mRNA_18973 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A836CK85_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK85_9STRA) HSP 1 Score: 413 bits (1062), Expect = 2.800e-144 Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 2
Query: 20 MAMVKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAALGNDFPYF 655
MAMVKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAALGNDFPYF
Sbjct: 1 MAMVKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAALGNDFPYF 212
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: W7T6P5_9STRA (Light-harvesting protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6P5_9STRA) HSP 1 Score: 244 bits (622), Expect = 1.370e-76 Identity = 130/210 (61.90%), Postives = 157/210 (74.76%), Query Frame = 2
Query: 26 MVKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPY 652
++K L+ A L+G+AAAF P + + A V+MMA KS SIPF+P+P LDGT PGDVGFDP+GF++W+ L +L+EAEIKH RI MLA GW+ D +HLPGDVH V SL AHD AVK GA++QIL+WTSI EAIS V + QML GSGRQPG F FDPL F+KD + KL+LNE+KNGRLAMLAFSGIVTQAAL G+ FPY
Sbjct: 69 IMKLLSFACLIGAAAAFVPP-------MPVTTRARGAVSMMAEKSKSIPFLPRPPALDGTAPGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADF-VHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPY 270
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A4D9CSZ5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSZ5_9STRA) HSP 1 Score: 236 bits (603), Expect = 1.080e-74 Identity = 131/209 (62.68%), Postives = 156/209 (74.64%), Query Frame = 2
Query: 29 VKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPY 652
+K L+ A L+G+AAAF P A R R AV +MMA KS SIPF+P+P LDGT GDVGFDP+GF++W+ L +L+EAEIKH RI MLA GW+ D +HLPGDVH V SL AHD AVK GA++QIL+WTSI EAIS + + QML GSGRQPG F FDPL F+KD + KL+LNE+KNGRLAMLAFSGIVTQAAL G+ FPY
Sbjct: 1 MKLLSFACLIGAAAAFV-PLMPATTRT-RGAV-----SMMAEKSKSIPFLPRPPALDGTAAGDVGFDPVGFTSWLPLAYLQEAEIKHCRIAMLATLGWIVADF-VHLPGDVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVIAISQMLEGSGRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTGHSFPY 201
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: D7FWB9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB9_ECTSI) HSP 1 Score: 222 bits (566), Expect = 5.720e-69 Identity = 124/204 (60.78%), Postives = 146/204 (71.57%), Query Frame = 2
Query: 53 LVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLN-FSKD--AASKAKLELNEIKNGRLAMLAFSGIVTQAALGND-FPY 652
++ SA+AF P A++ R A + S ++M A KS S+PFMP+P KLDGT+ GD GFDPLGFSN++ LDFLREAE+KHGRIC LAV G+ A DLG LPG H V S+ AHD AV GAM QILLW S FEAISTV V+QML GSGR PG FGFDP N +S+ A KA +EL EI + RLAM AF G+VTQA L N FPY
Sbjct: 11 VLASASAFVPP-----AQLPRVASSNSGMSMQATKSKSLPFMPQPAKLDGTMAGDAGFDPLGFSNFIPLDFLREAELKHGRICQLAVVGFAATDLGFRLPGAEHAVASIAAHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPY 209
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A6V1QB66_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QB66_HETAK) HSP 1 Score: 216 bits (549), Expect = 1.680e-66 Identity = 105/174 (60.34%), Postives = 129/174 (74.14%), Query Frame = 2
Query: 134 QVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPY 652
+ TMMA KSA++PFMPKP LD ++PG GFDP+GFS+W+++D+LREAEIKHGRICMLAV G++A D+GLHLPGD+HN SL AHD A+K GAM Q+L+ E + + + + GSGR PG FGFDPL FSK + EI NGRLAMLAFSGIVTQ+AL N FPY
Sbjct: 29 KTTMMAEKSAALPFMPKPANLDESLPGYAGFDPVGFSDWLSVDWLREAEIKHGRICMLAVVGYIATDMGLHLPGDMHNYDSLLAHDQAIKNGAMQQLLMGIGWAETFGFLAIGETMRGSGRAPGDFGFDPLGFSKTPEKAQEYATKEINNGRLAMLAFSGIVTQSALYENSFPY 202
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A0G4FMW2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FMW2_VITBC) HSP 1 Score: 210 bits (534), Expect = 8.580e-64 Identity = 106/169 (62.72%), Postives = 128/169 (75.74%), Query Frame = 2
Query: 158 SASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASK--AKLELNEIKNGRLAMLAFSGIVTQAALGND-FPYF 655
S SIPFMP+P +LDGT+ D GFDP GFSNW++L + REAEIKHGR+CMLA G++ + LPG+VH V SLEAH+ AV++GAMSQILLW S E ST+ VVQM +GSGRQPG FGFDPL F K+ + + ++ EIKNGRLAMLA SGI+TQAAL N FPYF
Sbjct: 69 SKSIPFMPRPYRLDGTMAADDGFDPFGFSNWLDLRWAREAEIKHGRLCMLATVGYIFAEY-FKLPGEVHQVSSLEAHNKAVEYGAMSQILLWISFAEIFSTIAVVQMYDGSGRQPGEFGFDPLGFCKNKSPEFVKDMQKKEIKNGRLAMLAISGILTQAALTNKGFPYF 236
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A7S3ZSN9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSN9_9STRA) HSP 1 Score: 207 bits (527), Expect = 3.880e-63 Identity = 99/168 (58.93%), Postives = 131/168 (77.98%), Query Frame = 2
Query: 155 KSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPYF 655
+S ++PF+P+P+KL G V GD GFDPLG S+WV +++LRE+E+KHGR+CMLAV G+VA DLG LPG++HNV S+ AHD AV GAM+QI +W ++ E I + +++ML+GSGRQPG FGFDPL A+ +++L E++NGRLAMLAFSGIVTQA L G FPYF
Sbjct: 43 RSPAMPFLPRPQKLKGMV-GDKGFDPLGLSDWVPVEWLRESELKHGRVCMLAVVGFVATDLGFRLPGEMHNVASINAHDMAVDMGAMTQIGIWIAVAECIGYLAILEMLDGSGRQPGDFGFDPLQIG--GANDPEMQLKELENGRLAMLAFSGIVTQAVLTGKGFPYF 207
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A7R9YG40_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG40_9STRA) HSP 1 Score: 206 bits (524), Expect = 2.430e-62 Identity = 106/170 (62.35%), Postives = 131/170 (77.06%), Query Frame = 2
Query: 155 KSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNG-SGRQPGYFGFDPL-NFSK-DAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPY 652
KSAS+PFMP+P LDGT+ GDVGFDPLG SN V++ ++REAE+KHGRICMLAV G++A DLG+HLPG VHNVGS+ AHD AVKFG MSQILLW S+ E S + V +M+ G + RQPG F D L N++K + K L+L E+KNGRLAM+AF G+VTQA L G FP+
Sbjct: 63 KSASLPFMPRPAALDGTLVGDVGFDPLGLSNAVDVRWMREAELKHGRICMLAVVGFIATDLGIHLPGAVHNVGSVAAHDAAVKFGGMSQILLWVSVAEVWSAIAVKEMMLGETDRQPGDFKLDLLGNYAKANDQQKKDLQLKELKNGRLAMIAFGGMVTQAVLTGKPFPF 232
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: F0Y5A3_AURAN (Putative plastid light harvesting protein isoform 33 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5A3_AURAN) HSP 1 Score: 199 bits (507), Expect = 3.430e-60 Identity = 113/212 (53.30%), Postives = 139/212 (65.57%), Query Frame = 2
Query: 26 MVKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQML-NGSGRQPGYFGFDPLNFSKDAASKAKLELNEIKNGRLAMLAFSGIVTQAAL-GNDFPYF 655
M ++L + L SA+A AP A+SAVA M S ++PFM KPE LDGT GDVGFDP GF++ ++ +LREAEIKHGRICMLA G+VA DLG LPGD+H V S+ AHD A K+GAM Q+ LW S E I + GV QM+ GS R+PG +G DPL+F KA ++L EI + RLAM AFSG+VTQA L G FPYF
Sbjct: 1 MARSLVLISLAASASALVAPV-----PAAKSAVA-----MNYQASEALPFMEKPEALDGTYAGDVGFDPFGFTSIFDVKWLREAEIKHGRICMLAWTGFVATDLGFTLPGDMHQVSSVLAHDVACKYGAMQQLFLWLSFTEVILSAGVAQMMWMGSPREPGDYGLDPLDFCSTPEKKADMKLKEITHCRLAMFAFSGVVTQAVLTGKGFPYF 202
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Match: A0A6J4B112_9STRA (Fucoxanthin chlorophyll a/c protein 6 n=1 Tax=Chaetoceros gracilis TaxID=184592 RepID=A0A6J4B112_9STRA) HSP 1 Score: 196 bits (499), Expect = 6.660e-59 Identity = 121/215 (56.28%), Postives = 146/215 (67.91%), Query Frame = 2
Query: 29 VKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLH---LPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQML-NGSGRQPGYFGFDPLNF--SKDAASKAKLELNEIKNGRLAMLAFSGIVTQAALGND-FPY 652
+K +A L+ SAAAF APS+ GA A +A+ + KS ++PF+P PE L G V GD GFDP FS++ +DFLREAEIKHGRICMLA G+VAVDLG LP + ++ AHD V+ GAMSQI LW S+FEAISTV V+QML SGR+PGYFGFDPL F K A +++L EIKNGRLAMLAFSG+VTQA L FPY
Sbjct: 1 MKLALLASLIASAAAF-APSSSTGAARASTALDAGK------KSQALPFLPYPENLAGYV-GDAGFDPFRFSDFAPMDFLREAEIKHGRICMLAWLGFVAVDLGARIYPLPEAYEGLTAVTAHDALVQQGAMSQIFLWCSVFEAISTVSVIQMLYEESGREPGYFGFDPLGFLNGKSEAEVNEMKLKEIKNGRLAMLAFSGVVTQAVLTQGPFPY 207 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|75635 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18973 ID=mRNA_18973|Name=jgi.p|Trimin1|75635|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=918bp|location=Sequence derived from alignment at Contig_539:4722..7338+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGTTAACCTGAGAGACAACATGGCCATGGTGAAGGCGCTCGCTGTTGCCGback to top protein sequence of jgi.p|Trimin1|75635 >Trimin1|75635|CE75634_1843 ID=Trimin1|75635|CE75634_1843|Name=jgi.p|Trimin1|75635|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=213bp MAMVKALAVAGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIback to top mRNA from alignment at Contig_539:4722..7338+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18973 ID=mRNA_18973|Name=jgi.p|Trimin1|75635|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2617bp|location=Sequence derived from alignment at Contig_539:4722..7338+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_539:4722..7338+ >mRNA_18973 ID=mRNA_18973|Name=jgi.p|Trimin1|75635|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=639bp|location=Sequence derived from alignment at Contig_539:4722..7338+ (Tribonema minus UTEX_B_3156 )back to top |