mRNA_18917 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354724
Unique NamemRNA_18917
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354724 vs. uniprot
Match: A0A835YZY5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZY5_9STRA)

HSP 1 Score: 297 bits (760), Expect = 2.710e-98
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1 
Query:    1 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLANMFSFGKK 471
            MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLANMFSFGKK
Sbjct:   46 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLANMFSFGKK 202
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BLAST of jgi.p|Trimin1|354724 vs. uniprot
Match: A0A835YSA5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSA5_9STRA)

HSP 1 Score: 280 bits (717), Expect = 4.570e-92
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1 
Query:    1 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLA 447
            MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLA
Sbjct:    1 MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLA 149
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BLAST of jgi.p|Trimin1|354724 vs. uniprot
Match: D8LSK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSK3_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 5.650e-31
Identity = 73/145 (50.34%), Postives = 97/145 (66.90%), Query Frame = 1 
Query:   49 RPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQAIAAKKAAEKAA---EAGVFSPEQYEKFLDARATVPSGASN-YWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLANMFSFGKK 471
            RP AG T KG KKT +  D +   PA +RR + +A A ++ + KA+     GVF+P Q+E F  AR  VPSG  + YW++IA +VPGQNA  CK++A  +LFE A GTK N+FGGY+ETIE  DYVD +AD+M K+  +F  GKK
Sbjct:   69 RPMAGGTVKGGKKTKITQDVT---PA-QRRAQEKATAIRERSRKASTRKSEGVFTPPQFEAFKKARKEVPSGKGDAYWEKIAARVPGQNAAACKRVAESMLFEAAVGTKSNYFGGYIETIETPDYVDPEADIMFKINKLFGRGKK 209
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BLAST of jgi.p|Trimin1|354724 vs. uniprot
Match: W7TIQ4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIQ4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 7.440e-20
Identity = 49/88 (55.68%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:  193 GVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLANMF 456
            G F+ EQ +    AR  VPS A++YWQ+IA KVPGQ AE CK M +QLL +KA GT KNFFGGYVE  E K  VD +A V  +L   F
Sbjct:  127 GYFTNEQLQALEVARREVPSSAASYWQKIASKVPGQTAETCKAMTNQLLLDKARGTGKNFFGGYVEVKETKMVVDTEATVGKRLKAAF 214
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BLAST of jgi.p|Trimin1|354724 vs. uniprot
Match: A0A7S2X777_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X777_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 6.690e-10
Identity = 42/94 (44.68%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:  196 VFSPEQYEKFLDARATVPSGASN-YWQRIADKV-PGQNAENCKKMASQLLFEKAAGTKKNFFGGYV----ETIEVKDYVDEDA-DVMGKLANMF 456
            VF+ +Q  +FL AR  +PSG+ + YWQ++AD+V  G  A  CK++A   LF+KAAGT  NFF  +V    E +E   YVDE A D M ++ N +
