Trimin1|47509|CE47508_322 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|47509
Unique NameTrimin1|47509|CE47508_322
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length270
Homology
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: A0A835YZR7_9STRA (Fucoxanthin chl a/c light-harvesting protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR7_9STRA)

HSP 1 Score: 508 bits (1308), Expect = 1.830e-181
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0
Query:    1 MVARTLAVAAAVAAPALAFVAPSSSSLGVAPRASSSLRMMSDEVMSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALFGLTPGEEKIEAEIATDAIQAFDYLEYFLHRLHLI 269
            MVARTLAVAAAVAAPALAFVAPSSSSLGVAPRASSSLRMMSDEVMSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALFGLTPGEEKIEAEIATDAIQAFDYLEYFLHRLHLI
Sbjct:    1 MVARTLAVAAAVAAPALAFVAPSSSSLGVAPRASSSLRMMSDEVMSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALFGLTPGEEKIEAEIATDAIQAFDYLEYFLHRLHLI 269          
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: A0A835YPP6_9STRA (Fucoxanthin chl a/c light-harvesting protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPP6_9STRA)

HSP 1 Score: 372 bits (956), Expect = 8.630e-128
Identity = 201/262 (76.72%), Postives = 218/262 (83.21%), Query Frame = 0
Query:    9 AAAVAAPALAFVAPSSSSLGVAPRASSSLRMMS--DEVMSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALFGLTPGEEKIEAEIATDAIQAFDYLEYFLHRLHL 268
            AAA  A A AFVAP ++       +SS+LRM S  +EVMS+SVPFLPRNPVLD  +LAGDVGFDPLNLAKDE TLLFYRDAEVKHARLAMLAALGWVV ELFDGRLA AA APDLLVRPD EGIGLAPSLLNGGL+ IP AYWL+VVGLTGALE QFAAIT  +V QGREPGDYGFDPF LWP++ E QK  R +ELKNGRL MIAIVAFAFQEAVSRVPVVEETPALFGLTP E+  EAEI   A  +F+ +EYFLHRLHL
Sbjct:   11 AAATIATASAFVAPHTALPVAKATSSSALRMSSIGNEVMSESVPFLPRNPVLDEFELAGDVGFDPLNLAKDEKTLLFYRDAEVKHARLAMLAALGWVVSELFDGRLAAAANAPDLLVRPDGEGIGLAPSLLNGGLATIPAAYWLLVVGLTGALETQFAAITPGVVAQGREPGDYGFDPFNLWPQEKEAQKDLRTKELKNGRLAMIAIVAFAFQEAVSRVPVVEETPALFGLTPNEKIAEAEIGEVAAASFNVIEYFLHRLHL 272          
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: A0A1Z5JFF2_FISSO (Light-harvesting complex II chlorophyll a/b binding protein 5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFF2_FISSO)

HSP 1 Score: 180 bits (456), Expect = 3.370e-52
Identity = 99/191 (51.83%), Postives = 125/191 (65.45%), Query Frame = 0
Query:   45 MSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALF 235
            MS+S+PF+ R   LD   LAGDVGFDP   AKD  +L+ YR+AE+KHARLAMLAA GW + ELF+ + A   GAP ++   D      APS+LNGGL  I   YW++ +    A+E    +  K   K    PG+ GFDP GL+P+DPE Q+  +L E+KNGRL MIAI AFAFQE VS++ VVEETP  F
Sbjct:   64 MSESLPFMTRPVALDGT-LAGDVGFDPFGFAKDNASLMKYREAEIKHARLAMLAAAGWPMSELFNTKFASTFGAPSIVDATDR-----APSVLNGGLGKISPVYWVVCLVAAAAIEAYGFSQAK---KADYFPGNLGFDPLGLYPKDPEGQRRLQLNEIKNGRLAMIAITAFAFQEFVSKLGVVEETPFFF 245          
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: A0A7S2PPT6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PPT6_9STRA)

