Trimin1|354724|estExt_Genemark1.C_Ctg_4950002 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354724
Unique NameTrimin1|354724|estExt_Genemark1.C_Ctg_4950002
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length158
Homology
BLAST of jgi.p|Trimin1|354724 vs. uniprot
Match: A0A835YZY5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZY5_9STRA)

HSP 1 Score: 297 bits (761), Expect = 4.160e-101
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query:    1 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLANMFSFGKK 157
            MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLANMFSFGKK
Sbjct:   46 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLANMFSFGKK 202          
BLAST of jgi.p|Trimin1|354724 vs. uniprot
Match: A0A835YSA5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA5_9STRA)

HSP 1 Score: 281 bits (718), Expect = 7.460e-95
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0
Query:    1 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLA 149
            MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLA
Sbjct:    1 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLA 149          
BLAST of jgi.p|Trimin1|354724 vs. uniprot
Match: D8LSK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSK3_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 3.670e-33
Identity = 73/145 (50.34%), Postives = 97/145 (66.90%), Query Frame = 0
Query:   17 RPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAA---EAGVFSPEQYEKFLDARATVPSGASN-YWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLANMFSFGKK 157
            RP AG T KG KKT +  D +   PA +RR + +A A ++ + KA+     GVF+P Q+E F  AR  VPSG  + YW++IA +VPGQNA  CK++A  +LFE A GTK N+FGGY+ETIE  DYVD +AD+M K+  +F  GKK
Sbjct:   69 RPMAGGTVKGGKKTKITQDVT---PA-QRRAQEKATAIRERSRKASTRKSEGVFTPPQFEAFKKARKEVPSGKGDAYWEKIAARVPGQNAAACKRVAESMLFEAAVGTKSNYFGGYIETIETPDYVDPEADIMFKINKLFGRGKK 209          
BLAST of jgi.p|Trimin1|354724 vs. uniprot
Match: W7TIQ4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIQ4_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.030e-21
Identity = 49/88 (55.68%), Postives = 58/88 (65.91%), Query Frame = 0
Query:   65 GVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLANMF 152
            G F+ EQ +    AR  VPS A++YWQ+IA KVPGQ AE CK M +QLL +KA GT KNFFGGYVE  E K  VD +A V  +L   F
Sbjct:  127 GYFTNEQLQALEVARREVPSSAASYWQKIASKVPGQTAETCKAMTNQLLLDKARGTGKNFFGGYVEVKETKMVVDTEATVGKRLKAAF 214          
BLAST of jgi.p|Trimin1|354724 vs. uniprot
Match: A0A7S2X777_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X777_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 2.780e-11
Identity = 42/94 (44.68%), Postives = 59/94 (62.77%), Query Frame = 0
Query:   66 VFSPEQYEKFLDARATVPSGASN-YWQRIADKV-PGQNAENCKKMASQLLFEKAAGTKKNFFGGYV----ETIEVKDYVDEDA-DVMGKLANMF 152
            VF+ +Q  +FL AR  +PSG+ + YWQ++AD+V  G  A  CK++A   LF+KAAGT  NFF  +V    E +E   YVDE A D M ++ N +
Sbjct:   91 VFTDKQVARFLQARKELPSGSGDAYWQKVADRVGDGITAYECKRLAQNQLFKKAAGTSSNFFKNFVDVKGEYVE-SGYVDETAADPMTQMKNFW 183          
BLAST of jgi.p|Trimin1|354724 vs. uniprot
Match: A0A7S0CYG4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CYG4_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 6.020e-11
Identity = 46/100 (46.00%), Postives = 56/100 (56.00%), Query Frame = 0
Query:   67 FSPEQYEKFLDARATVPSGASN-YWQRIADKV-PGQNAENCKKMASQLLFEKAAGTKKNFFGGYV----ETIEVKDYVDEDA-DVMGKLANMFS--FGKK 157
            FS  Q  +FL AR  V SGA + YW  IA +V  G     CK++A   LF+KAAGT +NFF  YV    E +E   YVD DA D M ++ N F   FG K
Sbjct:  102 FSDAQVSRFLQARKEVKSGAGDAYWDEIARRVGDGVTGYECKRLAQNQLFKKAAGTSQNFFKSYVDVKGEYVE-SGYVDADAPDAMSQMGNFFGGLFGAK 200          
BLAST of jgi.p|Trimin1|354724 vs. uniprot
Match: A0A0G4FCV5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FCV5_VITBC)

HSP 1 Score: 57.0 bits (136), Expect = 6.040e-7
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 0
Query:   78 ARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFF 125
            AR  VPSGA  YW +IA++VPG+ A  C+      LF +AAGT KNFF
Sbjct:  110 ARREVPSGAFLYWDQIAERVPGKTATQCEDYVRTQLFNRAAGTNKNFF 157          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354724 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835YZY5_9STRA4.160e-101100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YSA5_9STRA7.460e-95100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LSK3_ECTSI3.670e-3350.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TIQ4_9STRA1.030e-2155.68Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2X777_9EUKA2.780e-1144.68Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S0CYG4_9EUKA6.020e-1146.00Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A0G4FCV5_VITBC6.040e-754.17Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 58..120
e-value: 2.1E-8
score: 35.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 65..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_495contigContig_495:3853..6297 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354724mRNA_18917Tribonema minus UTEX_B_3156 mRNAContig_495 3853..6778 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354724|estExt_Genemark1.C_Ctg_4950002 ID=Trimin1|354724|estExt_Genemark1.C_Ctg_4950002|Name=jgi.p|Trimin1|354724|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=158bp
MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQ
AIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQ
NAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLAN
MFSFGKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf