mRNA_18119 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354328
Unique NamemRNA_18119
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354328 vs. uniprot
Match: A0A836CGN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGN3_9STRA)

HSP 1 Score: 248 bits (633), Expect = 6.410e-82
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1 
Query:    1 MKTTSKGALRSAVPHSEFLIRQQELQRRIKLTEAQLQEAKEENKRRGRYPREKAAKVNALDAELKLLQSGVLPEEARAPPKVSEAAALELPAPPLLFKAGWLILSSRQLAGLDSQPLQLSLSTMLRHQXXXXXXXXXXXXXXXXXXXXXXXXXXVVVVVFADVASVQR 504
            MKTTSKGALRSAVPHSEFLIRQQELQRRIKLTEAQLQEAKEENKRRGRYPREKAAKVNALDAELKLLQSGVLPEEARAPPKVSEAAALELPAPPLLFKAGWLILSSRQLAGLDSQPLQLSLSTMLRHQXXXXXXXXXXXXXXXXXXXXXXXXXXVVVVVFADVASVQR
Sbjct:    1 MKTTSKGALRSAVPHSEFLIRQQELQRRIKLTEAQLQEAKEENKRRGRYPREKAAKVNALDAELKLLQSGVLPEEARAPPKVSEAAALELPAPPLLFKAGWLILSSRQLAGLDSQPLQLSLSTMLRHQXXXXXXXXXXXXXXXXXXXXXXXXXXVVVVVFADVASVQR 168
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BLAST of jgi.p|Trimin1|354328 vs. uniprot
Match: A0A835Z5P5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.190e-26
Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:   61 RQQELQRRIKLTEAQLQEAKEENKRRGRYPREKAAKVNALDAELKLLQSGVLPEEARAPPKVSEAAALE 267
            RQQELQRRIK T+AQLQEAKEENKRRGRYP+EKAAKVNALDAELKLL+SGVLPEEA+ PPKVSEAAALE
Sbjct:    7 RQQELQRRIKQTQAQLQEAKEENKRRGRYPKEKAAKVNALDAELKLLRSGVLPEEAQPPPKVSEAAALE 75
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BLAST of jgi.p|Trimin1|354328 vs. uniprot
Match: A0A835Z3Y8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Y8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.100e-13
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:   85 IKLTEAQLQEAKEENKRRGRYPREKAAKVNALDAELKLLQSGVLPEEARAPPKVSEAAALE 267
            +K TEAQL+EAK+ + R+GRYP E   +V+ALDA+LKLLQSGV P+EA+ PPK+SEAAAL+
Sbjct:    1 MKETEAQLREAKQSHTRKGRYPTELKRRVDALDAKLKLLQSGVFPDEAQRPPKMSEAAALD 61
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354328 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CGN3_9STRA6.410e-82100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z5P5_9STRA1.190e-2691.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3Y8_9STRA8.100e-1365.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_231contigContig_231:83602..87649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354328|estExt_Genemark1.C_Ctg_2310008
Hectar predicted targeting categoryother localisation
TranscriptId354650
TrackFilteredModels1
ProteinId354328