HSP 1 Score: 175 bits (444), Expect = 9.680e-51
Identity = 105/220 (47.73%), Postives = 138/220 (62.73%), Query Frame = 0
Query:   21 APSSSSLGVAPRASSSLRMMSDEVMSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEV---QFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQ--KLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALF 235
            A SSS+L +A    +++  ++   MSQ+VPFL R  VLD VDLAGDVGFDPLNLA   D L+  R+AE+KHARLAMLAA GW + EL D ++A A      L   D       PSLLNGGL  I   +W   VGLT A+++   + A    D +     PGD GFDPFGL+PE+ +E+  K  +L E+K+GR+ M+A+  +A QEAV +  VV+ETP  F
Sbjct:    8 ASSSSTLLLASLIITNVNALAGPQMSQAVPFLARPKVLDQVDLAGDVGFDPLNLAGTVDNLMEMREAEIKHARLAMLAAAGWPISELLDNKIASALNLSSTLDAADR-----VPSLLNGGLDKISPLWWGFCVGLTAAIDLYGQKRARFVADYI-----PGDLGFDPFGLYPEEMDEEGRKRMQLAEVKHGRIAMLAVTGYAIQEAVLKEGVVDETPFFF 217          
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: A0A7S4JV13_9STRA (Hypothetical protein n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JV13_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.380e-49
Identity = 101/194 (52.06%), Postives = 126/194 (64.95%), Query Frame = 0
Query:   45 MSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGRE---PGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALF 235
            MSQS+PF+ R   L    +AGDVGFDPL  AK E  L+ YR+AEVKHARLAMLAA GW + E+FD ++A A     L + P  +    APSLLNGGL  +   YW+  +GL  A  V F  I K   K+      PG+ GFDPFG++P+D + Q+  +L E+KNGRL MIAI AFA QEAVS+V VV+ETP  F
Sbjct:   67 MSQSMPFMERPAALTGA-IAGDVGFDPLGFAKSESDLMNYREAEVKHARLAMLAAAGWPLSEVFDRKIATA-----LNLAPAVDANDRAPSLLNGGLGKVSPLYWVACLGLAAA--VDFYGIQKS--KENNPDYFPGNLGFDPFGVYPKDKDGQERMQLAEIKNGRLAMIAIFAFAVQEAVSKVGVVDETPLFF 250          
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: A0A7S1ZQD0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZQD0_TRICV)

HSP 1 Score: 170 bits (430), Expect = 2.820e-48
Identity = 99/194 (51.03%), Postives = 124/194 (63.92%), Query Frame = 0
Query:   45 MSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGRE---PGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALF 235
            MS+S+PF+ R  VL    L GDVGFDP   AK E  L+ YR+AEVKHARLAMLAA GW + E+FD ++A A G   +L   D       PSLLNGGL  I   YW+  + L GA++  F  I +   K G     PG+ GFDPFG++P+D E Q+  +L E+KNGRL MIA+  FA QEAVS+V VV+ETP  F
Sbjct:   63 MSESMPFMARPAVLTG-SLPGDVGFDPFGFAKSESDLMNYREAEVKHARLAMLAAAGWPLSEVFDKKIAGALGMVPMLDANDR-----VPSLLNGGLGKISPLYWVGCIALAGAID--FYGIQRS--KGGNADYFPGNLGFDPFGVYPKDSEGQRWMQLAEIKNGRLAMIAVFGFAIQEAVSKVGVVDETPFFF 246          
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: A0A1Z5K7G5_FISSO (Light-harvesting complex I chlorophyll a/b binding protein 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7G5_FISSO)

HSP 1 Score: 168 bits (425), Expect = 6.690e-48
Identity = 88/192 (45.83%), Postives = 127/192 (66.15%), Query Frame = 0
Query:   45 MSQSVPFLPRNPVLDSVDLAGDVGFDPLNLA-KDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALF 235
            MS+++PF+ R  +LD   LAGDVGFDP   A  D  TL++ R+AE+KH RLAMLA +GW + ELFD  +A+  G P  L +      G +PS+LNGGL  I +AYW+ V  L G +E++ A + K+   +   PGD GFDP  L+P+   ++K+ + +E+K+GR+ M+AI+ F  QEA+ R+PVV+ETP  F
Sbjct:   47 MSKALPFVKRPKLLDGT-LAGDVGFDPFGFAGNDIPTLVYMREAEIKHCRLAMLAVVGWPIAELFDKPIAETLGLPTALTKS-----GASPSVLNGGLDRIDIAYWVAVAALAGIVELENAKV-KEAKGKKYTPGDCGFDPLNLYPKSDADKKVMQTKEIKHGRVAMMAILGFVAQEALYRIPVVQETPMFF 231          
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: A0A7S3YYW7_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YYW7_9EUKA)

