTTTATACAC
CCGAGACCCCTACGAATGGCTGGGGTGGAACGTCCTCATGGAAGGGGAAA
AGCTCTGGACTTTCCTCCCCCCCTGCCCAGAGCACCTACTAGACGGTTAC
AGGCTGCCCCCAAATGCGTGGGGGGGGTCCTACAATGTCAGCGCCGGCTG
GCAATCCCCAGTCGACCTTTACCGCCCATTCTCTGAGTCTGGTGCGCACG
GGAGCGACGGCATCATGCTGAGCGCTGCTGCGGCGTATGGCGTGCCAGAA
GATGTGTGGGCACGGCGGAAACAGGTCGTGCAGCGCGAAGGCGAGACAGT
GCTCATACCCCCGCGCTGGTGGCACCAGGTCATCCACCTGGCGCCGAGCA
TCGCTGTCGCATCGCAGCACTACGCGGGCGCGCGCGGGCGGCGGCGCATC
TTCCAGCACATCCGCGACTGGTGCGGCTGCGGCGGCAGCGCCGCGCCGCC
TGAGATACGGTCGTGGCCGCCACAGAAGCAGGTGGAATGGGTTCTGCAAG
AGGGGCTCTGCGCAAAGCATGGCACTGATGTCGGGGAGCGGCTATTCAAA
GAGCTCATGGCTGGCAGATGACACTAAGCAGCCAGAAAAAAACACAATTC
TTGGCAACTACATACCTGAG
back to top

protein sequence of jgi.p|Trimin1|79185

>Trimin1|79185|CE79184_68 ID=Trimin1|79185|CE79184_68|Name=jgi.p|Trimin1|79185|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=178bp
MEGEKLWTFLPPCPEHLLDGYRLPPNAWGGSYNVSAGWQSPVDLYRPFSE
SGAHGSDGIMLSAAAAYGVPEDVWARRKQVVQREGETVLIPPRWWHQVIH
LAPSIAVASQHYAGARGRRRIFQHIRDWCGCGGSAAPPEIRSWPPQKQVE
WVLQEGLCAKHGTDVGERLFKELMAGR*
back to top

