Trimin1|354309|estExt_Genemark1.C_Ctg_2300003 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354309
Unique NameTrimin1|354309|estExt_Genemark1.C_Ctg_2300003
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length233
Homology
BLAST of jgi.p|Trimin1|354309 vs. uniprot
Match: A0A835Z7M0_9STRA (PRA1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7M0_9STRA)

HSP 1 Score: 392 bits (1008), Expect = 5.690e-137
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0
Query:    1 MAELRRRFQAEAAGARQSPGTADPGSGIMGELQSIASELQSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLLVAAASLALLVFLFPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEARANAGAGLGSLLSGXXXXXXXXXXXXXXAGLRRGSGQGARR 232
            MAELRRRFQAEAAGARQSPGTADPGSGIMGELQSIASELQSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLLVAAASLALLVFLFPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEARANAGAGLGSLLSGXXXXXXXXXXXXXXAGLRRGSGQGARR
Sbjct:    1 MAELRRRFQAEAAGARQSPGTADPGSGIMGELQSIASELQSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLLVAAASLALLVFLFPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEARANAGAGLGSLLSGXXXXXXXXXXXXXXAGLRRGSGQGARR 232          
BLAST of jgi.p|Trimin1|354309 vs. uniprot
Match: D8LEX3_ECTSI (PRA1 family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEX3_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 7.030e-31
Identity = 81/188 (43.09%), Postives = 106/188 (56.38%), Query Frame = 0
Query:   18 SPGTADPGSGIMGELQSIA----SEL--------QSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLLVAAASLALLVFLFPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEARA 193
            S G+A P   +  + Q++A    SEL        + L  + M+ WGEFF +FK PRAW  +VLDER+TTN LHYRGNY  V  G ++V I+S+P +LL       LL FLFPT    RAV V  R +   ER   A++    +L  TGA   LL+  G     CL H VFRPR++ SK +R   EA+A
Sbjct:   15 SRGSAPPRPNVANQNQAVALAVLSELGAMMELFFKGLRLKEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLLVVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAAVIGASCILGLTGAWYILLFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEAQA 202          
BLAST of jgi.p|Trimin1|354309 vs. uniprot
Match: A0A7S2SJN4_9STRA (PRA1 family protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJN4_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 7.510e-21
Identity = 60/165 (36.36%), Postives = 87/165 (52.73%), Query Frame = 0
Query:   32 LQSIASELQSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLLVAAASLALLVFLFPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEARANAG 196
            LQ +  +LQ+L    +RPWGEFF  FKPP+ WT++ +++R+ TN LHYR NY  V+   +L    SSP LL+     + L V+L   +     +++ GR     ++        + +L   G    LL    LA      H VFR RNLKSKFNR+ +E +   G
Sbjct:   40 LQVLRQQLQALGLNEVRPWGEFFSHFKPPKQWTQDEVEKRVVTNFLHYRTNYLLVLGTILLAMFFSSPMLLITICLVVLLWVYLMLVKKGP--LLIEGRRFDEGQKAIGCGCASILILLMAGQLIKLLGTLSLAVILICLHMVFRQRNLKSKFNRISDEIKLRGG 202          
BLAST of jgi.p|Trimin1|354309 vs. uniprot
Match: A0A482SWI0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SWI0_9ARCH)

HSP 1 Score: 81.6 bits (200), Expect = 3.520e-15
Identity = 47/165 (28.48%), Postives = 89/165 (53.94%), Query Frame = 0
Query:   28 IMGELQSIASELQSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLLVAAASLALLVFLFPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEAR 192
            ++  L+ +  ++Q L W+ M+PW EFF  FKPP+  ++  L++RITTN LHYR NY  +  G +++ I+++P ++L + A   +  ++   +   +  ++   +     ++++   L   +L  TG    L +        C  H + RPR++ SK NR+ EE +
Sbjct:   14 LLDALKLVGEKIQVLGWKEMKPWSEFFATFKPPQFDSRH-LEQRITTNFLHYRSNYLAISLGILILQILTNPVIILSSVAIFGICTYVL--QVHRKPFIIGDFSFDGVGKQYLCAGLSAIILFATGTVVKLCWCLFYIILVCGIHMLLRPRSVSSKANRMYEEMK 175          
BLAST of jgi.p|Trimin1|354309 vs. uniprot
Match: A0A7S2U321_9EUKA (PRA1 family protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U321_9EUKA)

HSP 1 Score: 76.6 bits (187), Expect = 1.070e-13
Identity = 57/169 (33.73%), Postives = 87/169 (51.48%), Query Frame = 0
Query:   24 PGSGIMGELQSIASELQSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLL-VAAASLALLVFL-FPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEE 190
            P S +   ++ ++  L  L W + RPW EF   FK P       L+ERI TN L++RGNYC++V  + ++ +  +P  +L V    + +LVFL    ETS       G  ++   +    + + L LL + GA   + Y   L   T LAH VFR R +KS+ N++ EE
Sbjct:   22 PSSALQQFIEELSEVLSRLGWSDARPWEEFGRDFKKPTH-----LEERIWTNFLYFRGNYCYIVAATTILALFFNPTCMLAVMFCVVGMLVFLGVKVETS------PGHPMTFEMKFLAGLPVCLLLLMSAGALFWMSYGILLGMCTSLAHMVFRTRTIKSRINKVYEE 179          
BLAST of jgi.p|Trimin1|354309 vs. uniprot
Match: A0A6V3PRX0_9EUKA (PRA1 family protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3PRX0_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 2.450e-12
Identity = 55/170 (32.35%), Postives = 86/170 (50.59%), Query Frame = 0
Query:   23 DPGSGIMGELQSIASELQSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLLVAAASL-ALLVFL-FPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEE 190
            D  S +   +  ++   + L W   R W EF  +F  P       L+ER+ TN L+YRGNYC++V  + L+ +  +P+ +L A   +  +++FL    ETS       G ++S   +      + L +LA+ GA   + Y   L   T  AH VFR R LKS++N+L EE
Sbjct:   28 DEQSALQQFITEVSDVFERLGWSEARSWSEFGREFNKPSE-----LEERLWTNFLYYRGNYCYIVVATTLLALFLNPSSMLAAMFCVFGMIIFLGVKVETS------PGESMSYEMKLLAGTPVCLLVLASAGALFWMSYGLLLGMLTSFAHMVFRTRTLKSRWNKLVEE 186          
BLAST of jgi.p|Trimin1|354309 vs. uniprot
Match: A0A7S4A4L6_9STRA (PRA1 family protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4L6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.340e-6
Identity = 57/172 (33.14%), Postives = 77/172 (44.77%), Query Frame = 0
Query:   29 MGELQSIASELQSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYC----FVVFGSILVFIVSSPALLLVAAASLALLVFLFPTETSGRAVVVSGR---AVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEARA 193
            + ELQ        L +   RPWGEFFEQFKP    T   LD R+ TN LHY+ NY      VV   +L +  S  AL + A AS A +     T   GR +++ G     ++   R   A V     L   G    +      A    +AH   RPR+L +++N   +E RA
Sbjct:   11 LAELQDTWRRFD-LHYAGARPWGEFFEQFKP----TARDLDTRMATNWLHYKANYAQLTTLVVALGLLWWPTSLFALCVAAIASTASV-----TACPGRRILMIGSYSVKLTTKNRALAAAVAAPLTLIFFGVLTWIALVFSFALVLPVAHMALRPRSLSARYNAASDEVRA 172          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354309 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835Z7M0_9STRA5.690e-137100.00PRA1 family protein n=1 Tax=Tribonema minus TaxID=... [more]
D8LEX3_ECTSI7.030e-3143.09PRA1 family protein n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7S2SJN4_9STRA7.510e-2136.36PRA1 family protein n=1 Tax=Rhizochromulina marina... [more]
A0A482SWI0_9ARCH3.520e-1528.48Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2U321_9EUKA1.070e-1333.73PRA1 family protein n=1 Tax=Lotharella oceanica Ta... [more]
A0A6V3PRX0_9EUKA2.450e-1232.35PRA1 family protein n=1 Tax=Lotharella globosa Tax... [more]
A0A7S4A4L6_9STRA1.340e-633.14PRA1 family protein n=1 Tax=Pelagomonas calceolata... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004895Prenylated rab acceptor PRA1PFAMPF03208PRA1coord: 44..184
e-value: 1.2E-27
score: 96.3
IPR004895Prenylated rab acceptor PRA1PANTHERPTHR19317PRENYLATED RAB ACCEPTOR 1-RELATEDcoord: 17..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 206..232
NoneNo IPR availablePANTHERPTHR19317:SF0PRENYLATED RAB ACCEPTOR PROTEIN 1coord: 17..191

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_230contigContig_230:13871..16047 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354309mRNA_17709Tribonema minus UTEX_B_3156 mRNAContig_230 13863..16116 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354309|estExt_Genemark1.C_Ctg_2300003 ID=Trimin1|354309|estExt_Genemark1.C_Ctg_2300003|Name=jgi.p|Trimin1|354309|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=233bp
MAELRRRFQAEAAGARQSPGTADPGSGIMGELQSIASELQSLSWRNMRPW
GEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPA
LLLVAAASLALLVFLFPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLA
TTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEARANAGAGLG
SLLSGGGSAQGGDGGGGGAAGLRRGSGQGARR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004895Prenylated_rab_accept_PRA1