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354328gene_18119Tribonema minus UTEX_B_3156 geneContig_231 83602..87649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354328Trimin1|354328|estExt_Genemark1.C_Ctg_2310008Tribonema minus UTEX_B_3156 polypeptideContig_231 83602..87649 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18119_5exon_18119_5Tribonema minus UTEX_B_3156 exonContig_231 83602..83631 -
exon_18119_4exon_18119_4Tribonema minus UTEX_B_3156 exonContig_231 85662..85742 -
exon_18119_3exon_18119_3Tribonema minus UTEX_B_3156 exonContig_231 86560..86624 -
exon_18119_2exon_18119_2Tribonema minus UTEX_B_3156 exonContig_231 86796..87067 -
exon_18119_1exon_18119_1Tribonema minus UTEX_B_3156 exonContig_231 87591..87649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18119CDS_18119Tribonema minus UTEX_B_3156 CDSContig_231 87591..87649 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18119 ID=mRNA_18119|Name=jgi.p|Trimin1|354328|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=507bp|location=Sequence derived from alignment at Contig_231:83602..87649- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACCACGTCGAAGGGCGCGCTGCGCTCGGCGGTGCCGCACAGCGA
GTTTCTCATACGGCAGCAGGAGCTGCAGCGTCGCATCAAGCTGACGGAAG
CGCAGTTACAGGAAGCCAAGGAGGAAAACAAACGGCGAGGACGGTATCCC
CGGGAAAAAGCGGCGAAAGTGAACGCGCTGGATGCGGAGCTGAAGTTGCT
GCAGAGCGGAGTGCTCCCGGAGGAGGCGCGGGCACCGCCTAAGGTGTCGG
AGGCTGCTGCTTTGGAACTGCCCGCGCCTCCGCTGTTGTTCAAGGCAGGC
TGGCTTATCCTCAGCTCCCGCCAGCTGGCAGGCCTCGACAGTCAACCGCT
GCAGCTATCTCTTTCAACAATGCTGCGGCACCAGCAACAGCAGCAGCTGC
TGCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCTGCCGCTGCTGCTGCTG
CCGCTGCTGCCGGTGGTAGTGGTGGTGTTCGCCGACGTCGCCAGCGTGCA
GCGGTAG
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protein sequence of jgi.p|Trimin1|354328

>Trimin1|354328|estExt_Genemark1.C_Ctg_2310008 ID=Trimin1|354328|estExt_Genemark1.C_Ctg_2310008|Name=jgi.p|Trimin1|354328|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=169bp
MKTTSKGALRSAVPHSEFLIRQQELQRRIKLTEAQLQEAKEENKRRGRYP
REKAAKVNALDAELKLLQSGVLPEEARAPPKVSEAAALELPAPPLLFKAG
WLILSSRQLAGLDSQPLQLSLSTMLRHQQQQQLLLLLLPLLLLLLPLLLL
PLLPVVVVVFADVASVQR*
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mRNA from alignment at Contig_231:83602..87649-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18119 ID=mRNA_18119|Name=jgi.p|Trimin1|354328|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4048bp|location=Sequence derived from alignment at Contig_231:83602..87649- (Tribonema minus UTEX_B_3156 )
ATGAAGACCACGTCGAAGGGCGCGCTGCGCTCGGCGGTGCCGCACAGCGA
GTTTCTCATGTAGCACCTAGGGGCATAGCGTTAATTGAGTGACAAGGGAC