HSP 1 Score: 168 bits (426), Expect = 1.520e-47
Identity = 94/191 (49.21%), Postives = 123/191 (64.40%), Query Frame = 0
Query:   45 MSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALF 235
            MSQ++PFLPR   LD VD+AGD GFDPL LA D++TL+ YR AE+KH RLAMLAA  W ++EL +  LA+  G P L+    +E  G +PS+LNGGL  +   YW  VV LT  +E     +  D      EPGDY FDP GL P+D   ++  +L+E+K+GRL MIAI+ F  QE V +  VV++TP  F
Sbjct:   89 MSQAIPFLPRPENLDLVDMAGDYGFDPLKLAGDKETLVQYRLAEIKHGRLAMLAAAAWPLQELTNPVLAEKLGLPSLV----SETGGRSPSVLNGGLEQVSYTYWTAVVLLTIVIET----LGNDSWGGKIEPGDYRFDPLGLMPKDEAGKRDMKLKEIKHGRLAMIAILGFVVQEFVKKTAVVDQTPMFF 271          
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: B7G4U8_PHATC (Protein fucoxanthin chlorophyll a/c protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G4U8_PHATC)

HSP 1 Score: 167 bits (423), Expect = 2.740e-47
Identity = 100/192 (52.08%), Postives = 119/192 (61.98%), Query Frame = 0
Query:   45 MSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGRE-PGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALF 235
            MSQS+PF+ R   LD   L GDVGFDPL  AK +  L+ YR+AEVKHARLAMLAA GW + ELFD ++A   G   LL   D      APSLLNGGL  +   YW  V  L  A  +    I+K    +    PG+ G DPFGL+P+D   Q+  +L+ELKNGRL MIAI AFAFQE VS+  VV ETP  F
Sbjct:   59 MSQSLPFMERPAALDGT-LVGDVGFDPLGFAKTKADLINYREAEVKHARLAMLAAAGWPLSELFDAKIANWMGMTPLLDANDR-----APSLLNGGLGKVSPVYW--VACLVAAAAIDVYGISKARKNEPDYFPGNLGIDPFGLFPKDAAAQEDMKLKELKNGRLAMIAISAFAFQEFVSKFGVVSETPIFF 242          
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: A0A7S4ABF7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ABF7_9STRA)

HSP 1 Score: 166 bits (420), Expect = 2.980e-47
Identity = 94/195 (48.21%), Postives = 122/195 (62.56%), Query Frame = 0
Query:   42 DEVMSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFY-RDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALF 235
            D  MSQ++PF  R  +LD   +AGDVGFDP  LA D+   L Y R+AE+KH+RLAMLAA GW + EL+D ++A A G P LL        G APSLLNGGL  I  AYW+ +V L G +E++   + ++  K     GD  FDP  L P+D E Q     +E+K+GR+ M+AI+ FA QEA+ R PVV ETP  F
Sbjct:   36 DGDMSQALPFAQRPKILDGT-MAGDVGFDPFGLAGDDKAKLMYMREAEIKHSRLAMLAAAGWPISELWDKQIADAVGLPSLLTNA-----GDAPSLLNGGLDKISAAYWVAIVSLAGIIELENMKMKEEKGK-AYIAGDCNFDPLNLLPQDKEGQMQMMTKEIKHGRIAMMAILGFAIQEALYRTPVVAETPFFF 223          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZR7_9STRA1.830e-181100.00Fucoxanthin chl a/c light-harvesting protein n=1 T... [more]
A0A835YPP6_9STRA8.630e-12876.72Fucoxanthin chl a/c light-harvesting protein n=2 T... [more]
A0A1Z5JFF2_FISSO3.370e-5251.83Light-harvesting complex II chlorophyll a/b bindin... [more]
A0A7S2PPT6_9STRA9.680e-5147.73Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4JV13_9STRA1.380e-4952.06Hypothetical protein n=4 Tax=Odontella aurita TaxI... [more]
A0A7S1ZQD0_TRICV2.820e-4851.03Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1Z5K7G5_FISSO6.690e-4845.83Light-harvesting complex I chlorophyll a/b binding... [more]
A0A7S3YYW7_9EUKA1.520e-4749.21Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
B7G4U8_PHATC2.740e-4752.08Protein fucoxanthin chlorophyll a/c protein n=2 Ta... [more]
A0A7S4ABF7_9STRA2.980e-4748.21Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 44..254
e-value: 1.1E-41
score: 145.0
NoneNo IPR availablePANTHERPTHR21649:SF125CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTICcoord: 9..230
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 40..229
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 62..221
e-value: 3.1E-36
score: 125.3
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 9..230

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_24contigContig_24:400550..405540 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|47509mRNA_7502Tribonema minus UTEX_B_3156 mRNAContig_24 400518..405671 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|47509|CE47508_322 ID=Trimin1|47509|CE47508_322|Name=jgi.p|Trimin1|47509|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=270bp
MVARTLAVAAAVAAPALAFVAPSSSSLGVAPRASSSLRMMSDEVMSQSVP
FLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAAL
GWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWL
IVVGLTGALEVQFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQKLARL
RELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALFGLTPGEEKIEAEIAT
DAIQAFDYLEYFLHRLHLI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln