Trimin1|354328|estExt_Genemark1.C_Ctg_2310008 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354328
Unique NameTrimin1|354328|estExt_Genemark1.C_Ctg_2310008
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length169
Homology
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BLAST of jgi.p|Trimin1|354328 vs. uniprot
Match: A0A836CGN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGN3_9STRA)

HSP 1 Score: 248 bits (633), Expect = 6.410e-82
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 
Query:    1 MKTTSKGALRSAVPHSEFLIRQQELQRRIKLTEAQLQEAKEENKRRGRYPREKAAKVNALDAELKLLQSGVLPEEARAPPKVSEAAALELPAPPLLFKAGWLILSSRQLAGLDSQPLQLSLSTMLRHQXXXXXXXXXXXXXXXXXXXXXXXXXXVVVVVFADVASVQR 168
            MKTTSKGALRSAVPHSEFLIRQQELQRRIKLTEAQLQEAKEENKRRGRYPREKAAKVNALDAELKLLQSGVLPEEARAPPKVSEAAALELPAPPLLFKAGWLILSSRQLAGLDSQPLQLSLSTMLRHQXXXXXXXXXXXXXXXXXXXXXXXXXXVVVVVFADVASVQR
Sbjct:    1 MKTTSKGALRSAVPHSEFLIRQQELQRRIKLTEAQLQEAKEENKRRGRYPREKAAKVNALDAELKLLQSGVLPEEARAPPKVSEAAALELPAPPLLFKAGWLILSSRQLAGLDSQPLQLSLSTMLRHQXXXXXXXXXXXXXXXXXXXXXXXXXXVVVVVFADVASVQR 168
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BLAST of jgi.p|Trimin1|354328 vs. uniprot
Match: A0A835Z5P5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.190e-26
Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 0 
Query:   21 RQQELQRRIKLTEAQLQEAKEENKRRGRYPREKAAKVNALDAELKLLQSGVLPEEARAPPKVSEAAALE 89
            RQQELQRRIK T+AQLQEAKEENKRRGRYP+EKAAKVNALDAELKLL+SGVLPEEA+ PPKVSEAAALE
Sbjct:    7 RQQELQRRIKQTQAQLQEAKEENKRRGRYPKEKAAKVNALDAELKLLRSGVLPEEAQPPPKVSEAAALE 75
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BLAST of jgi.p|Trimin1|354328 vs. uniprot
Match: A0A835Z3Y8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Y8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.100e-13
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 0 
Query:   29 IKLTEAQLQEAKEENKRRGRYPREKAAKVNALDAELKLLQSGVLPEEARAPPKVSEAAALE 89
            +K TEAQL+EAK+ + R+GRYP E   +V+ALDA+LKLLQSGV P+EA+ PPK+SEAAAL+
Sbjct:    1 MKETEAQLREAKQSHTRKGRYPTELKRRVDALDAKLKLLQSGVFPDEAQRPPKMSEAAALD 61
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354328 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CGN3_9STRA6.410e-82100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z5P5_9STRA1.190e-2691.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3Y8_9STRA8.100e-1365.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 22..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_231contigContig_231:83602..87649 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354328mRNA_18119Tribonema minus UTEX_B_3156 mRNAContig_231 83602..87649 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354328|estExt_Genemark1.C_Ctg_2310008 ID=Trimin1|354328|estExt_Genemark1.C_Ctg_2310008|Name=jgi.p|Trimin1|354328|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=169bp
MKTTSKGALRSAVPHSEFLIRQQELQRRIKLTEAQLQEAKEENKRRGRYP
REKAAKVNALDAELKLLQSGVLPEEARAPPKVSEAAALELPAPPLLFKAG
WLILSSRQLAGLDSQPLQLSLSTMLRHQQQQQLLLLLLPLLLLLLPLLLL
PLLPVVVVVFADVASVQR*
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