Trimin1|66766|CE66765_34 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|66766
Unique NameTrimin1|66766|CE66765_34
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length230
Homology
BLAST of jgi.p|Trimin1|66766 vs. uniprot
Match: A0A835YU88_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU88_9STRA)

HSP 1 Score: 478 bits (1229), Expect = 9.250e-171
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0
Query:    1 MSAHQRCSRQDSRFVRAVITQVLLAVPGADQHERPADCPLELGDDMYAQQEADKTFVKYTGWRCPYCSKIFVSELYLDKHLDTKHPEEAPTHGRCLADLCPMFGCDAPTCAAATLTAHRRRCRDVMAQCFPQQASPRLYDALALRYCNAFACDGGGRLRLPAPADITLTATVRHWGHYWGSVRGVITAVAVLVLVAFYVVLWLIRRENTMQDDLWQFRRRRRRRQSKVE 229
            MSAHQRCSRQDSRFVRAVITQVLLAVPGADQHERPADCPLELGDDMYAQQEADKTFVKYTGWRCPYCSKIFVSELYLDKHLDTKHPEEAPTHGRCLADLCPMFGCDAPTCAAATLTAHRRRCRDVMAQCFPQQASPRLYDALALRYCNAFACDGGGRLRLPAPADITLTATVRHWGHYWGSVRGVITAVAVLVLVAFYVVLWLIRRENTMQDDLWQFRRRRRRRQSKVE
Sbjct:    1 MSAHQRCSRQDSRFVRAVITQVLLAVPGADQHERPADCPLELGDDMYAQQEADKTFVKYTGWRCPYCSKIFVSELYLDKHLDTKHPEEAPTHGRCLADLCPMFGCDAPTCAAATLTAHRRRCRDVMAQCFPQQASPRLYDALALRYCNAFACDGGGRLRLPAPADITLTATVRHWGHYWGSVRGVITAVAVLVLVAFYVVLWLIRRENTMQDDLWQFRRRRRRRQSKVE 229          
BLAST of jgi.p|Trimin1|66766 vs. uniprot
Match: UPI000D738892 (uncharacterized protein LOC112553463 n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D738892)

HSP 1 Score: 84.3 bits (207), Expect = 6.370e-16
Identity = 47/147 (31.97%), Postives = 66/147 (44.90%), Query Frame = 0
Query:    2 SAHQRCSRQDSRFVRAVITQVLLAVPGADQHERPADCPLELGDDMYAQQEADKTFVKYTGWRCPYCSKIFVSELYLDKHLDTKHPEEAPTHGR-CLADLCPMFGCDAPT------------CAAATLTAHRRRCRDVMAQCFPQQAS 135
            S+ QRC R  SR VR V+ + LL        E   +CP     D +  QE+ K+      W C +C K F+SE +LDKH D +HP+        CL D+C +F CD  +            C    +    R+C +V+  C P   S
Sbjct:   19 SSVQRCDRGRSRLVRKVVHEKLLPAFSNLNTEPSPECPFSTTRDKFRVQESHKSIKDGVRWVCHFCGKAFISEYFLDKHFDNRHPDRVENKDSVCLEDVCEVFRCDVISGAMTPDYWDIALCIEDDMNRIYRKCTEVVKMCVPSGLS 165          
BLAST of jgi.p|Trimin1|66766 vs. uniprot
Match: A0A2T7NIT3_POMCA (C2H2-type domain-containing protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NIT3_POMCA)