Sbjct:   91 VFTDKQVARFLQARKELPSGSGDAYWQKVADRVGDGITAYECKRLAQNQLFKKAAGTSSNFFKNFVDVKGEYVE-SGYVDETAADPMTQMKNFW 183
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BLAST of jgi.p|Trimin1|354724 vs. uniprot
Match: A0A7S0CYG4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CYG4_9EUKA)

HSP 1 Score: 68.2 bits (165), Expect = 1.400e-9
Identity = 46/100 (46.00%), Postives = 56/100 (56.00%), Query Frame = 1 
Query:  199 FSPEQYEKFLDARATVPSGASN-YWQRIADKV-PGQNAENCKKMASQLLFEKAAGTKKNFFGGYV----ETIEVKDYVDEDA-DVMGKLANMFS--FGKK 471
            FS  Q  +FL AR  V SGA + YW  IA +V  G     CK++A   LF+KAAGT +NFF  YV    E +E   YVD DA D M ++ N F   FG K
Sbjct:  102 FSDAQVSRFLQARKEVKSGAGDAYWDEIARRVGDGVTGYECKRLAQNQLFKKAAGTSQNFFKSYVDVKGEYVE-SGYVDADAPDAMSQMGNFFGGLFGAK 200
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BLAST of jgi.p|Trimin1|354724 vs. uniprot
Match: A0A0G4FCV5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FCV5_VITBC)

HSP 1 Score: 57.0 bits (136), Expect = 5.390e-6
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:  232 ARATVPSGASNYWQRIADKVPGQNAENCKKMASQLLFEKAAGTKKNFF 375
            AR  VPSGA  YW +IA++VPG+ A  C+      LF +AAGT KNFF
Sbjct:  110 ARREVPSGAFLYWDQIAERVPGKTATQCEDYVRTQLFNRAAGTNKNFF 157
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354724 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835YZY5_9STRA2.710e-98100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YSA5_9STRA4.570e-92100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LSK3_ECTSI5.650e-3150.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TIQ4_9STRA7.440e-2055.68Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2X777_9EUKA6.690e-1044.68Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S0CYG4_9EUKA1.400e-946.00Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A0G4FCV5_VITBC5.390e-654.17Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_495contigContig_495:3853..6778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354724|estExt_Genemark1.C_Ctg_4950002
Max annot lvl2759|Eukaryota
EggNOG OGs2D5NM@1|root,2SZ3Q@2759|Eukaryota
Evalue6.03e-34
Seed ortholog2880.D8LSK3
Hectar predicted targeting categoryother localisation
TranscriptId355046
TrackFilteredModels1
ProteinId354724
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354724gene_18917Tribonema minus UTEX_B_3156 geneContig_495 3853..6778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354724Trimin1|354724|estExt_Genemark1.C_Ctg_4950002Tribonema minus UTEX_B_3156 polypeptideContig_495 3853..6297 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18917_1exon_18917_1Tribonema minus UTEX_B_3156 exonContig_495 3853..3928 +
exon_18917_2exon_18917_2Tribonema minus UTEX_B_3156 exonContig_495 4631..4823 +
exon_18917_3exon_18917_3Tribonema minus UTEX_B_3156 exonContig_495 5394..5550 +
