mRNA_18973 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|75635
Unique NamemRNA_18973
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A836CK85_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK85_9STRA)

HSP 1 Score: 413 bits (1062), Expect = 2.800e-144
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 2
Query:   20 MAMVKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAALGNDFPYF 655
            MAMVKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAALGNDFPYF
Sbjct:    1 MAMVKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAALGNDFPYF 212          
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: W7T6P5_9STRA (Light-harvesting protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6P5_9STRA)

HSP 1 Score: 244 bits (622), Expect = 1.370e-76
Identity = 130/210 (61.90%), Postives = 157/210 (74.76%), Query Frame = 2
Query:   26 MVKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPY 652
            ++K L+ A L+G+AAAF  P       +  +  A   V+MMA KS SIPF+P+P  LDGT PGDVGFDP+GF++W+ L +L+EAEIKH RI MLA  GW+  D  +HLPGDVH V SL AHD AVK GA++QIL+WTSI EAIS V + QML GSGRQPG F FDPL F+KD  +  KL+LNE+KNGRLAMLAFSGIVTQAAL G+ FPY
Sbjct:   69 IMKLLSFACLIGAAAAFVPP-------MPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADF-VHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPY 270          
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A4D9CSZ5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSZ5_9STRA)

HSP 1 Score: 236 bits (603), Expect = 1.080e-74
Identity = 131/209 (62.68%), Postives = 156/209 (74.64%), Query Frame = 2
Query:   29 VKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPY 652
            +K L+ A L+G+AAAF  P   A  R  R AV     +MMA KS SIPF+P+P  LDGT  GDVGFDP+GF++W+ L +L+EAEIKH RI MLA  GW+  D  +HLPGDVH V SL AHD AVK GA++QIL+WTSI EAIS + + QML GSGRQPG F FDPL F+KD  +  KL+LNE+KNGRLAMLAFSGIVTQAAL G+ FPY
Sbjct:    1 MKLLSFACLIGAAAAFV-PLMPATTRT-RGAV-----SMMAEKSKSIPFLPRPPALDGTAAGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADF-VHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPY 201          
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: D7FWB9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB9_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 5.720e-69
Identity = 124/204 (60.78%), Postives = 146/204 (71.57%), Query Frame = 2
Query:   53 LVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLN-FSKD--AASKAKLELNEIKNGRLAMLAFSGIVTQAALGND-FPY 652
            ++ SA+AF  P     A++ R A + S ++M A KS S+PFMP+P KLDGT+ GD GFDPLGFSN++ LDFLREAE+KHGRIC LAV G+ A DLG  LPG  H V S+ AHD AV  GAM QILLW S FEAISTV V+QML GSGR PG FGFDP N +S+   A  KA +EL EI + RLAM AF G+VTQA L N  FPY
Sbjct:   11 VLASASAFVPP-----AQLPRVASSNSGMSMQATKSKSLPFMPQPAKLDGTMAGDAGFDPLGFSNFIPLDFLREAELKHGRICQLAVVGFAATDLGFRLPGAEHAVASIAAHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPY 209          
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A6V1QB66_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QB66_HETAK)

HSP 1 Score: 216 bits (549), Expect = 1.680e-66
Identity = 105/174 (60.34%), Postives = 129/174 (74.14%), Query Frame = 2
Query:  134 QVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPY 652
            + TMMA KSA++PFMPKP  LD ++PG  GFDP+GFS+W+++D+LREAEIKHGRICMLAV G++A D+GLHLPGD+HN  SL AHD A+K GAM Q+L+     E    + + + + GSGR PG FGFDPL FSK      +    EI NGRLAMLAFSGIVTQ+AL  N FPY
Sbjct:   29 KTTMMAEKSAALPFMPKPANLDESLPGYAGFDPVGFSDWLSVDWLREAEIKHGRICMLAVVGYIATDMGLHLPGDMHNYDSLLAHDQAIKNGAMQQLLMGIGWAETFGFLAIGETMRGSGRAPGDFGFDPLGFSKTPEKAQEYATKEINNGRLAMLAFSGIVTQSALYENSFPY 202          
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A0G4FMW2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FMW2_VITBC)