TTTCGGAAAAGGGCATCATTGGGGAGCCAAGGGAGCGGGCAGCGGAACGT
GTGATTTCATTTTCGGCGATTTCTCGGGAGATGCCGGGAGAGGCAGTGTT
TCAGCCGCGTGGGGCAAAAAGATGATGGGACATATGATGGAACACGAAAT
TGGAGCAAAATTTGGGTTGCAGTTTGAGGCAGTTGTTGCAGTTCACACAC
GCGCCCGAGAGGCATGCTTTGCAGCGACGACGACATAGATGGAGGCATAA
CCGATGAGCAACTGCTGCAGCTTCCTGACGTATCGCATGGCGCCACTGTT
GGCGCTAGTCAGGGCGGTTGCAGCGCTGTGATCGCCACATCGGTAGGTCA
CGCTGCTGATGAGGATGATGTGGGCGCCCCGGCTGGCGCAGGTGCGGCTT
CTGGGGCAGCAGACCAACCTTGCAATGCAACAGTTTCGCGGCAGCCACCT
TCTGCACAGCAACTGATGTTGGACGCTGCCAGACGGCAGCAGGAGCTGCA
GCGTCGCATCAAGCTGACGGAAGCGCAGTTACAGGAAGCCAAGGAGGAAA
ACAAACGGCGAGGACGGTATCCCCGGGAAAAAGCGGCGAAAGTGAACGCG
CTGGATGCGGAGCTGAAGTTGCTGCAGAGCGGAGTGCTCCCGGAGGAGGC
GCGGGCACCGCCTAAGGTGTCGGAGGCTGCTGCTTTGGAACTGCCCGCGC
CTCCGCTGTTGTTCAAGGCAGGCTGGCTTATCCTCAGCTCCCGCCAGCTG
GCAGGTAGGTGAAAGTTGGCTGCTTTTGTGCTGTCTTCAAGTATCTGTAC
ATAGGCAGTGTACACGCGTGCTACTGCTGGCGGCGGTGTTCATCAATTGC
TATGCTTGTTCCGTTCTGGCTTTAAGCAATGTTTCCACTTGTCAGCTGAA
TGCCACACATCTGTTGTTGTTGCAGGCCTCGACAGTCAACCGCTGCAGCT
ATCTCTTTCAACAATGCTGCGGCACCAGCAACAGCAGCAGGTGCTGTTGA
TCCAGCAGTTGTGCCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCGC
GAGTGTGCCAGCCCTATCACAGTGGCTGGCGATGCCGCTGCAGTAGACGC
ACCAGCAGGCGCTAGTACAGTGCCAGGCGACATGTCGTCTGCTGTGCAGT
GGGTTACTCAGCAGCTGGGCTTACCACATCTCGGCGCGCCACGTTCTGGT
CGTGAGGTGCAACGAGTTCTCAGCGGCGGCCATGGTCCAGAAGTGTTCTT
CCATCAACCTGCAGTGCTGGCTTCTCATGCCATGTCAGCTGGCATTTTGA
TGCCAGAAACATCTGCTGCCAACTTCTCGCGGAGCGTGGTGCGCGATGCA
GCAGCATGGCAAGTGCTGCAGACGCAATACCAACATCTGCAACGCAGATT
ACGCGACGAGCCCCTTGCACTGCTGCCACCCATGGCGGGCTACATCAACA
CAATGTCACTGCCCCGCACGGAGCGTCTGTCACAAGAGGGCAACATGCAG
CGGCTGCCTGGGACATTCATTACATGCCGCAGCACGGCACCAGTGCAGCT
GCAACCACTTCTCCAGCCATCGCTGCCTGCTGCCAGTGCTGCTTGCGTTG
AAAGTCAGCGCGATGCGCGGCGCAAGCAAGTATGGCGGGAGGCGCAGCAG
CGGCGTACTGTGCGCAAGCGGGAGCTACCAGTTTCGGCAGAACAGTTGTC
GGCGCGCCGCGAAAAAGAGCGCGTACGGAAGGCAGCACAGCGAGCAGCCA
AGCGGCTCAAGCCAGCAGATGGAGCTGCTCCTGCAGCTGCTGCCGCAGTG
ACTGCAGCTGCTGCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCTGCCGC
TGCTGCTGCTGCCGCTGCTGCCGGTGGTAGTGGTGGTGGTGCTCGTGTCA
CTATGCAAATTTTGTCAAGATTATGATGAATTTGAGGTTCTCAACATTGT
GACCATTTGTCTTAGTGTATGTGTGCTGGTGCTGGCAGCATCATCAATTG
CATGATGAAATGACGAATTTGTGCACTAAGTAGTGCACTGCATGACACTG
CATGACATCAACAAATTCAGAAGCTGTATATACTGCAGTGCACAAATTTT
CAAAGTCACAATGTGCCATATAAAGCAGACTGACTGCAGACATCATCCAC
AGGCAACATCATGTGATGAGTGAATTCTGCTGCTTTGCCAAGCATGTTTG
CTGCAGCCAATGATGAGTTTTTCCCCGACAATGTCATTTCGTCATAAATG
ACGTTTGGTGCTTGATTGGGGCTCTATACTGTGCTTGTCTGGGATGCTTC
TGCATGAAATGTCGGCTGTGAAGTGGCGGCGGCGTTGGAGCGAAATTTCC
TCGTTTTCTCCTTTTTCTTCCCCCTTTTTTTCTCTTTTTTTCCCCTCAAA