HSP 1 Score: 84.3 bits (207), Expect = 3.450e-15
Identity = 47/147 (31.97%), Postives = 66/147 (44.90%), Query Frame = 0
Query:    2 SAHQRCSRQDSRFVRAVITQVLLAVPGADQHERPADCPLELGDDMYAQQEADKTFVKYTGWRCPYCSKIFVSELYLDKHLDTKHPEEAPTHGR-CLADLCPMFGCDAPT------------CAAATLTAHRRRCRDVMAQCFPQQAS 135
            S+ QRC R  SR VR V+ + LL        E   +CP     D +  QE+ K+      W C +C K F+SE +LDKH D +HP+        CL D+C +F CD  +            C    +    R+C +V+  C P   S
Sbjct:  275 SSVQRCDRGRSRLVRKVVHEKLLPAFSNLNTEPSPECPFSTTRDKFRVQESHKSIKDGVRWVCHFCGKAFISEYFLDKHFDNRHPDRVENKDSVCLEDVCEVFRCDVISGAMTPDYWDIALCIEDDMNRIYRKCTEVVKMCVPSGLS 421          
BLAST of jgi.p|Trimin1|66766 vs. uniprot
Match: A0A7S0T4L3_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T4L3_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 2.800e-14
Identity = 46/145 (31.72%), Postives = 67/145 (46.21%), Query Frame = 0
Query:    7 CSRQDSRFVRAVITQVLL-AVPGADQHERPADCPLELGDDMYAQQEADKTFVKYTGWRCPYCSKIFVSELYLDKHLDTKHPEEAPTHGR-CLADLCPMFGCDA------------------PTCAAATLTAHRRRCRDVMAQCFP 131
            CSR+ SR  R V+ +     V   ++   P +CP +   DMY + E  K  V+ T W+  Y  K+F SE Y+DKH+D++H ++ P     CLAD C +  CD                     C+   L   R  C  +M +CFP
Sbjct:   68 CSRERSRHARGVLDEFFYPVVVDKNRFTLPLNCPFDRAQDMYLEHERHKEQVRRTQWKSLYSDKVFRSEYYVDKHMDSRHIDKIPAGADVCLADYCEVLQCDEHQAYKHPEVRRKIGAARQARCSEEKLKGVRHFCEVLMNRCFP 212          
BLAST of jgi.p|Trimin1|66766 vs. uniprot
Match: A0A3S1BQ57_ELYCH (C2H2-type domain-containing protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1BQ57_ELYCH)

HSP 1 Score: 75.9 bits (185), Expect = 1.110e-12
Identity = 44/154 (28.57%), Postives = 68/154 (44.16%), Query Frame = 0
Query:    2 SAHQRCSRQDSRFVRAVITQVLLAVPGADQHERPADCPLELGDDMYAQQEADKTFVKYTGWRCPYCSKIFVSELYLDKHLDTKHPEEAPTHGR-CLADLCPMFGCDAPT------------CAAATLTAHRRRCRDVMAQCFPQQASPRLYDAL 142
            S  + C R  SR V  V+ + +  V      +    CP  L  D+YA QE  K     + W C +C K F+SE +LD+H + +HP+   T    CLAD C +F CD  +            C  + +     +C+ ++  C P + +    D L
Sbjct:   37 SPEKVCQRAKSRVVAKVVREKMFPVFNELGVKLNPSCPFSLQRDVYALQEDHKVQEGSSRWTCNFCGKSFISEFFLDRHFENRHPDSIQTGDIVCLADACDVFRCDIISGVAQPDYWDIALCLESDMQELLTQCQTLVEACIPSELTKNETDTL 190          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|66766 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YU88_9STRA9.250e-171100.00C2H2-type domain-containing protein n=1 Tax=Tribon... [more]
UPI000D7388926.370e-1631.97uncharacterized protein LOC112553463 n=1 Tax=Pomac... [more]
A0A2T7NIT3_POMCA3.450e-1531.97C2H2-type domain-containing protein n=1 Tax=Pomace... [more]
A0A7S0T4L3_9CHLO2.800e-1431.72Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A3S1BQ57_ELYCH1.110e-1228.57C2H2-type domain-containing protein n=1 Tax=Elysia... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 62..85
e-value: 0.0078
score: 25.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 64..85
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 62..90
score: 10.65789
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 62..88
e-value: 2.2E-5
score: 26.6
NoneNo IPR availablePANTHERPTHR21385ZINC FINGER PROTEIN-RELATEDcoord: 4..216

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_42contigContig_42:396157..397492 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|66766mRNA_5660Tribonema minus UTEX_B_3156 mRNAContig_42 396078..397542 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|66766|CE66765_34 ID=Trimin1|66766|CE66765_34|Name=jgi.p|Trimin1|66766|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=230bp
MSAHQRCSRQDSRFVRAVITQVLLAVPGADQHERPADCPLELGDDMYAQQ
EADKTFVKYTGWRCPYCSKIFVSELYLDKHLDTKHPEEAPTHGRCLADLC
PMFGCDAPTCAAATLTAHRRRCRDVMAQCFPQQASPRLYDALALRYCNAF
ACDGGGRLRLPAPADITLTATVRHWGHYWGSVRGVITAVAVLVLVAFYVV
LWLIRRENTMQDDLWQFRRRRRRRQSKVE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type