HSP 1 Score: 210 bits (534), Expect = 8.580e-64
Identity = 106/169 (62.72%), Postives = 128/169 (75.74%), Query Frame = 2
Query:  158 SASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASK--AKLELNEIKNGRLAMLAFSGIVTQAALGND-FPYF 655
            S SIPFMP+P +LDGT+  D GFDP GFSNW++L + REAEIKHGR+CMLA  G++  +    LPG+VH V SLEAH+ AV++GAMSQILLW S  E  ST+ VVQM +GSGRQPG FGFDPL F K+ + +    ++  EIKNGRLAMLA SGI+TQAAL N  FPYF
Sbjct:   69 SKSIPFMPRPYRLDGTMAADDGFDPFGFSNWLDLRWAREAEIKHGRLCMLATVGYIFAEY-FKLPGEVHQVSSLEAHNKAVEYGAMSQILLWISFAEIFSTIAVVQMYDGSGRQPGEFGFDPLGFCKNKSPEFVKDMQKKEIKNGRLAMLAISGILTQAALTNKGFPYF 236          
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A7S3ZSN9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSN9_9STRA)

HSP 1 Score: 207 bits (527), Expect = 3.880e-63
Identity = 99/168 (58.93%), Postives = 131/168 (77.98%), Query Frame = 2
Query:  155 KSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPYF 655
            +S ++PF+P+P+KL G V GD GFDPLG S+WV +++LRE+E+KHGR+CMLAV G+VA DLG  LPG++HNV S+ AHD AV  GAM+QI +W ++ E I  + +++ML+GSGRQPG FGFDPL      A+  +++L E++NGRLAMLAFSGIVTQA L G  FPYF
Sbjct:   43 RSPAMPFLPRPQKLKGMV-GDKGFDPLGLSDWVPVEWLRESELKHGRVCMLAVVGFVATDLGFRLPGEMHNVASINAHDMAVDMGAMTQIGIWIAVAECIGYLAILEMLDGSGRQPGDFGFDPLQIG--GANDPEMQLKELENGRLAMLAFSGIVTQAVLTGKGFPYF 207          
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A7R9YG40_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG40_9STRA)

HSP 1 Score: 206 bits (524), Expect = 2.430e-62
Identity = 106/170 (62.35%), Postives = 131/170 (77.06%), Query Frame = 2
Query:  155 KSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNG-SGRQPGYFGFDPL-NFSK-DAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPY 652
            KSAS+PFMP+P  LDGT+ GDVGFDPLG SN V++ ++REAE+KHGRICMLAV G++A DLG+HLPG VHNVGS+ AHD AVKFG MSQILLW S+ E  S + V +M+ G + RQPG F  D L N++K +   K  L+L E+KNGRLAM+AF G+VTQA L G  FP+
Sbjct:   63 KSASLPFMPRPAALDGTLVGDVGFDPLGLSNAVDVRWMREAELKHGRICMLAVVGFIATDLGIHLPGAVHNVGSVAAHDAAVKFGGMSQILLWVSVAEVWSAIAVKEMMLGETDRQPGDFKLDLLGNYAKANDQQKKDLQLKELKNGRLAMIAFGGMVTQAVLTGKPFPF 232          
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: F0Y5A3_AURAN (Putative plastid light harvesting protein isoform 33 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5A3_AURAN)

HSP 1 Score: 199 bits (507), Expect = 3.430e-60
Identity = 113/212 (53.30%), Postives = 139/212 (65.57%), Query Frame = 2
Query:   26 MVKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQML-NGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPYF 655
            M ++L +  L  SA+A  AP        A+SAVA     M    S ++PFM KPE LDGT  GDVGFDP GF++  ++ +LREAEIKHGRICMLA  G+VA DLG  LPGD+H V S+ AHD A K+GAM Q+ LW S  E I + GV QM+  GS R+PG +G DPL+F      KA ++L EI + RLAM AFSG+VTQA L G  FPYF
Sbjct:    1 MARSLVLISLAASASALVAPV-----PAAKSAVA-----MNYQASEALPFMEKPEALDGTYAGDVGFDPFGFTSIFDVKWLREAEIKHGRICMLAWTGFVATDLGFTLPGDMHQVSSVLAHDVACKYGAMQQLFLWLSFTEVILSAGVAQMMWMGSPREPGDYGLDPLDFCSTPEKKADMKLKEITHCRLAMFAFSGVVTQAVLTGKGFPYF 202          
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A6J4B112_9STRA (Fucoxanthin chlorophyll a/c protein 6 n=1 Tax=Chaetoceros gracilis TaxID=184592 RepID=A0A6J4B112_9STRA)