exon_18917_4exon_18917_4Tribonema minus UTEX_B_3156 exonContig_495 6250..6778 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18917CDS_18917Tribonema minus UTEX_B_3156 CDSContig_495 3853..3928 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_18917UTR3_18917Tribonema minus UTEX_B_3156 three_prime_UTRContig_495 6298..6778 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18917 ID=mRNA_18917|Name=jgi.p|Trimin1|354724|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=955bp|location=Sequence derived from alignment at Contig_495:3853..6778+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTTCAAGCTTGGACCCCCCAAGGCGACGTCTGCCGCCAGCTCTCG
CCCCACGGCTGGCGCAACGACCAAAGGCCTCAAGAAGACACCTGTCGCGT
CTGATTCATCATGGAACGGCCCTGCTGTGGAGCGGAGGAGAAAAGCGCAG
GCGATTGCGGCCAAGAAGGCGGCAGAGAAGGCTGCTGAGGCGGGGGTGTT
TTCCCCGGAACAGTACGAGAAGTTTCTTGATGCAAGGGCTACGGTGCCAT
CAGGAGCTTCCAACTACTGGCAGCGCATTGCGGACAAGGTGCCAGGACAG
AATGCCGAGAACTGCAAGAAGATGGCGAGCCAGCTGCTGTTTGAGAAGGC
AGCGGGCACAAAGAAAAACTTCTTCGGGGGGTATGTAGAGACCATCGAGG
TCAAAGATTACGTGGACGAGGATGCGGACGTGATGGGCAAGCTTGCCAAC
ATGTTCAGCTTTGGCAAGAAGTGATGTGCAACAAGCACATGCTCAATGTA
TCGTGACAACGCAATCCTTGGTTTCAAGGATGCATGTCAAGAGTTTGTGA
ACTTGAAGTACGCTCTGCTGGTACTGTGTTCCAGCAGAAATGTTCAAGTG
GGCTGTTGCTAAACGCTTTTGCGACAGCCAGTGGTGTCACAACAGAGCCA
GCTAGTGGCATTCTGGTGGTCAGCTGTGGCAGGCTGTGCCGATCCACTGC
ACATGGCGATGCGGCCATGATTGTATAGTCTCAAGGCGTTTTTGCAGCAG
TACTTCTGGCTTTACTACCATGGGATTATGGAACAGGGGCTACATGGTTT
AGCAGGAGCACAACGGTGGCATTTGCTTTTTGTTGGTATCAGCATCAGAG
CAGCTTCGATGCATGAGCTGTGGGCATAAGCGCAACGTGGTTGTGATGGA
CATTGCACCCAGATGTACAGAGTGTGCATCAATAATACTTGTTGTCAGGC
GGCGC
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protein sequence of jgi.p|Trimin1|354724

>Trimin1|354724|estExt_Genemark1.C_Ctg_4950002 ID=Trimin1|354724|estExt_Genemark1.C_Ctg_4950002|Name=jgi.p|Trimin1|354724|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=158bp
MVFKLGPPKATSAASSRPTAGATTKGLKKTPVASDSSWNGPAVERRRKAQ
AIAAKKAAEKAAEAGVFSPEQYEKFLDARATVPSGASNYWQRIADKVPGQ
NAENCKKMASQLLFEKAAGTKKNFFGGYVETIEVKDYVDEDADVMGKLAN
MFSFGKK*
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mRNA from alignment at Contig_495:3853..6778+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18917 ID=mRNA_18917|Name=jgi.p|Trimin1|354724|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2926bp|location=Sequence derived from alignment at Contig_495:3853..6778+ (Tribonema minus UTEX_B_3156 )
ATGGTGTTCAAGCTTGGACCCCCCAAGGCGACGTCTGCCGCCAGCTCTCG
CCCCACGGCTGGCGCAACGACCAAAGGTGAGAGGCGTGTTCGACAATCGT
GTTCGGAATCAGTGAGACAGCTGTGAATGCATAACCACGGACTGCTTCGC
AAAGCACACGTTCGCCAGTCCCTGTGCAGTGACTGGCAATGTCGTAGACG
CCCTGCGTGCAAAAAAATTGACAGTGCTGTCATTGGGACCACAGCGTGCC
TGCGTTGCCTACAGCACTAAAAGAGCATTGCATTGCCATTGCTGTCATTT
AAAACAGTGCATCATGCCATGCAACTGGCAGCTTCCAGCTGTTGTAGGTC
ACTACCATTTCCATTTTCAGCAAAATGTCTTCTGTATCATCCTCGTACGT
CATGCTTGACCTCAGCAGGTTATGCGTTGCCGCCGCGCACTGCCGTTTTG
GGCGCTCTATTGACGCTGTCCAAGCCACTCGTGTCGCACCATCATCGTAC
AATCCTGCTGAGGACCTCCAAGCATGGCTTGACAGCTGATAAGAGCTGGC
GACTAGTCTACACATGACACGTTGGAAACTTTCAGTCGCCAATGGACGGT
CCTTCTTGTTTTTTGTAAAGACTTGGTCAACAAATATGAGGAAGTGGGCC
ATGAGGCAAAGGATGCAGAGACAGGCTCGCCTTGTACATCAGTAGCATCA
TTGCAGTGGCATTAACATGTGCGGCAATTACCATGCCTGATGCTAATCAA
CATGACTGCTGCGTGCACCATCCTCCAGGCCTCAAGAAGACACCTGTCGC
GTCTGATTCATCATGGAACGGCCCTGCTGTGGAGCGGAGGAGAAAAGCGC
