mRNA_17709 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|354309 vs. uniprot
Match: A0A835Z7M0_9STRA (PRA1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7M0_9STRA) HSP 1 Score: 395 bits (1015), Expect = 1.320e-137 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1 Query: 70 MAELRRRFQAEAAGARQSPGTADPGSGIMGELQSIASELQSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLLVAAASLALLVFLFPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEARANAGAGLGSLLSGXXXXXXXXXXXXXXAGLRRGSGQGARR 765 MAELRRRFQAEAAGARQSPGTADPGSGIMGELQSIASELQSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLLVAAASLALLVFLFPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEARANAGAGLGSLLSGXXXXXXXXXXXXXXAGLRRGSGQGARR Sbjct: 1 MAELRRRFQAEAAGARQSPGTADPGSGIMGELQSIASELQSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLLVAAASLALLVFLFPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEARANAGAGLGSLLSGXXXXXXXXXXXXXXAGLRRGSGQGARR 232
BLAST of jgi.p|Trimin1|354309 vs. uniprot
Match: D8LEX3_ECTSI (PRA1 family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEX3_ECTSI) HSP 1 Score: 124 bits (312), Expect = 2.600e-31 Identity = 85/205 (41.46%), Postives = 114/205 (55.61%), Query Frame = 1 Query: 70 MAELRRRFQAEAAGARQSPGTADPGSGIMGELQSIA----SEL--------QSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLLVAAASLALLVFLFPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEARA 648 M E + R + +G+R G+A P + + Q++A SEL + L + M+ WGEFF +FK PRAW +VLDER+TTN LHYRGNY V G ++V I+S+P +LL LL FLFPT RAV V R + ER A++ +L TGA LL+ G CL H VFRPR++ SK +R EA+A Sbjct: 1 MPEPQLRRRPVGSGSR---GSAPPRPNVANQNQAVALAVLSELGAMMELFFKGLRLKEMKGWGEFFARFKAPRAWNTKVLDERLTTNFLHYRGNYSVVAAGLLVVGIISNPYVLLALLCCALLLTFLFPTGEPRRAVRVGDRTLERQERLAAAVIGASCILGLTGAWYILLFYGGAGVLLCLLHGVFRPRSIGSKTSRAAAEAQA 202
BLAST of jgi.p|Trimin1|354309 vs. uniprot
Match: A0A7S2SJN4_9STRA (PRA1 family protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJN4_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.380e-20 Identity = 60/165 (36.36%), Postives = 87/165 (52.73%), Query Frame = 1 Query: 163 LQSIASELQSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLLVAAASLALLVFLFPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEARANAG 657 LQ + +LQ+L +RPWGEFF FKPP+ WT++ +++R+ TN LHYR NY V+ +L SSP LL+ + L V+L + +++ GR ++ + +L G LL LA H VFR RNLKSKFNR+ +E + G Sbjct: 40 LQVLRQQLQALGLNEVRPWGEFFSHFKPPKQWTQDEVEKRVVTNFLHYRTNYLLVLGTILLAMFFSSPMLLITICLVVLLWVYLMLVKKGP--LLIEGRRFDEGQKAIGCGCASILILLMAGQLIKLLGTLSLAVILICLHMVFRQRNLKSKFNRISDEIKLRGG 202
BLAST of jgi.p|Trimin1|354309 vs. uniprot
Match: A0A482SWI0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SWI0_9ARCH) HSP 1 Score: 81.6 bits (200), Expect = 5.850e-15 Identity = 47/165 (28.48%), Postives = 89/165 (53.94%), Query Frame = 1 Query: 151 IMGELQSIASELQSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLLVAAASLALLVFLFPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEAR 645 ++ L+ + ++Q L W+ M+PW EFF FKPP+ ++ L++RITTN LHYR NY + G +++ I+++P ++L + A + ++ + + ++ + ++++ L +L TG L + C H + RPR++ SK NR+ EE + Sbjct: 14 LLDALKLVGEKIQVLGWKEMKPWSEFFATFKPPQFDSRH-LEQRITTNFLHYRSNYLAISLGILILQILTNPVIILSSVAIFGICTYVL--QVHRKPFIIGDFSFDGVGKQYLCAGLSAIILFATGTVVKLCWCLFYIILVCGIHMLLRPRSVSSKANRMYEEMK 175
BLAST of jgi.p|Trimin1|354309 vs. uniprot
Match: A0A7S2U321_9EUKA (PRA1 family protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U321_9EUKA) HSP 1 Score: 76.6 bits (187), Expect = 1.710e-13 Identity = 57/169 (33.73%), Postives = 87/169 (51.48%), Query Frame = 1 Query: 139 PGSGIMGELQSIASELQSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLL-VAAASLALLVFL-FPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEE 639 P S + ++ ++ L L W + RPW EF FK P L+ERI TN L++RGNYC++V + ++ + +P +L V + +LVFL ETS G ++ + + + L LL + GA + Y L T LAH VFR R +KS+ N++ EE Sbjct: 22 PSSALQQFIEELSEVLSRLGWSDARPWEEFGRDFKKPTH-----LEERIWTNFLYFRGNYCYIVAATTILALFFNPTCMLAVMFCVVGMLVFLGVKVETS------PGHPMTFEMKFLAGLPVCLLLLMSAGALFWMSYGILLGMCTSLAHMVFRTRTIKSRINKVYEE 179
BLAST of jgi.p|Trimin1|354309 vs. uniprot
Match: A0A6V3PRX0_9EUKA (PRA1 family protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3PRX0_9EUKA) HSP 1 Score: 73.2 bits (178), Expect = 3.820e-12 Identity = 55/170 (32.35%), Postives = 86/170 (50.59%), Query Frame = 1 Query: 136 DPGSGIMGELQSIASELQSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYCFVVFGSILVFIVSSPALLLVAAASL-ALLVFL-FPTETSGRAVVVSGRAVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEE 639 D S + + ++ + L W R W EF +F P L+ER+ TN L+YRGNYC++V + L+ + +P+ +L A + +++FL ETS G ++S + + L +LA+ GA + Y L T AH VFR R LKS++N+L EE Sbjct: 28 DEQSALQQFITEVSDVFERLGWSEARSWSEFGREFNKPSE-----LEERLWTNFLYYRGNYCYIVVATTLLALFLNPSSMLAAMFCVFGMIIFLGVKVETS------PGESMSYEMKLLAGTPVCLLVLASAGALFWMSYGLLLGMLTSFAHMVFRTRTLKSRWNKLVEE 186
BLAST of jgi.p|Trimin1|354309 vs. uniprot
Match: A0A7S4A4L6_9STRA (PRA1 family protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4L6_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.830e-6 Identity = 57/172 (33.14%), Postives = 77/172 (44.77%), Query Frame = 1 Query: 154 MGELQSIASELQSLSWRNMRPWGEFFEQFKPPRAWTKEVLDERITTNMLHYRGNYC----FVVFGSILVFIVSSPALLLVAAASLALLVFLFPTETSGRAVVVSGR---AVSAPERRFIAIVLILTLLATTGAAATLLYASGLAAATCLAHAVFRPRNLKSKFNRLQEEARA 648 + ELQ L + RPWGEFFEQFKP T LD R+ TN LHY+ NY VV +L + S AL + A AS A + T GR +++ G ++ R A V L G + A +AH RPR+L +++N +E RA Sbjct: 11 LAELQDTWRRFD-LHYAGARPWGEFFEQFKP----TARDLDTRMATNWLHYKANYAQLTTLVVALGLLWWPTSLFALCVAAIASTASV-----TACPGRRILMIGSYSVKLTTKNRALAAAVAAPLTLIFFGVLTWIALVFSFALVLPVAHMALRPRSLSARYNAASDEVRA 172 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354309 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17709 ID=mRNA_17709|Name=jgi.p|Trimin1|354309|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=776bp|location=Sequence derived from alignment at Contig_230:13863..16116- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGAATTCATAAACAAGTGAATACCACCCTAGCCACCTCCCAGGCAGATTback to top protein sequence of jgi.p|Trimin1|354309 >Trimin1|354309|estExt_Genemark1.C_Ctg_2300003 ID=Trimin1|354309|estExt_Genemark1.C_Ctg_2300003|Name=jgi.p|Trimin1|354309|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=233bp MAELRRRFQAEAAGARQSPGTADPGSGIMGELQSIASELQSLSWRNMRPWback to top mRNA from alignment at Contig_230:13863..16116- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17709 ID=mRNA_17709|Name=jgi.p|Trimin1|354309|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2254bp|location=Sequence derived from alignment at Contig_230:13863..16116- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_230:13863..16116- >mRNA_17709 ID=mRNA_17709|Name=jgi.p|Trimin1|354309|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=699bp|location=Sequence derived from alignment at Contig_230:13863..16116- (Tribonema minus UTEX_B_3156 )back to top |