HSP 1 Score: 196 bits (499), Expect = 6.660e-59
Identity = 121/215 (56.28%), Postives = 146/215 (67.91%), Query Frame = 2
Query:   29 VKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLH---LPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQML-NGSGRQPGYFGFDPLNF--SKDAASKAKLELNEIKNGRLAMLAFSGIVTQAALGND-FPY 652
            +K   +A L+ SAAAF APS+  GA  A +A+   +      KS ++PF+P PE L G V GD GFDP  FS++  +DFLREAEIKHGRICMLA  G+VAVDLG     LP     + ++ AHD  V+ GAMSQI LW S+FEAISTV V+QML   SGR+PGYFGFDPL F   K  A   +++L EIKNGRLAMLAFSG+VTQA L    FPY
Sbjct:    1 MKLALLASLIASAAAF-APSSSTGAARASTALDAGK------KSQALPFLPYPENLAGYV-GDAGFDPFRFSDFAPMDFLREAEIKHGRICMLAWLGFVAVDLGARIYPLPEAYEGLTAVTAHDALVQQGAMSQIFLWCSVFEAISTVSVIQMLYEESGREPGYFGFDPLGFLNGKSEAEVNEMKLKEIKNGRLAMLAFSGVVTQAVLTQGPFPY 207          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CK85_9STRA2.800e-144100.00Light harvesting complex protein n=1 Tax=Tribonema... [more]
W7T6P5_9STRA1.370e-7661.90Light-harvesting protein n=2 Tax=Nannochloropsis g... [more]
A0A4D9CSZ5_9STRA1.080e-7462.68Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
D7FWB9_ECTSI5.720e-6960.78Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6V1QB66_HETAK1.680e-6660.34Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4FMW2_VITBC8.580e-6462.72Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S3ZSN9_9STRA3.880e-6358.93Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7R9YG40_9STRA2.430e-6262.35Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0Y5A3_AURAN3.430e-6053.30Putative plastid light harvesting protein isoform ... [more]
A0A6J4B112_9STRA6.660e-5956.28Fucoxanthin chlorophyll a/c protein 6 n=1 Tax=Chae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_539contigContig_539:4722..7338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|75635|CE75634_1843
BRITEko00000,ko00001,ko00194
KEGG Pathwayko00196,map00196
KEGG koko:K08907
Preferred nameLhcr4
DescriptionChlorophyll A-B binding protein
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGs2BPHY@1|root,2S1S0@2759|Eukaryota
Evalue6.92e-62
Seed ortholog44056.XP_009035866.1
Hectar predicted targeting categorychloroplast
TranscriptId75957
TrackFilteredModels1
ProteinId75635
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|75635gene_18973Tribonema minus UTEX_B_3156 geneContig_539 4722..7338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|75635Trimin1|75635|CE75634_1843Tribonema minus UTEX_B_3156 polypeptideContig_539 4741..7078 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18973_1exon_18973_1Tribonema minus UTEX_B_3156 exonContig_539 4722..4857 +
exon_18973_2exon_18973_2Tribonema minus UTEX_B_3156 exonContig_539 5097..5181 +
exon_18973_3exon_18973_3Tribonema minus UTEX_B_3156 exonContig_539 5442..5587 +
exon_18973_4exon_18973_4Tribonema minus UTEX_B_3156 exonContig_539 6061..6304 +
exon_18973_5exon_18973_5Tribonema minus UTEX_B_3156 exonContig_539 7032..7338 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_18973UTR5_18973Tribonema minus UTEX_B_3156 five_prime_UTRContig_539 4722..4740 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18973CDS_18973Tribonema minus UTEX_B_3156 CDSContig_539 4741..4857 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_18973UTR3_18973Tribonema minus UTEX_B_3156 three_prime_UTRContig_539 7079..7338 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18973 ID=mRNA_18973|Name=jgi.p|Trimin1|75635|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=918bp|location=Sequence derived from alignment at Contig_539:4722..7338+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGTTAACCTGAGAGACAACATGGCCATGGTGAAGGCGCTCGCTGTTGCCG
GCCTTGTCGGAAGCGCTGCGGCGTTCACCGCACCCAGCGCGTTCGCTGGC
GCACGGGTAGCCCGCTCCGCCGTCGCCCCCTCTCAGGTGACCATGATGGC
TGGCAAGTCCGCCTCCATCCCATTCATGCCCAAGCCGGAGAAGCTGGACG
GCACCGTGCCGGGCGATGTCGGCTTCGACCCTCTGGGCTTCTCCAACTGG
GTGAACCTTGACTTCCTGCGCGAGGCAGAGATCAAGCACGGCCGCATCTG
CATGCTTGCCGTTGCGGGGTGGGTTGCCGTGGACCTGGGCCTGCACCTGC
CCGGAGATGTCCACAACGTGGGCTCCCTGGAGGCACACGACACGGCCGTG
AAGTTCGGCGCCATGTCCCAGATCCTCCTGTGGACCTCTATCTTCGAGGC
GATCTCCACCGTCGGCGTCGTGCAGATGCTTAACGGATCTGGCAGGCAGC
CCGGGTACTTTGGCTTTGACCCCCTTAACTTCTCCAAGGACGCCGCATCC
AAGGCAAAGCTGGAGCTCAACGAGATCAAGAACGGCCGCCTCGCCATGCT
TGCATTCTCAGGCATCGTAACACAGGCAGCGCTCGGCAACGACTTCCCCT
ACTTCTAAGCTGTTTCCCGCACCCCCCCCCTGCTACTCATCATCGACCAG
CTGCGCCTCCTGTGCTGGGGGGCTCGTGGGGGCGCGCACCCGGTTTTTCC
GCGCGCCTGGGGCATGAGTGGTTCTGTACATGTGTGTTTTAGCGCTGGCG
CGCGTGAGTGTGGTGTGTGCGCCCCAGCGAGCTCTACTCATGGCCGCATT
AAAACCAGCTGCCGCCGCCGACTACCAATTATAATACATATACAACCATC
TTACTTGACGGATAGACG
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protein sequence of jgi.p|Trimin1|75635