mRNA from alignment at Contig_6:592237..594355-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2101 ID=mRNA_2101|Name=jgi.p|Trimin1|79185|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2119bp|location=Sequence derived from alignment at Contig_6:592237..594355- (Tribonema minus UTEX_B_3156 )
TGATTCTTATTCACTGCCGTTCACCCATACACATTATCCTGCGTCCCCCT
GTTATACACCCCAGACCCCTACGAATGGCTGGGGTGGAACGTACTTATGG
AGGGGGAAAAGCTCTGTGTGCTGCCTATCCATCGTGCATCCTGATTCTTA
TCCACTGCCGTTCACCCACACACATTATCCTGCGTCTCCCTTTTATACAC
CCGAGACCCCTACGAATGGCTGGGGTGGAACGTCCTCATGGAAGGGGAAA
AGCTCTGGACTTTCCTCCCCCCCTGCCCAGAGCACCTACTAGACGGTTAC
AGGCTGCCCCCAAATGCGTGGGGGGGGTCCTACAATGTCAGCGCCGGCTG
GCAATCCCCAGTCGACCTTTACCGCCCATTCTCTGAGTCTGGTGCGCACG
GGAGCGACGGCATCATGCTGAGCGCTGCTGCGGCGTATGGCGTGCCAGAA
GATGTGTGGGCACGGCGGAAACAGGTGACCGCCAGGTTTGCTGCTGCGTT
GCCGTAACAAACCTCACCACCAATTGTGATAGTACATGCAATTTCAGGTG
GGCAGTGATGGCGTCGTTTTGAAGGCAGCAGCGGACGATGCCATGTCGAG
CGCTGCTGCCAATAATTAGATCCAGGCCCTGTGTCGGCACGGAGTCACCA
GACAGATGTGTCGGTCCTGTGCTGTTTTCAGCATAAGGCCAGGGCGGTGC
CCCGAAGCACTGGTAAAGGTCACTTTGCAGCCCACCATTGCTGACGTTCT
CCCGGGCATCCTCCGTGACAGTGTTGGAGAATTGCAAGGAGCCCTGACCT
GAACCGCCAACCCTGCTCGCACCTTGTTTCAACATCATCATCGCGTCCCT
TGCGCAGTGCAGAAGCTGACGGTGTGCTGATGTATTATCATGCGGCCAAG
TTGATGAAGCGTTCGTACAATCTTTGATGTGGCAACTTGACGTCCATCAA
ACTCACTCAAAAGTTCCAAGTCAACCCTCTCAGTGGTCCCATCAAACCGC
AATAACAACTGCCCCCAATATGCAACTCCAAAGAATTTCCTCGCGTGGCT
CACCCCCCCCCCCCCCCCCCCCCCCCCCTCGCCTCGCGCACCCTCGCCCG
TCATACAGCGCGAGGGGCACTCATGCAGCCAACACACTCGCCAGCACAGT
GATGATATAGCCGCATTCACTCAGTGTCACCCTGGACAAGTCTTGATGAT
GCTACCCAATTACTCTGCATTATCAACCTCCAACCCCCCCCCCCTCGCGT
ACCGCCTCCGTCAGGTCGTGCAGCGCGAAGGCGAGACAGTGCTCATACCC
CCGCGCTGGTGGCACCAGGTCATCCACCTGGCGCCGAGCATCGCTGTCGC
ATCGCAGCACTACGCGGGCGCGCGCGGGCGGCGGCGCATCTTCCAGCACA
TCCGCGACTGGTGCGGCTGCGGCGGCAGCGCCGCGCCGCCTGAGATACGG
TCGTGGCCGCCACAGAAGCAGGTGACTTTTGATAAGGTTTTACACGCGTA
CTTTCTGTTGCATAACGCTAGGCTGAGGTGAGGTGCATGCACGGGTGATG
CAAAGCGTGCGACATTCGTAGGGTCAATTGAAGGTTAGGGTTAGGTTAGG
GCGATGGCTTTGCAATTGTTTGTGTGTGCTGTGAGGTTTAAAAATCAAAT
TGCAACTGCAATGTGATGGTCAAGTTTCGTGCAACGGGATATGAATTGCT
GTATTGTTTTAAGATTACGCGCAGAGCAGCTGATGACATCCACTAAGTTG
TATAATCACAGACCCTGTGAATATACTCGTACTTCCTTTGTAAATAGAAG
TAACCATAAACAAGTATTGTATAAATTTGTTTTAACTTGATGTGGATGCG
TTTATCCGTGCATGAATCTGTTGCCGCCGGATGAGCACTCGCACTCCACC
CTTTCATGGACCTGCATTCACTCAGTATTTTATTGATTCATGACCTCATT
GCCGCTGGATGGACGTTTGTGTATGCACAGGTGGAATGGGTTCTGCAAGA
GGGGCTCTGCGCAAAGCATGGCACTGATGTCGGGGAGCGGCTATTCAAAG
AGCTCATGGCTGGCAGATGACACTAAGCAGCCAGAAAAAAACACAATTCT
TGGCAACTACATACCTGAG
back to top

Coding sequence (CDS) from alignment at Contig_6:592237..594355-

>mRNA_2101 ID=mRNA_2101|Name=jgi.p|Trimin1|79185|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=534bp|location=Sequence derived from alignment at Contig_6:592237..594355- (Tribonema minus UTEX_B_3156 )
ATGGAAGGGGAAAAGCTCTGGACTTTCCTCCCCCCCTGCCCAGAGCACCT
ACTAGACGGTTACAGGCTGCCCCCAAATGCGTGGGGGGGGTCCTACAATG
TCAGCGCCGGCTGGCAATCCCCAGTCGACCTTTACCGCCCATTCTCTGAG
TCTGGTGCGCACGGGAGCGACGGCATCATGCTGAGCGCTGCTGCGGCGTA
TGGCGTGCCAGAAGATGTGTGGGCACGGCGGAAACAGGTCGTGCAGCGCG
AAGGCGAGACAGTGCTCATACCCCCGCGCTGGTGGCACCAGGTCATCCAC
CTGGCGCCGAGCATCGCTGTCGCATCGCAGCACTACGCGGGCGCGCGCGG
GCGGCGGCGCATCTTCCAGCACATCCGCGACTGGTGCGGCTGCGGCGGCA
GCGCCGCGCCGCCTGAGATACGGTCGTGGCCGCCACAGAAGCAGGTGGAA
TGGGTTCTGCAAGAGGGGCTCTGCGCAAAGCATGGCACTGATGTCGGGGA
GCGGCTATTCAAAGAGCTCATGGCTGGCAGATGA
back to top