CCCACACAGCTAAAAATTTGCCGATTTCTCGCATCTAGAACTTCAAACGC
GCGTTCGCGCCAAATTGGTACATAGGAGACGCGAAAGAAAGAAGGAGCTG
CGATACCGTTGCATTGTGCGAAGGAAAGGAGTCTGGGACAGCCGTGACTC
AGGTTAGAAGATCCCAGGAGCATATTTGTTAGATCGCGTGAACTGGGATC
TGCGTATGATAATCTGCTGCTGTTTTGACTTCCGGCTACCCTCACAGCTA
CACCACAGTAGCCTCTGCTGCTTTCGAATCATCAAGGCAGAATATGAGTA
GCTTGCGCATCGGACACGAGATGTTGATGTTGCTTTAATCTTTGGCTGAA
GCACTGCAGTCGCCAAGCGTGCCGTGTACCCAGCCCTGACACTTTGCCAT
CGGAAATCAGCTGGTGCCTGCTTACAGTGACACTGTTGTGGCATCCTCCA
CCACAGGTGTCCGCCTGGAAGTTTTCTCAAGACTATCTTCGCAACACTAG
CGGTGCCTATGGTGTCAAGCAAGAGCCTCTAGCGGGGGCTAGGTGACACT
GGTGCCATCGTGAGGCAGCCATAGGTGAGGCACCTGCTGTTCTGCAACGT
GTAAATTAGTGTCAGCGGCACATGTTTGGTAGCTGCAGTGTCTGGCACTT
CAGGTTGCCTTTGAGGATTTAATGAGGACACAAGCTTGGAGTGTCAGGAA
CTAATTGGGAGCTGTCTCTGCAGCCTGACCCTCGAGATCAGCGCCTTTCG
AGTCATGTGGCGGCTGTCGACAGGACTTGGAGAGGTATGCAGGCGCATCT
GCAGCTTGAACTTCGCAGTTGGCGCAGCGAGGTCAATTAGAGTGCGCCCA
GGGCCTACGCATCTTAAGGCAGGCGGTCTTTTCTTGGCCCTGGTGGCCAA
ATATATCTCCCCAAAATTCAGGTTGGAGCAGTGCTGTACATACCATGCTG
GACCTGACGCTCGATTTGTTCAATATACTTCGAAGTATGCACTTTGTACT
GGCTGCTGTACACTGACAAGTCGCTAGTGTAAGGCACACAGTGTCGTGAA
GGCTGGCCATGAGCTGTGGTGCTAGTCATGAAAAACCTCGAGTGTTGCGA
GTCATGTAAAACCTTAATGCAGAGAAAATCGCTGGTGACTGCAGTATTTG
TAAATCCACGTGTGCTGCCTGCATGATTCAACATGTCAAAATCTGCAGGA
GTTGAAGCAGTGTGACATGCAGAACGCAAAATTTATCTTCTGCACAGTGC
TCACAAAGAGGGGCAAGTACGACGAAGGGATGCACTTGCCCGTTTTGTGC
TCACCACCTGTTTGCGCTCGCCACCTGTGCAGGCTGCAATATTCAATCAA
ACCGGAGCTCCAGCATACTGCGACATTTTAGCACACTGCGGCACTAGCTG
ATCGTGCAGCACCCACCGCTGGCCGCCAGCCTGCCAGTGGGGTTTTATGG
CCCAGCACCAGCAGCATGACGATGCACCGCAGTCGTGCGCTGTCCACATC
GTGGCAGTGATGCAGCAGTTCGCCGACGTCGCCAGCGTGCAGCGGTAG
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Coding sequence (CDS) from alignment at Contig_231:83602..87649-

>mRNA_18119 ID=mRNA_18119|Name=jgi.p|Trimin1|354328|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=507bp|location=Sequence derived from alignment at Contig_231:83602..87649- (Tribonema minus UTEX_B_3156 )
ATGAAGACCACGTCGAAGGGCGCGCTGCGCTCGGCGGTGCCGCACAGCGA
GTTTCTCATACGGCAGCAGGAGCTGCAGCGTCGCATCAAGCTGACGGAAG
CGCAGTTACAGGAAGCCAAGGAGGAAAACAAACGGCGAGGACGGTATCCC
CGGGAAAAAGCGGCGAAAGTGAACGCGCTGGATGCGGAGCTGAAGTTGCT
GCAGAGCGGAGTGCTCCCGGAGGAGGCGCGGGCACCGCCTAAGGTGTCGG
AGGCTGCTGCTTTGGAACTGCCCGCGCCTCCGCTGTTGTTCAAGGCAGGC
TGGCTTATCCTCAGCTCCCGCCAGCTGGCAGGCCTCGACAGTCAACCGCT
GCAGCTATCTCTTTCAACAATGCTGCGGCACCAGCAACAGCAGCAGCTGC
TGCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCTGCCGCTGCTGCTGCTG
CCGCTGCTGCCGGTGGTAGTGGTGGTGTTCGCCGACGTCGCCAGCGTGCA
GCGGTAG
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