AGGCGATTGCGGCCAAGAAGGCGGCAGAGAAGGCTGCTGAGGCGGGGGTG
TTTTCCCCGGAACAGTACGAGAAGTTTCTTGATGCAAGGGCTACGGTGCC
ATCAGGAGCTTCCAACTACTGGTGAGAGGGCTCTTTCGCATTTGGATGGA
GAGGCATGGCTAGCACACATGGAGGCTGCATGTTGCCGTAGGGAGCGGCA
CTTACATGTTGTTGTTTTCAGAGCAGCCCAGACTTGCAACTGCATCGCAA
ACTGTGCTCCAGCTATACCTGCTTGGTTGATTACAATGTCCTGTTATTCA
CCAGATTACTACCTCATTGAGGTGGCAACAGTAATGCAGGGCGCAGTCAT
CAGTCTAACAGCAGGTCATGCAGGGTATAGCATGCAGAGCGGGCAGCTGG
AAAATTGCCTAGTAGTGCAGGAAGATGTGAGTGGGCTGTTGTTACCACAT
GTAGCGTCACAGGAGTAGAATCCATATCTGCTGATAGCGTCAGTTACTGG
CACAGCTTGTGCCGAGGGCCAGTACGTGGAAAAGACAAGCATGCACATGC
CATGTCAGCCGCGCATTCTATTTCTTGTTGGAGTTTCAGACAGGTCATGT
AAGCATTGTCTACACCGCTGCTCAAATGTCACATTGCCCTCAGCATTGTG
TTAGTCTCACTTCGTCTTCAACTGCTGTTTGGCCTCTGTAGGCAGCGCAT
TGCGGACAAGGTGCCAGGACAGAATGCCGAGAACTGCAAGAAGATGGCGA
GCCAGCTGCTGTTTGAGAAGGCAGCGGGCACAAAGAAAAACTTCTTCGGG
GGGTATGTAGAGACCATCGAGGTCAAAGATTACGTGGACGAGGATGCGGT
GAGTGCTTTGGTCTGCAATCCTCTTTGCATTTCATTCATTGTTGCAAGGT
CTGATTTTTATTGTCAAGTTACATAGAGTGGCAGCAGAGGCACCTGCAGC
GGTTGAAGCAGTAGGAAGTCGTCATGCACTGTTGTTGGCGCTTCACTTCT
GCACCGCAAAGTGAAGTATTTGCAAGTGCAGCAGTGTAGCGACATAGTCG
GCCAGGGTACCTCACCTGCCACTTTTCCAGATTTAGATTTGTCAGTTGCG
GATGCGGTTGCCCCAGGGGCCCGGAGAACCTGCTTGAAGGCATGCGTCAG
AAGTTTTTAGCTTGTGCATTTGAACCTAGAGTAGCTGAAAGATCAGCTCC
AATCTACAGTCGCAAGATACCAGCAACGCAGCTGTCAGCGTTCGTGAAAC
AGCTTTCATCTCTAATGAGGTGTACTGTCATGGCAGAACTGAAGACTCTC
CCAGGTCAAGCAGTTAGTGTACATGATACTGTGTCGCATGTGCTCCGATG
TTGTCAGGCACTCGTGCAGTTTCACCATATCCACACAGATTATGCGATAG
TTTCTTACATGACCACATGCATACATATTAAAGTCACATTATGTACCTAC
ATCATCACATGTACATTGAAATCCATCACATTATACATTTCGGGTTGCTT
TCCTCTCATCCATTTCTACGTATGCGTCGTTTGTTTGCATTGCGCAGGAC
GTGATGGGCAAGCTTGCCAACATGTTCAGCTTTGGCAAGAAGTGATGTGC
AACAAGCACATGCTCAATGTATCGTGACAACGCAATCCTTGGTTTCAAGG
ATGCATGTCAAGAGTTTGTGAACTTGAAGTACGCTCTGCTGGTACTGTGT
TCCAGCAGAAATGTTCAAGTGGGCTGTTGCTAAACGCTTTTGCGACAGCC
AGTGGTGTCACAACAGAGCCAGCTAGTGGCATTCTGGTGGTCAGCTGTGG
CAGGCTGTGCCGATCCACTGCACATGGCGATGCGGCCATGATTGTATAGT
CTCAAGGCGTTTTTGCAGCAGTACTTCTGGCTTTACTACCATGGGATTAT
GGAACAGGGGCTACATGGTTTAGCAGGAGCACAACGGTGGCATTTGCTTT
TTGTTGGTATCAGCATCAGAGCAGCTTCGATGCATGAGCTGTGGGCATAA
GCGCAACGTGGTTGTGATGGACATTGCACCCAGATGTACAGAGTGTGCAT
CAATAATACTTGTTGTCAGGCGGCGC
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Coding sequence (CDS) from alignment at Contig_495:3853..6778+

>mRNA_18917 ID=mRNA_18917|Name=jgi.p|Trimin1|354724|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=474bp|location=Sequence derived from alignment at Contig_495:3853..6778+ (Tribonema minus UTEX_B_3156 )
ATGGTGTTCAAGCTTGGACCCCCCAAGGCGACGTCTGCCGCCAGCTCTCG
CCCCACGGCTGGCGCAACGACCAAAGGCCTCAAGAAGACACCTGTCGCGT
CTGATTCATCATGGAACGGCCCTGCTGTGGAGCGGAGGAGAAAAGCGCAG
GCGATTGCGGCCAAGAAGGCGGCAGAGAAGGCTGCTGAGGCGGGGGTGTT
TTCCCCGGAACAGTACGAGAAGTTTCTTGATGCAAGGGCTACGGTGCCAT
CAGGAGCTTCCAACTACTGGCAGCGCATTGCGGACAAGGTGCCAGGACAG
AATGCCGAGAACTGCAAGAAGATGGCGAGCCAGCTGCTGTTTGAGAAGGC
AGCGGGCACAAAGAAAAACTTCTTCGGGGGGTATGTAGAGACCATCGAGG
TCAAAGATTACGTGGACGAGGATGCGGACGTGATGGGCAAGCTTGCCAAC
ATGTTCAGCTTTGGCAAGAAGTGA
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