Trimin1|75635|CE75634_1843 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|75635
Unique NameTrimin1|75635|CE75634_1843
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length213
Homology
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A836CK85_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK85_9STRA)

HSP 1 Score: 410 bits (1055), Expect = 8.510e-145
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0
Query:    1 MAMVKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAALGNDFPYF 212
            MAMVKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAALGNDFPYF
Sbjct:    1 MAMVKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAALGNDFPYF 212          
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: W7T6P5_9STRA (Light-harvesting protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6P5_9STRA)

HSP 1 Score: 241 bits (616), Expect = 4.030e-77
Identity = 130/210 (61.90%), Postives = 157/210 (74.76%), Query Frame = 0
Query:    3 MVKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPY 211
            ++K L+ A L+G+AAAF  P       +  +  A   V+MMA KS SIPF+P+P  LDGT PGDVGFDP+GF++W+ L +L+EAEIKH RI MLA  GW+  D  +HLPGDVH V SL AHD AVK GA++QIL+WTSI EAIS V + QML GSGRQPG F FDPL F+KD  +  KL+LNE+KNGRLAMLAFSGIVTQAAL G+ FPY
Sbjct:   69 IMKLLSFACLIGAAAAFVPP-------MPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADF-VHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPY 270          
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A4D9CSZ5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSZ5_9STRA)

HSP 1 Score: 236 bits (602), Expect = 5.680e-76
Identity = 117/173 (67.63%), Postives = 138/173 (79.77%), Query Frame = 0
Query:   40 VTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPY 211
            V+MMA KS SIPF+P+P  LDGT  GDVGFDP+GF++W+ L +L+EAEIKH RI MLA  GW+  D  +HLPGDVH V SL AHD AVK GA++QIL+WTSI EAIS + + QML GSGRQPG F FDPL F+KD  +  KL+LNE+KNGRLAMLAFSGIVTQAAL G+ FPY
Sbjct:   30 VSMMAEKSKSIPFLPRPPALDGTAAGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADF-VHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPY 201          
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: D7FWB9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB9_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 4.490e-70
Identity = 124/204 (60.78%), Postives = 146/204 (71.57%), Query Frame = 0
Query:   12 LVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLN-FSKD--AASKAKLELNEIKNGRLAMLAFSGIVTQAALGND-FPY 211
            ++ SA+AF  P     A++ R A + S ++M A KS S+PFMP+P KLDGT+ GD GFDPLGFSN++ LDFLREAE+KHGRIC LAV G+ A DLG  LPG  H V S+ AHD AV  GAM QILLW S FEAISTV V+QML GSGR PG FGFDP N +S+   A  KA +EL EI + RLAM AF G+VTQA L N  FPY
Sbjct:   11 VLASASAFVPP-----AQLPRVASSNSGMSMQATKSKSLPFMPQPAKLDGTMAGDAGFDPLGFSNFIPLDFLREAELKHGRICQLAVVGFAATDLGFRLPGAEHAVASIAAHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPY 209          
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A6V1QB66_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QB66_HETAK)

HSP 1 Score: 216 bits (550), Expect = 4.760e-68
Identity = 105/174 (60.34%), Postives = 129/174 (74.14%), Query Frame = 0
Query:   39 QVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPY 211
            + TMMA KSA++PFMPKP  LD ++PG  GFDP+GFS+W+++D+LREAEIKHGRICMLAV G++A D+GLHLPGD+HN  SL AHD A+K GAM Q+L+     E    + + + + GSGR PG FGFDPL FSK      +    EI NGRLAMLAFSGIVTQ+AL  N FPY
Sbjct:   29 KTTMMAEKSAALPFMPKPANLDESLPGYAGFDPVGFSDWLSVDWLREAEIKHGRICMLAVVGYIATDMGLHLPGDMHNYDSLLAHDQAIKNGAMQQLLMGIGWAETFGFLAIGETMRGSGRAPGDFGFDPLGFSKTPEKAQEYATKEINNGRLAMLAFSGIVTQSALYENSFPY 202          
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A0G4FMW2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FMW2_VITBC)

HSP 1 Score: 210 bits (535), Expect = 2.490e-65
Identity = 106/169 (62.72%), Postives = 128/169 (75.74%), Query Frame = 0
Query:   47 SASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASK--AKLELNEIKNGRLAMLAFSGIVTQAALGND-FPYF 212
            S SIPFMP+P +LDGT+  D GFDP GFSNW++L + REAEIKHGR+CMLA  G++  +    LPG+VH V SLEAH+ AV++GAMSQILLW S  E  ST+ VVQM +GSGRQPG FGFDPL F K+ + +    ++  EIKNGRLAMLA SGI+TQAAL N  FPYF
Sbjct:   69 SKSIPFMPRPYRLDGTMAADDGFDPFGFSNWLDLRWAREAEIKHGRLCMLATVGYIFAEY-FKLPGEVHQVSSLEAHNKAVEYGAMSQILLWISFAEIFSTIAVVQMYDGSGRQPGEFGFDPLGFCKNKSPEFVKDMQKKEIKNGRLAMLAISGILTQAALTNKGFPYF 236          
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A7S3ZSN9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSN9_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.140e-64
Identity = 99/168 (58.93%), Postives = 131/168 (77.98%), Query Frame = 0
Query:   46 KSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPYF 212
            +S ++PF+P+P+KL G V GD GFDPLG S+WV +++LRE+E+KHGR+CMLAV G+VA DLG  LPG++HNV S+ AHD AV  GAM+QI +W ++ E I  + +++ML+GSGRQPG FGFDPL      A+  +++L E++NGRLAMLAFSGIVTQA L G  FPYF
Sbjct:   43 RSPAMPFLPRPQKLKGMV-GDKGFDPLGLSDWVPVEWLRESELKHGRVCMLAVVGFVATDLGFRLPGEMHNVASINAHDMAVDMGAMTQIGIWIAVAECIGYLAILEMLDGSGRQPGDFGFDPLQIG--GANDPEMQLKELENGRLAMLAFSGIVTQAVLTGKGFPYF 207          
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A7R9YG40_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG40_9STRA)