>Trimin1|75635|CE75634_1843 ID=Trimin1|75635|CE75634_1843|Name=jgi.p|Trimin1|75635|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=213bp
MAMVKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASI
PFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAG
WVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGV
VQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIV
TQAALGNDFPYF*
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mRNA from alignment at Contig_539:4722..7338+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18973 ID=mRNA_18973|Name=jgi.p|Trimin1|75635|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2617bp|location=Sequence derived from alignment at Contig_539:4722..7338+ (Tribonema minus UTEX_B_3156 )
TGTTAACCTGAGAGACAACATGGCCATGGTGAAGGCGCTCGCTGTTGCCG GCCTTGTCGGAAGCGCTGCGGCGTTCACCGCACCCAGCGCGTTCGCTGGC GCACGGGTAGCCCGCTCCGCCGTCGCCCCCTCTCAGGTAGACATGTGCGC CTGCTATTGGAGAGAGGTGCTATGTTTGCTCAAGTAGGGGGCAGCTGCAG TCGCAGGCATCAGTGCAGCTCTTTGCTAGGCCCTAGCTGGTCTGAGCTGG TGAAGGAAGCGGGCGCAGGAGCATGGACGGCGGCGCAGGAGCAGCCCGAG CTCCGTGTGTGTGCTGTTGTCAGCCGGCGAGGCAAGCTCACTCGCTCATC TCCTGCATGCTTGTGCGACGTGCAGGTGACCATGATGGCTGGCAAGTCCG CCTCCATCCCATTCATGCCCAAGCCGGAGAAGCTGGACGGCACCGTGCCG GGCGATGTCGGTGAGCGCGAGGCACACATGCAGAGCATGAGCAGCACCAA CGCAAGTAGCGCCGGCTTGCGCCAGTTGCTGCTTCGCTGGACGCGGCAAC AGCATGAGCGTGGCGGACGCAATGCTGCTGCACAACGCCATACCTGCTGC CTTTCGTGGCGCTGCCCCCAGACACTTATTCATCGCTTGCACGCAAGCTC CTTGGCGCGAAGCTGCGAACCGCCGAGCTCTTCTGTGCTCACTACCAGGC CTTGTCTGCTGTTGCTGCAGGCTTCGACCCTCTGGGCTTCTCCAACTGGG TGAACCTTGACTTCCTGCGCGAGGCAGAGATCAAGCACGGCCGCATCTGC ATGCTTGCCGTTGCGGGGTGGGTTGCCGTGGACCTGGGCCTGCACCTGCC CGGAGATGTCCACAACGTAAGTCCACCTGAAGGCTCATACGTCTCACTAG CTGGCATTGCGGCATTCATCATCAATTGCAAGTAGATCGTTGATAAGCTA GTGTCTGGCAGTGCTTTCTTGCCCCTGTCAAGAGATAAGCTGGTCTGTTC TGCAGCTTTGGTCATCGGAGGGCATGGTGAAGACAAGACTTGAATGCGAT CTGGCAATCATAGTTGCTGCTGCTGCGCAGCACACGTTGAGGGGGCCAAG CTATCGAAGTGTGTGAGGATGTCTATAGTGCTGACCGACTGGCGCTCTTG GAGCATCAGCACCAGTCGCTCATTTGATACCCGGCGAAGCCGCACTTGCC ACTTTGCCCTCCTCCAGTCTTGCAGTACGCGTGCATGCTGAAGTGAGACA AGTACAAGCACGTGCACAAGTACACTGCCGCACGCGCGTCTGCTCACTCT GTCAGCTGCTGCCGCGGTCACGCATGTCTGCACGCGCAGGTGGGCTCCCT GGAGGCACACGACACGGCCGTGAAGTTCGGCGCCATGTCCCAGATCCTCC TGTGGACCTCTATCTTCGAGGCGATCTCCACCGTCGGCGTCGTGCAGATG CTTAACGGATCTGGCAGGCAGCCCGGGTACTTTGGCTTTGACCCCCTTAA CTTCTCCAAGGACGCCGCATCCAAGGCAAAGCTGGAGCTCAACGAGATCA AGAACGGCCGCCTCGCCATGCTTGCATTCTCAGGTACGTAAGAGGGGTAT GCGGGCGGCCTGTTAAAACTTGGCTGGCAATTGCATGGCCATTTTGGTTC TGCCACGCGAATGGAGCACGTCAGGTGGGGGGGGGGGGGGCGGCGTTGGT CATACCCGATCAGGAGGGAGGGAGGGAGGGGGTGCTGGTCATACACGATC GGGGCGGGGGGGGGGGGGAGGGGGTGGTTGTCAATCACCAGAGTGTGCAT GGATGCAGTTGGAGGCACTTGCTGCCACCAGCAGGTTTGCTCTGTATACG GTGCGCAGCGAGCGCCAGGGTCTGGACTAACGTGTGTCCGACTTCATATT GCTCTCATCAGAGAGTCTTCATGAGTGCTAAGTACACAGTCTAGCATTCG TGCAATGGACAGACGGCCATTGCTGCTGACCAGTTTCTCACTAAAGCAAC CTTGCTGCTGACGAGCCTCTCACCAAAGCAACCTTCGGTGCCTGCAAAGC CAGCGCCTGGTATAACGCCGTCGCAGTGAGCCTGCAGTTATTGCGCTTGA TTCTCCTGTTGACGCACGTGCCTTACCTTGTCTTTGCTTGGCTGGTGTGC TCACCAGTGAGCCAGAACACAGTCGCCTTCATCACCCTCCCCATGTAGTT GAAGTTGACAAGGTAACACCAGTTTTGACACACGTATTTTGAGCTGCATA TCTCACAAAGCGCATGGCTCATCCCGTCACCACCCCCCTCCCCCCCCCCC GCCCCTGCAGGCATCGTAACACAGGCAGCGCTCGGCAACGACTTCCCCTA CTTCTAAGCTGTTTCCCGCACCCCCCCCCTGCTACTCATCATCGACCAGC TGCGCCTCCTGTGCTGGGGGGCTCGTGGGGGCGCGCACCCGGTTTTTCCG CGCGCCTGGGGCATGAGTGGTTCTGTACATGTGTGTTTTAGCGCTGGCGC GCGTGAGTGTGGTGTGTGCGCCCCAGCGAGCTCTACTCATGGCCGCATTA AAACCAGCTGCCGCCGCCGACTACCAATTATAATACATATACAACCATCT TACTTGACGGATAGACG
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Coding sequence (CDS) from alignment at Contig_539:4722..7338+

>mRNA_18973 ID=mRNA_18973|Name=jgi.p|Trimin1|75635|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=639bp|location=Sequence derived from alignment at Contig_539:4722..7338+ (Tribonema minus UTEX_B_3156 )
ATGGCCATGGTGAAGGCGCTCGCTGTTGCCGGCCTTGTCGGAAGCGCTGC
GGCGTTCACCGCACCCAGCGCGTTCGCTGGCGCACGGGTAGCCCGCTCCG
CCGTCGCCCCCTCTCAGGTGACCATGATGGCTGGCAAGTCCGCCTCCATC
CCATTCATGCCCAAGCCGGAGAAGCTGGACGGCACCGTGCCGGGCGATGT
CGGCTTCGACCCTCTGGGCTTCTCCAACTGGGTGAACCTTGACTTCCTGC
GCGAGGCAGAGATCAAGCACGGCCGCATCTGCATGCTTGCCGTTGCGGGG
TGGGTTGCCGTGGACCTGGGCCTGCACCTGCCCGGAGATGTCCACAACGT
GGGCTCCCTGGAGGCACACGACACGGCCGTGAAGTTCGGCGCCATGTCCC
AGATCCTCCTGTGGACCTCTATCTTCGAGGCGATCTCCACCGTCGGCGTC
GTGCAGATGCTTAACGGATCTGGCAGGCAGCCCGGGTACTTTGGCTTTGA
CCCCCTTAACTTCTCCAAGGACGCCGCATCCAAGGCAAAGCTGGAGCTCA
ACGAGATCAAGAACGGCCGCCTCGCCATGCTTGCATTCTCAGGCATCGTA
ACACAGGCAGCGCTCGGCAACGACTTCCCCTACTTCTAA
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