HSP 1 Score: 206 bits (525), Expect = 7.180e-64
Identity = 106/170 (62.35%), Postives = 131/170 (77.06%), Query Frame = 0
Query:   46 KSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNG-SGRQPGYFGFDPL-NFSK-DAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPY 211
            KSAS+PFMP+P  LDGT+ GDVGFDPLG SN V++ ++REAE+KHGRICMLAV G++A DLG+HLPG VHNVGS+ AHD AVKFG MSQILLW S+ E  S + V +M+ G + RQPG F  D L N++K +   K  L+L E+KNGRLAM+AF G+VTQA L G  FP+
Sbjct:   63 KSASLPFMPRPAALDGTLVGDVGFDPLGLSNAVDVRWMREAELKHGRICMLAVVGFIATDLGIHLPGAVHNVGSVAAHDAAVKFGGMSQILLWVSVAEVWSAIAVKEMMLGETDRQPGDFKLDLLGNYAKANDQQKKDLQLKELKNGRLAMIAFGGMVTQAVLTGKPFPF 232          
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: F0Y5A3_AURAN (Putative plastid light harvesting protein isoform 33 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5A3_AURAN)

HSP 1 Score: 198 bits (504), Expect = 4.220e-61
Identity = 108/192 (56.25%), Postives = 130/192 (67.71%), Query Frame = 0
Query:   23 SAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQML-NGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPYF 212
            +A A A VA    A S V M    S ++PFM KPE LDGT  GDVGFDP GF++  ++ +LREAEIKHGRICMLA  G+VA DLG  LPGD+H V S+ AHD A K+GAM Q+ LW S  E I + GV QM+  GS R+PG +G DPL+F      KA ++L EI + RLAM AFSG+VTQA L G  FPYF
Sbjct:   11 AASASALVAPVPAAKSAVAMNYQASEALPFMEKPEALDGTYAGDVGFDPFGFTSIFDVKWLREAEIKHGRICMLAWTGFVATDLGFTLPGDMHQVSSVLAHDVACKYGAMQQLFLWLSFTEVILSAGVAQMMWMGSPREPGDYGLDPLDFCSTPEKKADMKLKEITHCRLAMFAFSGVVTQAVLTGKGFPYF 202          
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A6S9U0F0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6S9U0F0_CHRCT)

HSP 1 Score: 196 bits (499), Expect = 5.640e-60
Identity = 100/166 (60.24%), Postives = 125/166 (75.30%), Query Frame = 0
Query:   47 SASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPY 211
            S S+PF+ K + L+G V GDVGFDPLGFS  + +D+LREAE+KH R+CMLA  G+V  D  L LPG ++ V +L+AHD +V  G+MSQ+LLW  I E IS V + QML GSGR PG FGFDP+ F+KDA+ KA LE+ E+ NGRLAM+AFSG+VTQA L GN FPY
Sbjct:   64 SQSMPFLVKRKALNGYV-GDVGFDPLGFSEILPMDWLREAELKHCRVCMLATVGFVFTDF-LTLPGSIYQVSTLDAHDVSVASGSMSQLLLWIGIAEIISVVAIQQMLAGSGRAPGEFGFDPMGFAKDASKKADLEMKELANGRLAMMAFSGMVTQAVLTGNSFPY 227          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CK85_9STRA8.510e-145100.00Light harvesting complex protein n=1 Tax=Tribonema... [more]
W7T6P5_9STRA4.030e-7761.90Light-harvesting protein n=2 Tax=Nannochloropsis g... [more]
A0A4D9CSZ5_9STRA5.680e-7667.63Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
D7FWB9_ECTSI4.490e-7060.78Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6V1QB66_HETAK4.760e-6860.34Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4FMW2_VITBC2.490e-6562.72Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S3ZSN9_9STRA1.140e-6458.93Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7R9YG40_9STRA7.180e-6462.35Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0Y5A3_AURAN4.220e-6156.25Putative plastid light harvesting protein isoform ... [more]
A0A6S9U0F0_CHRCT5.640e-6060.24Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 56..203
e-value: 2.2E-39
score: 135.5
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 43..211
e-value: 2.4E-44
score: 153.6
NoneNo IPR availablePANTHERPTHR21649:SF125CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTICcoord: 11..209
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 43..207
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 11..209

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_539contigContig_539:4741..7078 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|75635mRNA_18973Tribonema minus UTEX_B_3156 mRNAContig_539 4722..7338 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|75635|CE75634_1843 ID=Trimin1|75635|CE75634_1843|Name=jgi.p|Trimin1|75635|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=213bp
MAMVKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASI
PFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAG
WVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGV
VQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIV
TQAALGNDFPYF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln